FvH4_3g05170

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016778
Physical Location & Seq
Forward (+)
2989893 .. 2992199
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05170.t1

Sequence Viewer

Length: 2010 bp
ATGCTTCTCAAACCCCCGTATTTTCCCGCCACCAAAACCAGACGAGTCTTCAGCACACTCTCATCTCTCTTAAACCTCTGCACACACCCCAAAACCCTCCGCCAACTCCACGCAAGGTACATCATCCACGGCCACCACCAAGACCCTTCTCTCTCCTCCCTTCTCATCCACCGCTACGCCGCCCTCGGCCTCCCCTCCCTCTCCAGCCGCGTCTTCAACTCCATCGCCAAACCAACTCCCATCCATTACAATGCAGTCTTAAGAAGCCTAGCTGAATTCGAGAGCACCGTTTCGGTTTACGATGATATGGTGATGAAGGGTATGTACCCAGATGAGGGTACATACCCTTATGTGCTGGGGTCGTGTTCTCGGTTCTCGGATGCGAGAATCGGGGCGAGGGTTCATGGACATGTCGTGAAACTGGGTTTGGACTTGTGTGAAATGGTACGACATGCTTTGGTTGATATGTATAGAAGTTACGGTGAATTTGGGAATGAGGGTAAGGTGTTTGATGAAATACCTATGTGGAGATTTGATTCGGTTAGTTTGGTTAATTGGTTGAGGTCGAGTGTGGATTTGAACTCGTTGCGAGTGGGAAAGGCTGTGCATTGTGTGGCTGTTGTGACCAATTTGTGTGGGGATTTGTCTGTGAATACTGCATTGTTGTCTATGTATGCCAAGTTAGGTGAGCTGGAATGTGCGGAGTTGGTGTTTGATGGAATGCCTGGGAAGGATTGTGTTGTTTGGAATATAATGATATCGGCTTATTCGCGAAATGGGAGACCGAAAGAATCCCTGGAGCTGTTGAGGTTCATGGGAAGATTAGGGGTTAGAGCTGATATGTTCACTGCAATTCCTGCGATTTCTTCAATTGCGAGGTTAAGAGCTATGGAGTTGGGGAGACAAACGCATGCTCATGTGATAAGAAATGGTTTGGATTATCAAGTGTCGGTTCATAACTCTCTTATTGACATGTACTGTGAATGCAATCGTCTAAGTTCTGCAAGAAGAATTTTTGACATGGTGAGGGACAAGACTGTGGTTTCATGGAGTGCGATGATCAAAGGATATGTGACTCATGATCAGTCTCTTGATGCTCTTGCTCTCTTTTCGGAGATGAAATGTGATGGAGTTGGAGTTGATTTTATTACAGTCATCAACATCTTGCCTGCTTGTGTGAATCTTGGAGCACTGGAGAATGTAAAATACTTTCATGGCTACTCGATGAAACTTAGCCTGAACTCGCTTTCATCTGTTAATACAGCATTTCTAGTCAGCTATGCAAAATGTGGATGCATAGAGATGGCCCGGAAGCTTTTTGATGAAGAGAACATCAATGAAAAAGATGTGATCACATGGAACTCTATGGTTGGAGCTTATGCAAAACATGGAGACTGGTATAGGTCTTTCGAGTTGTACAACCAAATGAAGGAATTGAGCATCAAACCAGACCAAGTAACCTTTCTAGGACTACTGACGGCTTGTGTAAATGCTGGTCTTGTTCAAGAAGGGAAGAAGTGTTTCAAGGAGATGATTGATATATATGGTTACAAACCGAGCCAGGAACACTATGCTTGTATGGCGGATCTACTAGGGCGTGCCGGGCAAGTCAATGAAGCAAGTGAACTGATAAAGTCTATGCCTTTCAAACCCGATGCTCGGGTTTGGGGCCCTTTGTTGAGTGCTTGTAAGCTGCATTCAGACACAGGAGTTGCAGACTTTGCTGCCGAGAAGCTTATAACTATAGAACCAAACAATGCTGGAAATCTTATATTGCTTGCCAATATAAAGGCTGCAGCTGGGAAGTGGGATGAAGTTGCTAAGATCAGGAGATCGCTTAGGGATATGGGACTGAAGAAAACCCCAGGCTGTAGCTGGGTGGAGATAAACGGGCGTCGACATGAGTTCCGAGTAGCAGATCGATCTCATGCAACATCAGATGGAATATATGCCATGTTGAGAAACCTGGAGTTGGAAAGCAAGGAAGCAAATATACAGATACATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

670

Amino Acids

74.8

Weight (kDa)

8.4

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 245 - 283 3.6e-06 PPR repeat family
PPR PF01535 247 - 277 1.4e-07 PPR repeat
PPR_2 PF13041 346 - 392 9.3e-07 PPR repeat family
PPR PF01535 348 - 378 9.2e-06 PPR repeat
PPR_2 PF13041 448 - 497 2.9e-12 PPR repeat family
PPR PF01535 451 - 480 4.7e-07 PPR repeat
PPR_long PF17177 459 - 615 2.5e-07 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 566 - 628 6.8e-20 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016778)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05170
malus_domestica MD10G1259000.v1.1
prunus_persica Prupe.4G084300_v2.0.a1
pyrus_communis pycom10g21550
rosa_chinensis RchiOBHm_Chr5g0014581
rosa_laevigata RLG00000032130
rosa_multiflora Rmu_co8518221.1_g000001 Rmu_sc0000120.1_g000005
rosa_roxburghii Rroxscaffold_1G00061900
rosa_rugosa Rorug05G0019600
rosa_samantha Rh5AG114800 Rh5BG111700 Rh5CG123200
rosa_wichuraiana Rw5G009940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1739
AccI GTMKAC 1 cut(s) 1897
AccII CGCG 2 cut(s) 210, 772
AciI CCGC 7 cut(s) 27, 100, 172, 180, 208, 701, 1583
AclWI GGATC 1 cut(s) 1593
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 3 cut(s) 275, 485, 1011
AcuI CTGAAG 2 cut(s) 34, 1874
AcyI GRCGYC 1 cut(s) 1894
AfaI GTAC 6 cut(s) 119, 326, 340, 447, 977, 1418
AfiI CCNNNNNNNGG 5 cut(s) 334, 335, 1429, 1659, 1972
AflII CTTAAG 1 cut(s) 259
AflIII ACRYGT 3 cut(s) 409, 972, 2002
AgsI TTSAA 6 cut(s) 217, 580, 870, 1505, 1525, 1648
AjnI CCWGG 5 cut(s) 724, 795, 1560, 1864, 1965
AjuI GAANNNNNNNTTGG 4 cut(s) 410, 442, 1446, 1478
Alw21I GWGCWC 2 cut(s) 287, 1192
Alw26I GTCTC 4 cut(s) 775, 895, 1092, 1386
AlwI GGATC 1 cut(s) 1593
Ama87I CYCGRG 1 cut(s) 1659
AoxI GGCC 4 cut(s) 130, 187, 1305, 1669
ApaI GGGCCC 1 cut(s) 1673
ApeKI GCWGC 4 cut(s) 1693, 1724, 1793, 1796
ApoI RAATTY 3 cut(s) 275, 485, 1011
Asp700I GAANNNNTTC 1 cut(s) 1520
AspS9I GGNCC 3 cut(s) 1306, 1669, 1670
AsuC2I CCSGG 2 cut(s) 1309, 1603
AsuHPI GGTGA 4 cut(s) 322, 494, 698, 1036
AvaI CYCGRG 1 cut(s) 1659
BaeGI GKGCMC 1 cut(s) 1673
BanII GRGCYC 1 cut(s) 1673
BarI GAAGNNNNNNTAC 4 cut(s) 308, 340, 1977, 2009
BbsI GAAGAC 2 cut(s) 40, 205
Bbv12I GWGCWC 2 cut(s) 287, 1192
BbvI GCAGC 4 cut(s) 1680, 1711, 1780, 1808
BccI CCATC 6 cut(s) 230, 248, 710, 1121, 1297, 1934
BceAI ACGGC 2 cut(s) 145, 1494
BciT130I CCWGG 5 cut(s) 726, 797, 1562, 1866, 1967
BclI TGATCA 3 cut(s) 1059, 1081, 1350
BcnI CCSGG 2 cut(s) 1309, 1603
BcoDI GTCTC 4 cut(s) 775, 895, 1092, 1386
BfaI CTAG 4 cut(s) 269, 1271, 1466, 1592
BfmI CTRYAG 3 cut(s) 1743, 1794, 1870
BfrI CTTAAG 1 cut(s) 259
BisI GCNGC 6 cut(s) 180, 208, 1694, 1725, 1794, 1797
BlsI GCNGC 6 cut(s) 181, 209, 1695, 1726, 1795, 1798
Bme1390I CCNGG 7 cut(s) 726, 797, 1309, 1562, 1603, 1866, 1967
BmeT110I CYCGRG 1 cut(s) 1659
BmgT120I GGNCC 3 cut(s) 1306, 1669, 1670
BmiI GGNNCC 2 cut(s) 1670, 1671
BmrFI CCNGG 7 cut(s) 726, 797, 1309, 1562, 1603, 1866, 1967
BmrI ACTGGG 1 cut(s) 431
BmsI GCATC 5 cut(s) 370, 1084, 1283, 1449, 1645
BmuI ACTGGG 1 cut(s) 431
BpiI GAAGAC 2 cut(s) 40, 205
BpmI CTGGAG 4 cut(s) 187, 818, 1214, 1988
Bpu10I CCTNAGC 1 cut(s) 1838
BpuMI CCSGG 2 cut(s) 1309, 1603
Bsa29I ATCGAT 1 cut(s) 1921
BsaHI GRCGYC 1 cut(s) 1894
BsaI GGTCTC 1 cut(s) 775
BsaJI CCNNGG 5 cut(s) 127, 184, 725, 795, 1864
BsaXI ACNNNNNCTCC 4 cut(s) 695, 725, 1122, 1152
Bsc4I CCNNNNNNNGG 5 cut(s) 334, 335, 1429, 1659, 1972
Bse1I ACTGG 3 cut(s) 426, 1197, 1400
BseBI CCWGG 5 cut(s) 726, 797, 1562, 1866, 1967
BseCI ATCGAT 1 cut(s) 1921
BseDI CCNNGG 5 cut(s) 127, 184, 725, 795, 1864
BseGI GGATG 6 cut(s) 123, 165, 240, 385, 1298, 1816
BseLI CCNNNNNNNGG 5 cut(s) 334, 335, 1429, 1659, 1972
BseNI ACTGG 3 cut(s) 426, 1197, 1400
BseRI GAGGAG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 1673
BseXI GCAGC 4 cut(s) 1680, 1711, 1780, 1808
BseYI CCCAGC 3 cut(s) 355, 1799, 1875
BsgI GTGCAG 1 cut(s) 64
Bsh1236I CGCG 2 cut(s) 210, 772
BshFI GGCC 4 cut(s) 132, 189, 1307, 1671
BshVI ATCGAT 1 cut(s) 1921
BsiHKAI GWGCWC 2 cut(s) 287, 1192
BsiHKCI CYCGRG 1 cut(s) 1659
BsiSI CCGG 2 cut(s) 1309, 1602
BslFI GGGAC 2 cut(s) 1043, 1863
BslI CCNNNNNNNGG 5 cut(s) 334, 335, 1429, 1659, 1972
BsmAI GTCTC 4 cut(s) 775, 895, 1092, 1386
BsmFI GGGAC 2 cut(s) 1043, 1863
BsmI GAATGC 3 cut(s) 726, 989, 1696
BsnI GGCC 4 cut(s) 132, 189, 1307, 1671
Bso31I GGTCTC 1 cut(s) 775
BsoBI CYCGRG 1 cut(s) 1659
Bsp120I GGGCCC 1 cut(s) 1669
Bsp1286I GDGCHC 3 cut(s) 287, 1192, 1673
Bsp1407I TGTACA 1 cut(s) 1416
Bsp143I GATC 8 cut(s) 1059, 1081, 1350, 1585, 1824, 1832, 1918, 1922
Bsp68I TCGCGA 1 cut(s) 772
BspACI CCGC 7 cut(s) 27, 100, 172, 180, 208, 701, 1583
BspANI GGCC 4 cut(s) 132, 189, 1307, 1671
BspDI ATCGAT 1 cut(s) 1921
BspFNI CGCG 2 cut(s) 210, 772
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 2 cut(s) 1670, 1671
BspMAI CTGCAG 1 cut(s) 1798
BspPI GGATC 1 cut(s) 1593
BspTI CTTAAG 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 775
BsrGI TGTACA 1 cut(s) 1416
BsrI ACTGG 3 cut(s) 426, 1197, 1400
BssECI CCNNGG 5 cut(s) 127, 184, 725, 795, 1864
BssMI GATC 8 cut(s) 1059, 1081, 1350, 1585, 1824, 1832, 1918, 1922
BssNI GRCGYC 1 cut(s) 1894
Bst2UI CCWGG 5 cut(s) 726, 797, 1562, 1866, 1967
Bst4CI ACNGT 5 cut(s) 289, 482, 980, 1039, 1153
Bst6I CTCTTC 1 cut(s) 1320
BstACI GRCGYC 1 cut(s) 1894
BstAFI CTTAAG 1 cut(s) 259
BstAPI GCANNNNNTGC 2 cut(s) 857, 1721
BstAUI TGTACA 1 cut(s) 1416
BstC8I GCNNGC 4 cut(s) 912, 1170, 1599, 1779
BstDEI CTNAG 4 cut(s) 995, 1232, 1821, 1838
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 6 cut(s) 123, 165, 240, 385, 1298, 1816
BstFNI CGCG 2 cut(s) 210, 772
BstKTI GATC 8 cut(s) 1062, 1084, 1353, 1588, 1827, 1835, 1921, 1925
BstMAI GTCTC 4 cut(s) 775, 895, 1092, 1386
BstMBI GATC 8 cut(s) 1059, 1081, 1350, 1585, 1824, 1832, 1918, 1922
BstMWI GCNNNNNNNGC 4 cut(s) 857, 1580, 1603, 1721
BstNI CCWGG 5 cut(s) 726, 797, 1562, 1866, 1967
BstNSI RCATGY 5 cut(s) 413, 455, 914, 976, 2006
BstSCI CCNGG 7 cut(s) 724, 795, 1307, 1560, 1601, 1864, 1965
BstSFI CTRYAG 3 cut(s) 1743, 1794, 1870
BstSLI GKGCMC 1 cut(s) 1673
BstUI CGCG 2 cut(s) 210, 772
BstV1I GCAGC 4 cut(s) 1680, 1711, 1780, 1808
BstV2I GAAGAC 2 cut(s) 40, 205
BstX2I RGATCY 1 cut(s) 1585
BstYI RGATCY 1 cut(s) 1585
Bsu15I ATCGAT 1 cut(s) 1921
BsuRI GGCC 4 cut(s) 132, 189, 1307, 1671
BsuTUI ATCGAT 1 cut(s) 1921
BtgI CCRYGG 1 cut(s) 127
BtgZI GCGATG 2 cut(s) 208, 1070
BtsCI GGATG 6 cut(s) 123, 165, 240, 385, 1298, 1816
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 2 cut(s) 846, 1190
BtuMI TCGCGA 1 cut(s) 772
Cac8I GCNNGC 4 cut(s) 912, 1170, 1599, 1779
CciI TCATGA 1 cut(s) 1078
Cfr13I GGNCC 3 cut(s) 1306, 1669, 1670
ClaI ATCGAT 1 cut(s) 1921
CseI GACGC 2 cut(s) 199, 1883
Csp6I GTAC 6 cut(s) 118, 325, 339, 446, 976, 1417
CspCI CAANNNNNGTGG 2 cut(s) 616, 651
CviQI GTAC 6 cut(s) 118, 325, 339, 446, 976, 1417
DdeI CTNAG 4 cut(s) 995, 1232, 1821, 1838
DpnI GATC 8 cut(s) 1061, 1083, 1352, 1587, 1826, 1834, 1920, 1924
DpnII GATC 8 cut(s) 1059, 1081, 1350, 1585, 1824, 1832, 1918, 1922
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 1320
EarI CTCTTC 1 cut(s) 1320
EciI GGCGGA 2 cut(s) 89, 1598
Eco24I GRGCYC 1 cut(s) 1673
Eco31I GGTCTC 1 cut(s) 775
Eco32I GATATC 1 cut(s) 759
Eco57I CTGAAG 2 cut(s) 34, 1874
Eco88I CYCGRG 1 cut(s) 1659
EcoO109I RGGNCCY 2 cut(s) 1669, 1670
EcoRI GAATTC 1 cut(s) 275
EcoRII CCWGG 5 cut(s) 724, 795, 1560, 1864, 1965
EcoRV GATATC 1 cut(s) 759
EcoT22I ATGCAT 1 cut(s) 1298
EcoT38I GRGCYC 1 cut(s) 1673
FaqI GGGAC 2 cut(s) 1043, 1863
FauI CCCGC 1 cut(s) 34
FbaI TGATCA 3 cut(s) 1059, 1081, 1350
FblI GTMKAC 1 cut(s) 1897
Fnu4HI GCNGC 6 cut(s) 180, 208, 1694, 1725, 1794, 1797
FokI GGATG 6 cut(s) 110, 152, 227, 392, 1305, 1823
FriOI GRGCYC 1 cut(s) 1673
Fsp4HI GCNGC 6 cut(s) 180, 208, 1694, 1725, 1794, 1797
FspBI CTAG 4 cut(s) 269, 1271, 1466, 1592
GluI GCNGC 6 cut(s) 180, 208, 1694, 1725, 1794, 1797
GsaI CCCAGC 3 cut(s) 359, 1803, 1879
GsuI CTGGAG 4 cut(s) 187, 818, 1214, 1988
HaeIII GGCC 4 cut(s) 132, 189, 1307, 1671
HapII CCGG 2 cut(s) 1309, 1602
HgaI GACGC 2 cut(s) 199, 1883
Hin1I GRCGYC 1 cut(s) 1894
HincII GTYRAC 1 cut(s) 1898
HindII GTYRAC 1 cut(s) 1898
HindIII AAGCTT 2 cut(s) 1313, 1733
HinfI GANTC 6 cut(s) 45, 387, 536, 791, 1075, 1180
HpaII CCGG 2 cut(s) 1309, 1602
HphI GGTGA 4 cut(s) 322, 494, 698, 1036
Hpy166II GTNNAC 4 cut(s) 298, 846, 1625, 1898
Hpy188I TCNGA 5 cut(s) 379, 1114, 1702, 1910, 1939
Hpy188III TCNNGA 7 cut(s) 280, 415, 771, 1079, 1091, 1505, 1828
Hpy8I GTNNAC 4 cut(s) 298, 846, 1625, 1898
Hpy99I CGWCG 1 cut(s) 1899
HpyAV CCTTC 6 cut(s) 156, 170, 310, 724, 1423, 1502
HpyCH4III ACNGT 5 cut(s) 289, 482, 980, 1039, 1153
HpyF10VI GCNNNNNNNGC 4 cut(s) 857, 1580, 1603, 1721
HpyF3I CTNAG 4 cut(s) 995, 1232, 1821, 1838
Hsp92I GRCGYC 1 cut(s) 1894
Ksp22I TGATCA 3 cut(s) 1059, 1081, 1350
Kzo9I GATC 8 cut(s) 1059, 1081, 1350, 1585, 1824, 1832, 1918, 1922
LmnI GCTCC 3 cut(s) 799, 1187, 1373
Lsp1109I GCAGC 4 cut(s) 1680, 1711, 1780, 1808
LweI GCATC 5 cut(s) 370, 1084, 1283, 1449, 1645
MaeI CTAG 4 cut(s) 269, 1271, 1466, 1592
MaeIII GTNAC 5 cut(s) 476, 622, 1072, 1456, 1547
MalI GATC 8 cut(s) 1061, 1083, 1352, 1587, 1826, 1834, 1920, 1924
MboI GATC 8 cut(s) 1059, 1081, 1350, 1585, 1824, 1832, 1918, 1922
MboII GAAGA 8 cut(s) 40, 205, 831, 858, 1020, 1337, 1525, 1867
MfeI CAATTG 1 cut(s) 870
MflI RGATCY 1 cut(s) 1585
MhlI GDGCHC 3 cut(s) 287, 1192, 1673
MluCI AATT 8 cut(s) 275, 485, 553, 628, 852, 870, 1011, 1433
MlyI GAGTC 2 cut(s) 54, 1069
MmeI TCCRAC 3 cut(s) 1114, 1351, 1953
Mph1103I ATGCAT 1 cut(s) 1298
MroXI GAANNNNTTC 1 cut(s) 1520
MseI TTAA 5 cut(s) 71, 260, 552, 881, 1257
MslI CAYNNNNRTG 4 cut(s) 249, 408, 915, 1301
MspA1I CMGCKG 1 cut(s) 1799
MspCI CTTAAG 1 cut(s) 259
MspI CCGG 2 cut(s) 1309, 1602
MspR9I CCNGG 7 cut(s) 726, 797, 1309, 1562, 1603, 1866, 1967
MunI CAATTG 1 cut(s) 870
Mva1269I GAATGC 3 cut(s) 726, 989, 1696
MvaI CCWGG 5 cut(s) 726, 797, 1562, 1866, 1967
MvnI CGCG 2 cut(s) 210, 772
MwoI GCNNNNNNNGC 4 cut(s) 857, 1580, 1603, 1721
NciI CCSGG 2 cut(s) 1309, 1603
NdeII GATC 8 cut(s) 1059, 1081, 1350, 1585, 1824, 1832, 1918, 1922
NlaIV GGNNCC 2 cut(s) 1670, 1671
NmeAIII GCCGAG 2 cut(s) 165, 1753
NmuCI GTSAC 2 cut(s) 622, 1072
NruI TCGCGA 1 cut(s) 772
NsiI ATGCAT 1 cut(s) 1298
NspI RCATGY 5 cut(s) 413, 455, 914, 976, 2006
PaeI GCATGC 1 cut(s) 914
PagI TCATGA 1 cut(s) 1078
PciI ACATGT 3 cut(s) 409, 972, 2002
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 3 cut(s) 726, 989, 1696
PdmI GAANNNNTTC 1 cut(s) 1520
PfeI GAWTC 4 cut(s) 387, 536, 791, 1180
PkrI GCNGC 6 cut(s) 181, 209, 1695, 1726, 1795, 1798
PleI GAGTC 2 cut(s) 53, 1069
PpsI GAGTC 2 cut(s) 53, 1069
PscI ACATGT 3 cut(s) 409, 972, 2002
PsiI TTATAA 1 cut(s) 1739
Psp6I CCWGG 5 cut(s) 724, 795, 1560, 1864, 1965
PspFI CCCAGC 3 cut(s) 355, 1799, 1875
PspGI CCWGG 5 cut(s) 724, 795, 1560, 1864, 1965
PspN4I GGNNCC 2 cut(s) 1670, 1671
PspOMI GGGCCC 1 cut(s) 1669
PspPI GGNCC 3 cut(s) 1306, 1669, 1670
PstI CTGCAG 1 cut(s) 1798
PsuI RGATCY 1 cut(s) 1585
PvuII CAGCTG 1 cut(s) 1799
RruI TCGCGA 1 cut(s) 772
RsaI GTAC 6 cut(s) 119, 326, 340, 447, 977, 1418
RsaNI GTAC 6 cut(s) 118, 325, 339, 446, 976, 1417
RseI CAYNNNNRTG 4 cut(s) 249, 408, 915, 1301
SalI GTCGAC 1 cut(s) 1896
SaqAI TTAA 5 cut(s) 71, 260, 552, 881, 1257
SatI GCNGC 6 cut(s) 180, 208, 1694, 1725, 1794, 1797
Sau3AI GATC 8 cut(s) 1059, 1081, 1350, 1585, 1824, 1832, 1918, 1922
Sau96I GGNCC 3 cut(s) 1306, 1669, 1670
SchI GAGTC 2 cut(s) 54, 1069
ScrFI CCNGG 7 cut(s) 726, 797, 1309, 1562, 1603, 1866, 1967
SduI GDGCHC 3 cut(s) 287, 1192, 1673
SfaNI GCATC 5 cut(s) 370, 1084, 1283, 1449, 1645
SfcI CTRYAG 3 cut(s) 1743, 1794, 1870
SmiMI CAYNNNNRTG 4 cut(s) 249, 408, 915, 1301
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SphI GCATGC 1 cut(s) 914
Sse9I AATT 8 cut(s) 275, 485, 553, 628, 852, 870, 1011, 1433
SsiI CCGC 7 cut(s) 27, 100, 172, 180, 208, 701, 1583
SspMI CTAG 4 cut(s) 269, 1271, 1466, 1592
StyD4I CCNGG 7 cut(s) 724, 795, 1307, 1560, 1601, 1864, 1965
TaaI ACNGT 5 cut(s) 289, 482, 980, 1039, 1153
TaqI TCGA 6 cut(s) 279, 566, 1223, 1410, 1897, 1921
TaqII GACCGA 1 cut(s) 799
TasI AATT 8 cut(s) 275, 485, 553, 628, 852, 870, 1011, 1433
TatI WGTACW 2 cut(s) 975, 1416
TauI GCSGC 2 cut(s) 182, 210
TfiI GAWTC 4 cut(s) 387, 536, 791, 1180
Tru1I TTAA 5 cut(s) 71, 260, 552, 881, 1257
Tru9I TTAA 5 cut(s) 71, 260, 552, 881, 1257
TscAI CASTG 2 cut(s) 853, 1197
TseFI GTSAC 2 cut(s) 622, 1072
TseI GCWGC 4 cut(s) 1693, 1724, 1793, 1796
Tsp45I GTSAC 2 cut(s) 622, 1072
TspRI CASTG 2 cut(s) 853, 1197
Vha464I CTTAAG 1 cut(s) 259
XapI RAATTY 3 cut(s) 275, 485, 1011
XceI RCATGY 5 cut(s) 413, 455, 914, 976, 2006
XcmI CCANNNNNNNNNTGG 1 cut(s) 1872
XmiI GTMKAC 1 cut(s) 1897
XmnI GAANNNNTTC 1 cut(s) 1520
XspI CTAG 4 cut(s) 269, 1271, 1466, 1592
Zsp2I ATGCAT 1 cut(s) 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.