Rw5G009940

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016778
Physical Location & Seq
Reverse (-)
10836232 .. 10838397
2166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009940.1

Sequence Viewer

Length: 2019 bp
ATGCTTCTCAAATCCCTGCACTTTCCCGCCACCAAAACCAGACGAGCCTTGAGCACACTCCCATCTCTCTTAAACCTCTGCACAAAACCCAAAACCCTCCACCAGCTCCACGCAAGGTACATCCTTCACGGCCTCCACCAAGACCCATATCTCTCCTCCCAACTCATCCACCGCTATGCCGACCTCGGCCTCCCCTCCCTCTCCCGCCAAGTCCTCAACTCCATCGCCGACCCGACTCCGCTCCATTACACCCCAATCTTGAGAACCTTGTCAAATTCAGGTGAATTCGAGAGCACCCTTTTGGTTTACGATGAAATGGTGATGAAGGGTATGTACCCAACTGGGGATACATACCCTTCTGTGCTGAGGTCGTGTTCTCGCTTTTCGGATGCTCGAATTGGAGCCAGGGTTCATGGGCATGTGGTGAAACTGGGTTTTGATTCGTGTCATATATTGGGTTATGCTTTGGTTGATATGTATAGAAATTATGGTGATTTTGAAAATGAAGGTAAGGTGTTTGATGAAATGCCTCTGTGTAGATTTGATTCGGTTACTGTGGTTAACTGGTTGAGGTTGAGTGTGGATTTGAACTCGTTGAAGGCGGGAAAGGCTGTGCATTGTGTGGCCGTTGTGACCAATTTGTGTGGGGATTTGTCTGTGAATACTGCATTGTTGTCCATGTATGCCAAGTTGGGTGAGTTGGACAGTGCGGAGTTGATGTTTGGTGAAATGCCTGAGAGGGATTGTGTTGTTTGGAATATAATGATATCGGCGTATTCGCGAAATGGGAAACCTAAGGAATCACTGGATCTGTTGAGGTTCATGGGAAGATCAGGGGTTGGAGCCGATTTGTTTACTGCAATCCCTGCAATTTCTTCGATTGCAAGGTTAAGAGCTACTGAGTTGGGGAGACAAATGCATGCTCATGTGATAAGAAATGGTTCGGATTATCAAGTGTCGGTTCATAATTCTCTTATTGACATGTACTGTGAATGCAATCGTCTCAGTTATGCAAGAAAGATTTTTGACCTGGTGACAGACAAGACTGTGGTTTCGTGGAGTGCGATGATTAAAGGATATGTGACTCATGATCAGTCTCTTGAGGCTCTTACTCTCTTTTCAGAGATGAAATGTAATGGAGTCGGGGTTGATTTCATTACAGTCATCAATATCTTGCCTGCTTGTGTGAGTCTAGGAGCACTGGAGAACGTAAAATACTTTCATGGCTACTCGATGAAACTTGGCCTTAACTCGCTTTCATCTGTTAATACAGCATTTCTAGTCAGCTATGCAAAATGTGGATGCATAGAGATGGCCCGGAAGCTTTTTGATGAAGAGAACATCAATGAAAAAGATGTAATCACATGGAATTCTATGATTGGTGCATATGCGAAACATGGGGACTGGTATGGATCTTTCGAACTGTACAACCAAATGAAGGAATTGAGTATCAAACCAGATCAAGTAACCTTTCTAGGACTACTGACGGCCTGTGTAAATGCTGGTCTTGTTCAAGAAGGGAAGAAGTGTTTCAAGGAGATGATTGATATATATGGTTACAAACCAAGCCAGGAACACTATGCTTGTATGGCGGATCTACTGGGGCGTGCCGGGCAAGTCAATGAAGCAAGTGAACTCATAAAATCTATGCCTTTCAAACCCGATGCTCGGGTTTGGGGCCCTTTATTGAGTGCTTGTAAGCTGCATTCAGACACAGGAGTTGCAGATTTTGCTGCTGAGAAGCTTATAACTATTGAACCAAACAATGCTGGAAATCTTATATTGCTTGCCAATATAAAGGCTGCAGCTGGGAAGTGGGATGAAGTTGCTAAGATCAGGAGATCGCTTAGGGATATGGGACTGAAGAAAACCCCAGGTTGTAGCTGGGTAGAGATAAATGGACGTCGACATGAGTTCCGAGTAGCGGATCAATCTCATCCAAGATCCGATGGAATATATGCCATGTTAAGAAACCTGGAGTTAGAAAGCAAGGAAGCAAATATACATATAAATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

672

Amino Acids

74.9

Weight (kDa)

7.55

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 248 - 286 7.1e-06 PPR repeat family
PPR PF01535 250 - 280 1.2e-07 PPR repeat
PPR_2 PF13041 349 - 392 4.5e-07 PPR repeat family
PPR PF01535 351 - 381 2.4e-06 PPR repeat
PPR_2 PF13041 451 - 500 3.7e-13 PPR repeat family
PPR PF01535 454 - 483 9e-08 PPR repeat
PPR_long PF17177 462 - 618 1.9e-07 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 569 - 631 6.9e-20 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016778)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05170
malus_domestica MD10G1259000.v1.1
prunus_persica Prupe.4G084300_v2.0.a1
pyrus_communis pycom10g21550
rosa_chinensis RchiOBHm_Chr5g0014581
rosa_laevigata RLG00000032130
rosa_multiflora Rmu_co8518221.1_g000001 Rmu_sc0000120.1_g000005
rosa_roxburghii Rroxscaffold_1G00061900
rosa_rugosa Rorug05G0019600
rosa_samantha Rh5AG114800 Rh5BG111700 Rh5CG123200
rosa_wichuraiana Rw5G009940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1748
AatII GACGTC 1 cut(s) 1906
AccBSI CCGCTC 1 cut(s) 241
AccI GTMKAC 1 cut(s) 1906
AccII CGCG 1 cut(s) 781
AciI CCGC 8 cut(s) 27, 172, 205, 239, 602, 710, 1592, 1925
AclWI GGATC 5 cut(s) 816, 1420, 1602, 1935, 1938
AcoI YGGCCR 1 cut(s) 624
AcsI RAATTY 3 cut(s) 274, 284, 1369
AcuI CTGAAG 1 cut(s) 1883
AcyI GRCGYC 1 cut(s) 1903
AfaI GTAC 4 cut(s) 119, 335, 986, 1427
AfiI CCNNNNNNNGG 4 cut(s) 343, 1438, 1668, 1924
AflIII ACRYGT 1 cut(s) 981
AgsI TTSAA 7 cut(s) 500, 589, 598, 1514, 1534, 1657, 1757
AjnI CCWGG 5 cut(s) 404, 1029, 1569, 1873, 1974
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 8 cut(s) 106, 896, 1287, 1324, 1702, 1744, 1808, 1884
AluI AGCT 8 cut(s) 106, 896, 1287, 1324, 1702, 1744, 1808, 1884
Alw21I GWGCWC 3 cut(s) 56, 296, 1201
Alw26I GTCTC 3 cut(s) 904, 1007, 1101
AlwI GGATC 5 cut(s) 816, 1420, 1602, 1935, 1938
Ama87I CYCGRG 1 cut(s) 1668
AoxI GGCC 7 cut(s) 130, 187, 624, 1243, 1314, 1488, 1678
ApaI GGGCCC 1 cut(s) 1682
ApeKI GCWGC 4 cut(s) 1702, 1733, 1802, 1805
ApoI RAATTY 3 cut(s) 274, 284, 1369
ArsI GACNNNNNNTTYG 2 cut(s) 1036, 1068
Asp700I GAANNNNTTC 2 cut(s) 940, 1529
AspS9I GGNCC 3 cut(s) 1315, 1678, 1679
AsuC2I CCSGG 2 cut(s) 1318, 1612
AsuHPI GGTGA 7 cut(s) 293, 331, 436, 503, 707, 737, 1045
AsuII TTCGAA 1 cut(s) 1419
AvaI CYCGRG 1 cut(s) 1668
AxyI CCTNAGG 1 cut(s) 795
BaeGI GKGCMC 1 cut(s) 1682
BanII GRGCYC 1 cut(s) 1682
BarI GAAGNNNNNNTAC 4 cut(s) 317, 349, 1986, 2018
Bbv12I GWGCWC 3 cut(s) 56, 296, 1201
BbvCI CCTCAGC 1 cut(s) 365
BbvI GCAGC 4 cut(s) 1689, 1720, 1789, 1817
BccI CCATC 4 cut(s) 70, 230, 1306, 1943
BceAI ACGGC 3 cut(s) 145, 611, 1503
BcgI CGANNNNNNTGC 2 cut(s) 858, 892
BciT130I CCWGG 5 cut(s) 406, 1031, 1571, 1875, 1976
BciVI GTATCC 1 cut(s) 340
BclI TGATCA 1 cut(s) 1090
BcnI CCSGG 2 cut(s) 1318, 1612
BcoDI GTCTC 3 cut(s) 904, 1007, 1101
BfaI CTAG 3 cut(s) 1193, 1280, 1475
BfmI CTRYAG 1 cut(s) 1803
BfuI GTATCC 1 cut(s) 340
BisI GCNGC 4 cut(s) 1703, 1734, 1803, 1806
BlsI GCNGC 4 cut(s) 1704, 1735, 1804, 1807
Bme1390I CCNGG 7 cut(s) 406, 1031, 1318, 1571, 1612, 1875, 1976
BmeT110I CYCGRG 1 cut(s) 1668
BmgT120I GGNCC 3 cut(s) 1315, 1678, 1679
BmiI GGNNCC 4 cut(s) 403, 844, 1679, 1680
BmrFI CCNGG 7 cut(s) 406, 1031, 1318, 1571, 1612, 1875, 1976
BmrI ACTGGG 3 cut(s) 351, 440, 1610
BmsI GCATC 3 cut(s) 379, 1292, 1654
BmuI ACTGGG 3 cut(s) 351, 440, 1610
BpmI CTGGAG 2 cut(s) 1223, 1997
Bpu10I CCTNAGC 2 cut(s) 365, 1847
Bpu14I TTCGAA 1 cut(s) 1419
BpuEI CTTGAG 3 cut(s) 70, 280, 1121
BpuMI CCSGG 2 cut(s) 1318, 1612
BsaHI GRCGYC 1 cut(s) 1903
BsaJI CCNNGG 3 cut(s) 184, 405, 1873
BsaXI ACNNNNNCTCC 6 cut(s) 393, 423, 704, 734, 1131, 1161
Bsc4I CCNNNNNNNGG 4 cut(s) 343, 1438, 1668, 1924
Bse1I ACTGG 7 cut(s) 346, 435, 569, 810, 1206, 1409, 1605
Bse21I CCTNAGG 1 cut(s) 795
BseBI CCWGG 5 cut(s) 406, 1031, 1571, 1875, 1976
BseDI CCNNGG 3 cut(s) 184, 405, 1873
BseGI GGATG 6 cut(s) 120, 165, 394, 1307, 1825, 1936
BseLI CCNNNNNNNGG 4 cut(s) 343, 1438, 1668, 1924
BseMII CTCAG 5 cut(s) 356, 726, 891, 1018, 1728
BseNI ACTGG 7 cut(s) 346, 435, 569, 810, 1206, 1409, 1605
BseRI GAGGAG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 1682
BseXI GCAGC 4 cut(s) 1689, 1720, 1789, 1817
BseYI CCCAGC 2 cut(s) 1808, 1884
BsgI GTGCAG 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 781
BshFI GGCC 7 cut(s) 132, 189, 626, 1245, 1316, 1490, 1680
BsiHKAI GWGCWC 3 cut(s) 56, 296, 1201
BsiHKCI CYCGRG 1 cut(s) 1668
BsiSI CCGG 2 cut(s) 1318, 1611
BslFI GGGAC 2 cut(s) 1415, 1872
BslI CCNNNNNNNGG 4 cut(s) 343, 1438, 1668, 1924
BsmAI GTCTC 3 cut(s) 904, 1007, 1101
BsmBI CGTCTC 1 cut(s) 1007
BsmFI GGGAC 2 cut(s) 1415, 1872
BsmI GAATGC 2 cut(s) 998, 1705
BsnI GGCC 7 cut(s) 132, 189, 626, 1245, 1316, 1490, 1680
BsoBI CYCGRG 1 cut(s) 1668
Bsp119I TTCGAA 1 cut(s) 1419
Bsp120I GGGCCC 1 cut(s) 1678
Bsp1286I GDGCHC 4 cut(s) 56, 296, 1201, 1682
Bsp1407I TGTACA 1 cut(s) 1425
Bsp68I TCGCGA 1 cut(s) 781
BspACI CCGC 8 cut(s) 27, 172, 205, 239, 602, 710, 1592, 1925
BspANI GGCC 7 cut(s) 132, 189, 626, 1245, 1316, 1490, 1680
BspCNI CTCAG 5 cut(s) 357, 727, 892, 1017, 1729
BspFNI CGCG 1 cut(s) 781
BspHI TCATGA 1 cut(s) 1087
BspLI GGNNCC 4 cut(s) 403, 844, 1679, 1680
BspMAI CTGCAG 1 cut(s) 1807
BspPI GGATC 5 cut(s) 816, 1420, 1602, 1935, 1938
BspT104I TTCGAA 1 cut(s) 1419
BsrBI CCGCTC 1 cut(s) 241
BsrGI TGTACA 1 cut(s) 1425
BsrI ACTGG 7 cut(s) 346, 435, 569, 810, 1206, 1409, 1605
BssECI CCNNGG 3 cut(s) 184, 405, 1873
BssNI GRCGYC 1 cut(s) 1903
Bst2UI CCWGG 5 cut(s) 406, 1031, 1571, 1875, 1976
Bst4CI ACNGT 6 cut(s) 556, 707, 989, 1048, 1162, 1425
Bst6I CTCTTC 1 cut(s) 1329
BstACI GRCGYC 1 cut(s) 1903
BstAPI GCANNNNNTGC 2 cut(s) 866, 1730
BstAUI TGTACA 1 cut(s) 1425
BstBI TTCGAA 1 cut(s) 1419
BstC8I GCNNGC 4 cut(s) 921, 1179, 1608, 1788
BstDEI CTNAG 8 cut(s) 365, 735, 795, 900, 1004, 1737, 1830, 1847
BstF5I GGATG 6 cut(s) 120, 165, 394, 1307, 1825, 1936
BstFNI CGCG 1 cut(s) 781
BstMAI GTCTC 3 cut(s) 904, 1007, 1101
BstMWI GCNNNNNNNGC 5 cut(s) 608, 866, 1589, 1612, 1730
BstNI CCWGG 5 cut(s) 406, 1031, 1571, 1875, 1976
BstNSI RCATGY 3 cut(s) 422, 923, 985
BstSCI CCNGG 7 cut(s) 404, 1029, 1316, 1569, 1610, 1873, 1974
BstSFI CTRYAG 1 cut(s) 1803
BstSLI GKGCMC 1 cut(s) 1682
BstUI CGCG 1 cut(s) 781
BstV1I GCAGC 4 cut(s) 1689, 1720, 1789, 1817
BstX2I RGATCY 4 cut(s) 808, 1412, 1594, 1943
BstYI RGATCY 4 cut(s) 808, 1412, 1594, 1943
Bsu36I CCTNAGG 1 cut(s) 795
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 7 cut(s) 132, 189, 626, 1245, 1316, 1490, 1680
BtgZI GCGATG 2 cut(s) 208, 1079
BtsCI GGATG 6 cut(s) 120, 165, 394, 1307, 1825, 1936
BtsIMutI CAGTG 3 cut(s) 712, 803, 1199
BtuMI TCGCGA 1 cut(s) 781
Cac8I GCNNGC 4 cut(s) 921, 1179, 1608, 1788
CciI TCATGA 1 cut(s) 1087
Cfr13I GGNCC 3 cut(s) 1315, 1678, 1679
CsiI ACCWGGT 1 cut(s) 1029
Csp6I GTAC 4 cut(s) 118, 334, 985, 1426
CspCI CAANNNNNGTGG 2 cut(s) 625, 660
CviQI GTAC 4 cut(s) 118, 334, 985, 1426
DdeI CTNAG 8 cut(s) 365, 735, 795, 900, 1004, 1737, 1830, 1847
EaeI YGGCCR 1 cut(s) 624
Eam1104I CTCTTC 1 cut(s) 1329
EarI CTCTTC 1 cut(s) 1329
EciI GGCGGA 1 cut(s) 1607
Eco24I GRGCYC 1 cut(s) 1682
Eco32I GATATC 1 cut(s) 768
Eco57I CTGAAG 1 cut(s) 1883
Eco81I CCTNAGG 1 cut(s) 795
Eco88I CYCGRG 1 cut(s) 1668
EcoO109I RGGNCCY 2 cut(s) 1678, 1679
EcoRI GAATTC 2 cut(s) 284, 1369
EcoRII CCWGG 5 cut(s) 404, 1029, 1569, 1873, 1974
EcoRV GATATC 1 cut(s) 768
EcoT22I ATGCAT 2 cut(s) 921, 1307
EcoT38I GRGCYC 1 cut(s) 1682
Esp3I CGTCTC 1 cut(s) 1007
FaqI GGGAC 2 cut(s) 1415, 1872
FauI CCCGC 3 cut(s) 34, 212, 595
FauNDI CATATG 1 cut(s) 1387
FbaI TGATCA 1 cut(s) 1090
FblI GTMKAC 1 cut(s) 1906
Fnu4HI GCNGC 4 cut(s) 1703, 1734, 1803, 1806
FokI GGATG 6 cut(s) 107, 152, 401, 1314, 1832, 1923
FriOI GRGCYC 1 cut(s) 1682
Fsp4HI GCNGC 4 cut(s) 1703, 1734, 1803, 1806
FspBI CTAG 3 cut(s) 1193, 1280, 1475
GluI GCNGC 4 cut(s) 1703, 1734, 1803, 1806
GsaI CCCAGC 2 cut(s) 1812, 1888
GsuI CTGGAG 2 cut(s) 1223, 1997
HaeIII GGCC 7 cut(s) 132, 189, 626, 1245, 1316, 1490, 1680
HapII CCGG 2 cut(s) 1318, 1611
Hin1I GRCGYC 1 cut(s) 1903
HincII GTYRAC 2 cut(s) 562, 1907
HindII GTYRAC 2 cut(s) 562, 1907
HindIII AAGCTT 2 cut(s) 1322, 1742
HinfI GANTC 7 cut(s) 235, 440, 545, 800, 1084, 1140, 1189
HpaI GTTAAC 1 cut(s) 562
HpaII CCGG 2 cut(s) 1318, 1611
HphI GGTGA 7 cut(s) 293, 331, 436, 503, 707, 737, 1045
Hpy166II GTNNAC 5 cut(s) 307, 562, 855, 1634, 1907
Hpy188I TCNGA 6 cut(s) 388, 946, 1123, 1711, 1919, 1948
Hpy188III TCNNGA 7 cut(s) 259, 289, 780, 1088, 1100, 1514, 1837
Hpy8I GTNNAC 5 cut(s) 307, 562, 855, 1634, 1907
Hpy99I CGWCG 1 cut(s) 1908
HpyAV CCTTC 7 cut(s) 134, 319, 366, 500, 592, 1432, 1511
HpyCH4III ACNGT 6 cut(s) 556, 707, 989, 1048, 1162, 1425
HpyCH4IV ACGT 2 cut(s) 1209, 1903
HpyF10VI GCNNNNNNNGC 5 cut(s) 608, 866, 1589, 1612, 1730
HpyF3I CTNAG 8 cut(s) 365, 735, 795, 900, 1004, 1737, 1830, 1847
HpySE526I ACGT 2 cut(s) 1209, 1903
Hsp92I GRCGYC 1 cut(s) 1903
Ksp22I TGATCA 1 cut(s) 1090
KspAI GTTAAC 1 cut(s) 562
LmnI GCTCC 5 cut(s) 111, 246, 401, 842, 1196
Lsp1109I GCAGC 4 cut(s) 1689, 1720, 1789, 1817
LweI GCATC 3 cut(s) 379, 1292, 1654
MabI ACCWGGT 1 cut(s) 1029
MaeI CTAG 3 cut(s) 1193, 1280, 1475
MaeII ACGT 2 cut(s) 1209, 1903
MaeIII GTNAC 6 cut(s) 550, 631, 1033, 1081, 1465, 1556
MbiI CCGCTC 1 cut(s) 241
MboII GAAGA 5 cut(s) 840, 867, 1346, 1534, 1876
MflI RGATCY 4 cut(s) 808, 1412, 1594, 1943
MhlI GDGCHC 4 cut(s) 56, 296, 1201, 1682
MluCI AATT 9 cut(s) 274, 284, 396, 484, 637, 870, 967, 1369, 1442
MlyI GAGTC 4 cut(s) 229, 1078, 1149, 1198
MmeI TCCRAC 2 cut(s) 681, 820
Mph1103I ATGCAT 2 cut(s) 921, 1307
MroXI GAANNNNTTC 2 cut(s) 940, 1529
MseI TTAA 7 cut(s) 71, 561, 890, 1071, 1248, 1266, 1967
MslI CAYNNNNRTG 5 cut(s) 174, 417, 924, 1310, 2010
MspA1I CMGCKG 1 cut(s) 1808
MspI CCGG 2 cut(s) 1318, 1611
MspR9I CCNGG 7 cut(s) 406, 1031, 1318, 1571, 1612, 1875, 1976
Mva1269I GAATGC 2 cut(s) 998, 1705
MvaI CCWGG 5 cut(s) 406, 1031, 1571, 1875, 1976
MvnI CGCG 1 cut(s) 781
MwoI GCNNNNNNNGC 5 cut(s) 608, 866, 1589, 1612, 1730
NciI CCSGG 2 cut(s) 1318, 1612
NdeI CATATG 1 cut(s) 1387
NlaIV GGNNCC 4 cut(s) 403, 844, 1679, 1680
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 3 cut(s) 631, 1033, 1081
NruI TCGCGA 1 cut(s) 781
NsiI ATGCAT 2 cut(s) 921, 1307
NspI RCATGY 3 cut(s) 422, 923, 985
NspV TTCGAA 1 cut(s) 1419
PaeI GCATGC 1 cut(s) 923
PagI TCATGA 1 cut(s) 1087
PciI ACATGT 1 cut(s) 981
PcsI WCGNNNNNNNCGW 1 cut(s) 1061
PctI GAATGC 2 cut(s) 998, 1705
PdmI GAANNNNTTC 2 cut(s) 940, 1529
PfeI GAWTC 3 cut(s) 440, 545, 800
PkrI GCNGC 4 cut(s) 1704, 1735, 1804, 1807
PleI GAGTC 4 cut(s) 229, 1078, 1148, 1197
PpsI GAGTC 4 cut(s) 229, 1078, 1148, 1197
PscI ACATGT 1 cut(s) 981
PsiI TTATAA 1 cut(s) 1748
Psp6I CCWGG 5 cut(s) 404, 1029, 1569, 1873, 1974
PspFI CCCAGC 2 cut(s) 1808, 1884
PspGI CCWGG 5 cut(s) 404, 1029, 1569, 1873, 1974
PspN4I GGNNCC 4 cut(s) 403, 844, 1679, 1680
PspOMI GGGCCC 1 cut(s) 1678
PspPI GGNCC 3 cut(s) 1315, 1678, 1679
PsrI GAACNNNNNNTAC 2 cut(s) 1199, 1231
PstI CTGCAG 1 cut(s) 1807
PsuI RGATCY 4 cut(s) 808, 1412, 1594, 1943
PvuII CAGCTG 1 cut(s) 1808
RruI TCGCGA 1 cut(s) 781
RsaI GTAC 4 cut(s) 119, 335, 986, 1427
RsaNI GTAC 4 cut(s) 118, 334, 985, 1426
RseI CAYNNNNRTG 5 cut(s) 174, 417, 924, 1310, 2010
SalI GTCGAC 1 cut(s) 1905
SaqAI TTAA 7 cut(s) 71, 561, 890, 1071, 1248, 1266, 1967
SatI GCNGC 4 cut(s) 1703, 1734, 1803, 1806
Sau96I GGNCC 3 cut(s) 1315, 1678, 1679
SchI GAGTC 4 cut(s) 229, 1078, 1149, 1198
ScrFI CCNGG 7 cut(s) 406, 1031, 1318, 1571, 1612, 1875, 1976
SduI GDGCHC 4 cut(s) 56, 296, 1201, 1682
SexAI ACCWGGT 1 cut(s) 1029
SfaNI GCATC 3 cut(s) 379, 1292, 1654
SfcI CTRYAG 1 cut(s) 1803
SfuI TTCGAA 1 cut(s) 1419
SmiMI CAYNNNNRTG 5 cut(s) 174, 417, 924, 1310, 2010
SmlI CTYRAG 3 cut(s) 49, 259, 1100
SmoI CTYRAG 3 cut(s) 49, 259, 1100
SphI GCATGC 1 cut(s) 923
Sse9I AATT 9 cut(s) 274, 284, 396, 484, 637, 870, 967, 1369, 1442
SsiI CCGC 8 cut(s) 27, 172, 205, 239, 602, 710, 1592, 1925
SspMI CTAG 3 cut(s) 1193, 1280, 1475
StyD4I CCNGG 7 cut(s) 404, 1029, 1316, 1569, 1610, 1873, 1974
TaaI ACNGT 6 cut(s) 556, 707, 989, 1048, 1162, 1425
TaiI ACGT 2 cut(s) 1212, 1906
TaqI TCGA 6 cut(s) 288, 394, 878, 1232, 1419, 1906
TasI AATT 9 cut(s) 274, 284, 396, 484, 637, 870, 967, 1369, 1442
TatI WGTACW 2 cut(s) 984, 1425
TfiI GAWTC 3 cut(s) 440, 545, 800
Tru1I TTAA 7 cut(s) 71, 561, 890, 1071, 1248, 1266, 1967
Tru9I TTAA 7 cut(s) 71, 561, 890, 1071, 1248, 1266, 1967
TscAI CASTG 3 cut(s) 712, 810, 1206
TseFI GTSAC 3 cut(s) 631, 1033, 1081
TseI GCWGC 4 cut(s) 1702, 1733, 1802, 1805
Tsp45I GTSAC 3 cut(s) 631, 1033, 1081
TspRI CASTG 3 cut(s) 712, 810, 1206
XapI RAATTY 3 cut(s) 274, 284, 1369
XceI RCATGY 3 cut(s) 422, 923, 985
XcmI CCANNNNNNNNNTGG 1 cut(s) 1881
XmiI GTMKAC 1 cut(s) 1906
XmnI GAANNNNTTC 2 cut(s) 940, 1529
XspI CTAG 3 cut(s) 1193, 1280, 1475
ZraI GACGTC 1 cut(s) 1904
Zsp2I ATGCAT 2 cut(s) 921, 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.