pycom10g21550

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0016778
Physical Location & Seq
Forward (+)
24137739 .. 24139883
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g21550.1

Sequence Viewer

Length: 2145 bp
ATGCCCCCGGTGGCCTCACTTCTGCCTGACATGTTTCAACGGTCACCACACATTCTCCACAACCCTCTCCTCCTCAAATTCCTTCACTTTCCCGCTACCCAAACAACCCCTTTCAGCACGCTCTCCTCCCTCTTCAGCCTCTGCACCGAACCTAGAAAGCTCCAGCAAATCCACGCCAGGTTCGTCCTTCACGGCCTGCACCAAAACCCAACACTCTCTTCCCAACTCATTGACCGCTATGCCAACCTTGGCCTCCTCGGTCGTTCCGAACAGGTCTTCAACTCTGTCACCGACCCAAGTCCGATTCTTTACGACGCAATCATCAGAAAGCTGTCGGAGTTTGGTCAGTTCGAGAAAACCCTTTTGGTTTACAATGATATGGTCATGAAATCAATTTACCCAGATCGAAATACCTACCCTTTTGTTTTGAAATCGTGTTCGGATGCTAGAATTGGGGGAAAGATTCATGGGCATGTGGTGAAATTGGGTTTTGATTCGTATGATTTGGTGGGTGCTGCTTTGGTTGATGTGTATGGAAATTATGGTGGATTTGGGAATGCAGGAGAGGTGGTTGATGAAATGTCTGTTTGGGAGGGTGGTTTGGATTTTTCGATTTCCGAGGCTTCGCGAAGTGGGAAAGCAATGGAGAAACTTGAGCCTGAATCGGTTAATTCAGTTACTGTGATTAACTTGCTGAGATCAAGTGTGGATTTGAACTCACTGAAGGCGGGAAAGGCTGTTCATTGTGTGGTGGTTGTGAGAAATTTGTGTGAGGATTTGTCTGTGAATACTGCATTGTTGTCTATGTATGCCAAGTTGGGTGATTTGAAATATGCAGAATTGTTGTTTGGAAAAATGCCTGACAAGGACTCTGTTGTTTGGAATATAATGATCTCAGCTTATGCTCGAAATCGGCACCCTAAGGAATCACTTGAGCTATTGAGATGCATGGGAAGATCAGGGGTTAGAGCTGATTTATTTACTGCAATCCCTGCAATTTCGTCAATTGCGCAGTTAAGAGCTACTGATTGGGGCAAGCAAATGCATGCTCATGTGATAAGAAATGGTTCAGATTATCAAGTTTCTATTCACAATTCTCTTATTGACATGTACTGTGCTTGTGATGATCTGAATTCGGCACTAAAGATTTTTGACTTGGTGCCGAACAAGACTGTGGTTTCATGGAGTGCAATGATCAAAGGATATGTAACCCATGATCGGAGTCTTGATGCGCTTTCTCTCTTCTCCAAGATGAAGGCTGATGGATTAGTTGTTGATTTCATTACAGTTATTAACATCTTGCCTGCTTGTGTGAACCTTGGGGCACTAGAGAATGTAAAGTACCTTCATGGGTACTCGATGAAACTCAGCCTTAACTCGCTTTCATCTGTTAATACGGCGTTTCTAGTCAGCTATGCGAAATGCGGATGCATAGAGATGGCCCGGAAGCTTTTTGACGAAGAAAACATCAACACGAAAGATGTAATCACGTGGAATTCTATGATTAGCGCGTATGCTAAGCATGGAGACTGGTCTCGTTCTTTCGAGTTGTACCACCAAATGAAGAAATCGAGCTTGAAACCAGATCAAGTAACCTTTCTCGGAGTACTGACAGCCTGTGTAAATGCAGGTCTTGTTCAAGAAGGAAAGGAATGTTTCAAGGAGATGGTTGAAAAATACGATTGCCAACCAAGTCATGAACACTATGCTTGCATGGTGGATCTGCTAGGGCGTGCCGGGCATGTCAACGAAGCCAGAGAGCTAGTAAAATCTATGCCTTTCAGACCGGATGCTCGGGTTTGGGGGCCTTTGTTGAGCGCGTGCAAGTTGCATTCGGAGACTGGAGTTGCGGAGTTCGCTGCTGAGAAGCTTATAACCATGGAACCGAAAAATCCCGGAAATTATATATTGCTTGCCAACATATATGCTGCAGATGGAAAGTGGGATAGAGTTGCTAAGATGAGGAGTTCCCTCAGAAACTTAGGCCTGAAGAAAACTCCCGGATTGAGCTGGGTTGAGATAAACGGACTTCAACATGAATTCCGAGTAGCGGACCGTTCTCATCCGAGATCCGACGGTATATATGCCATATTAAGAAACCTGGAGTGGGAAATCAAGGACGCAAGAGACAGAGATAGCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

715

Amino Acids

79.62

Weight (kDa)

7.58

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 289 - 328 3.1e-06 PPR repeat family
PPR PF01535 292 - 322 4.9e-07 PPR repeat
PPR_2 PF13041 391 - 437 4.3e-06 PPR repeat family
PPR PF01535 393 - 423 9.7e-06 PPR repeat
PPR_2 PF13041 493 - 541 9.8e-14 PPR repeat family
PPR PF01535 496 - 524 9e-09 PPR repeat
PPR_long PF17177 502 - 657 3.2e-07 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 611 - 673 7.8e-21 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016778)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05170
malus_domestica MD10G1259000.v1.1
prunus_persica Prupe.4G084300_v2.0.a1
pyrus_communis pycom10g21550
rosa_chinensis RchiOBHm_Chr5g0014581
rosa_laevigata RLG00000032130
rosa_multiflora Rmu_co8518221.1_g000001 Rmu_sc0000120.1_g000005
rosa_roxburghii Rroxscaffold_1G00061900
rosa_rugosa Rorug05G0019600
rosa_samantha Rh5AG114800 Rh5BG111700 Rh5CG123200
rosa_wichuraiana Rw5G009940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1874
Acc16I TGCGCA 1 cut(s) 1011
Acc36I ACCTGC 1 cut(s) 1619
AccB1I GGYRCC 2 cut(s) 915, 1159
AccII CGCG 3 cut(s) 628, 1511, 1820
AciI CCGC 6 cut(s) 93, 235, 728, 1425, 1850, 2051
AclWI GGATC 2 cut(s) 1728, 2064
AcsI RAATTY 5 cut(s) 77, 763, 1132, 1495, 2039
AcuI CTGAAG 3 cut(s) 118, 743, 2009
AcvI CACGTG 1 cut(s) 1491
AfaI GTAC 5 cut(s) 1112, 1343, 1355, 1553, 1608
AfiI CCNNNNNNNGG 3 cut(s) 1218, 2050, 2107
AflIII ACRYGT 2 cut(s) 30, 1107
AjnI CCWGG 2 cut(s) 176, 2100
AjuI GAANNNNNNNTTGG 6 cut(s) 202, 234, 347, 379, 831, 863
AloI GAACNNNNNNTCC 2 cut(s) 723, 755
Alw26I GTCTC 4 cut(s) 1521, 1539, 1832, 2121
AlwI GGATC 2 cut(s) 1728, 2064
AlwNI CAGNNNCTG 2 cut(s) 141, 680
Ama87I CYCGRG 1 cut(s) 1794
AoxI GGCC 6 cut(s) 12, 193, 250, 1440, 1805, 1984
ApeKI GCWGC 3 cut(s) 515, 1859, 1928
ApoI RAATTY 5 cut(s) 77, 763, 1132, 1495, 2039
Asp700I GAANNNNTTC 1 cut(s) 1066
AspLEI GCGC 4 cut(s) 1012, 1234, 1511, 1820
AspS9I GGNCC 3 cut(s) 1441, 1805, 2053
AsuC2I CCSGG 5 cut(s) 8, 1444, 1738, 1896, 2001
AsuHPI GGTGA 4 cut(s) 36, 280, 490, 833
AvaI CYCGRG 1 cut(s) 1794
AvaII GGWCC 1 cut(s) 2053
AxyI CCTNAGG 1 cut(s) 921
BaeGI GKGCMC 1 cut(s) 1327
BanI GGYRCC 2 cut(s) 915, 1159
BarI GAAGNNNNNNTAC 2 cut(s) 1329, 1361
BbrPI CACGTG 1 cut(s) 1491
BbsI GAAGAC 1 cut(s) 268
BbvI GCAGC 3 cut(s) 502, 1846, 1915
BccI CCATC 4 cut(s) 1256, 1432, 1660, 1928
BceAI ACGGC 2 cut(s) 208, 1413
BciT130I CCWGG 2 cut(s) 178, 2102
BclI TGATCA 1 cut(s) 1194
BcnI CCSGG 5 cut(s) 8, 1444, 1738, 1896, 2001
BcoDI GTCTC 4 cut(s) 1521, 1539, 1832, 2121
BfaI CTAG 6 cut(s) 153, 447, 1328, 1406, 1727, 1763
BfmI CTRYAG 1 cut(s) 1929
BfuAI ACCTGC 1 cut(s) 1619
BisI GCNGC 3 cut(s) 516, 1860, 1929
BlpI GCTNAGC 1 cut(s) 1518
BlsI GCNGC 3 cut(s) 517, 1861, 1930
BmcAI AGTACT 1 cut(s) 1608
Bme1390I CCNGG 7 cut(s) 8, 178, 1444, 1738, 1896, 2001, 2102
Bme18I GGWCC 1 cut(s) 2053
BmeT110I CYCGRG 1 cut(s) 1794
BmgT120I GGNCC 3 cut(s) 1441, 1805, 2053
BmiI GGNNCC 4 cut(s) 917, 1161, 1806, 1884
BmrFI CCNGG 7 cut(s) 8, 178, 1444, 1738, 1896, 2001, 2102
BmsI GCATC 5 cut(s) 433, 935, 1219, 1418, 1780
BoxI GACNNNNGTC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 268
BpmI CTGGAG 3 cut(s) 146, 1863, 2123
Bpu1102I GCTNAGC 1 cut(s) 1518
BpuEI CTTGAG 2 cut(s) 674, 953
BpuMI CCSGG 5 cut(s) 8, 1444, 1738, 1896, 2001
BsaAI YACGTR 1 cut(s) 1491
BsaI GGTCTC 1 cut(s) 1539
BsaJI CCNNGG 6 cut(s) 6, 247, 256, 618, 1318, 1878
BsaWI WCCGGW 1 cut(s) 1786
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 555, 585
Bsc4I CCNNNNNNNGG 3 cut(s) 1218, 2050, 2107
Bse1I ACTGG 2 cut(s) 1535, 1846
Bse21I CCTNAGG 1 cut(s) 921
Bse3DI GCAATG 2 cut(s) 648, 1197
BseBI CCWGG 2 cut(s) 178, 2102
BseDI CCNNGG 6 cut(s) 6, 247, 256, 618, 1318, 1878
BseGI GGATG 4 cut(s) 448, 1433, 1795, 2062
BseLI CCNNNNNNNGG 3 cut(s) 1218, 2050, 2107
BseMI GCAATG 2 cut(s) 648, 1197
BseMII CTCAG 5 cut(s) 686, 909, 1381, 1854, 1987
BseNI ACTGG 2 cut(s) 1535, 1846
BseRI GAGGAG 5 cut(s) 59, 62, 115, 245, 1978
BseSI GKGCMC 1 cut(s) 1327
BseXI GCAGC 3 cut(s) 502, 1846, 1915
BseYI CCCAGC 1 cut(s) 2010
BsgI GTGCAG 2 cut(s) 127, 182
Bsh1236I CGCG 3 cut(s) 628, 1511, 1820
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 6 cut(s) 14, 195, 252, 1442, 1807, 1986
BshNI GGYRCC 2 cut(s) 915, 1159
BsiEI CGRYCG 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 1794
BsiSI CCGG 6 cut(s) 8, 1444, 1737, 1787, 1896, 2001
BslI CCNNNNNNNGG 3 cut(s) 1218, 2050, 2107
BsmAI GTCTC 4 cut(s) 1521, 1539, 1832, 2121
BsmI GAATGC 2 cut(s) 562, 1831
BsnI GGCC 6 cut(s) 14, 195, 252, 1442, 1807, 1986
Bso31I GGTCTC 1 cut(s) 1539
BsoBI CYCGRG 1 cut(s) 1794
Bsp1286I GDGCHC 1 cut(s) 1327
Bsp1720I GCTNAGC 1 cut(s) 1518
Bsp19I CCATGG 1 cut(s) 1878
Bsp68I TCGCGA 1 cut(s) 628
BspACI CCGC 6 cut(s) 93, 235, 728, 1425, 1850, 2051
BspANI GGCC 6 cut(s) 14, 195, 252, 1442, 1807, 1986
BspCNI CTCAG 5 cut(s) 687, 908, 1380, 1855, 1986
BspFNI CGCG 3 cut(s) 628, 1511, 1820
BspHI TCATGA 2 cut(s) 384, 1696
BspLI GGNNCC 4 cut(s) 917, 1161, 1806, 1884
BspMAI CTGCAG 1 cut(s) 1933
BspMI ACCTGC 1 cut(s) 1619
BspPI GGATC 2 cut(s) 1728, 2064
BspT107I GGYRCC 2 cut(s) 915, 1159
BspTNI GGTCTC 1 cut(s) 1539
BsrDI GCAATG 2 cut(s) 648, 1197
BsrI ACTGG 2 cut(s) 1535, 1846
BssECI CCNNGG 6 cut(s) 6, 247, 256, 618, 1318, 1878
BssT1I CCWWGG 3 cut(s) 247, 1318, 1878
Bst2UI CCWGG 2 cut(s) 178, 2102
Bst4CI ACNGT 7 cut(s) 42, 682, 1115, 1174, 1288, 2057, 2078
Bst6I CTCTTC 3 cut(s) 137, 223, 1247
BstAPI GCANNNNNTGC 1 cut(s) 992
BstBAI YACGTR 1 cut(s) 1491
BstC8I GCNNGC 9 cut(s) 119, 197, 1037, 1047, 1305, 1711, 1734, 1822, 1914
BstDEI CTNAG 9 cut(s) 695, 895, 921, 1367, 1518, 1863, 1956, 1973, 1981
BstDSI CCRYGG 1 cut(s) 1878
BstEII GGTNACC 1 cut(s) 42
BstF5I GGATG 4 cut(s) 448, 1433, 1795, 2062
BstFNI CGCG 3 cut(s) 628, 1511, 1820
BstHHI GCGC 4 cut(s) 1012, 1234, 1511, 1820
BstMAI GTCTC 4 cut(s) 1521, 1539, 1832, 2121
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 4 cut(s) 734, 992, 1738, 1856
BstNI CCWGG 2 cut(s) 178, 2102
BstNSI RCATGY 5 cut(s) 34, 476, 1049, 1111, 1745
BstPAI GACNNNNGTC 1 cut(s) 297
BstPI GGTNACC 1 cut(s) 42
BstSCI CCNGG 7 cut(s) 6, 176, 1442, 1736, 1894, 1999, 2100
BstSFI CTRYAG 1 cut(s) 1929
BstSLI GKGCMC 1 cut(s) 1327
BstUI CGCG 3 cut(s) 628, 1511, 1820
BstV1I GCAGC 3 cut(s) 502, 1846, 1915
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 2 cut(s) 1720, 2069
BstYI RGATCY 2 cut(s) 1720, 2069
Bsu36I CCTNAGG 1 cut(s) 921
BsuRI GGCC 6 cut(s) 14, 195, 252, 1442, 1807, 1986
BtgI CCRYGG 1 cut(s) 1878
BtsCI GGATG 4 cut(s) 448, 1433, 1795, 2062
BtsIMutI CAGTG 1 cut(s) 719
BtuMI TCGCGA 1 cut(s) 628
BveI ACCTGC 1 cut(s) 1619
Cac8I GCNNGC 9 cut(s) 119, 197, 1037, 1047, 1305, 1711, 1734, 1822, 1914
CaiI CAGNNNCTG 2 cut(s) 141, 680
CciI TCATGA 2 cut(s) 384, 1696
CfoI GCGC 4 cut(s) 1012, 1234, 1511, 1820
Cfr13I GGNCC 3 cut(s) 1441, 1805, 2053
CpoI CGGWCCG 1 cut(s) 2053
CseI GACGC 2 cut(s) 323, 2129
Csp6I GTAC 5 cut(s) 1111, 1342, 1354, 1552, 1607
CspI CGGWCCG 1 cut(s) 2053
CviQI GTAC 5 cut(s) 1111, 1342, 1354, 1552, 1607
DdeI CTNAG 9 cut(s) 695, 895, 921, 1367, 1518, 1863, 1956, 1973, 1981
Eam1104I CTCTTC 3 cut(s) 137, 223, 1247
EarI CTCTTC 3 cut(s) 137, 223, 1247
Eco130I CCWWGG 3 cut(s) 247, 1318, 1878
Eco147I AGGCCT 1 cut(s) 1986
Eco31I GGTCTC 1 cut(s) 1539
Eco47I GGWCC 1 cut(s) 2053
Eco57I CTGAAG 3 cut(s) 118, 743, 2009
Eco72I CACGTG 1 cut(s) 1491
Eco81I CCTNAGG 1 cut(s) 921
Eco88I CYCGRG 1 cut(s) 1794
Eco91I GGTNACC 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 1805
EcoO65I GGTNACC 1 cut(s) 42
EcoRI GAATTC 3 cut(s) 1132, 1495, 2039
EcoRII CCWGG 2 cut(s) 176, 2100
EcoT14I CCWWGG 3 cut(s) 247, 1318, 1878
EcoT22I ATGCAT 3 cut(s) 950, 1047, 1433
ErhI CCWWGG 3 cut(s) 247, 1318, 1878
FauI CCCGC 2 cut(s) 100, 721
FbaI TGATCA 1 cut(s) 1194
Fnu4HI GCNGC 3 cut(s) 516, 1860, 1929
FokI GGATG 4 cut(s) 455, 1440, 1802, 2049
Fsp4HI GCNGC 3 cut(s) 516, 1860, 1929
FspBI CTAG 6 cut(s) 153, 447, 1328, 1406, 1727, 1763
FspI TGCGCA 1 cut(s) 1011
GlaI GCGC 4 cut(s) 1011, 1233, 1510, 1819
GluI GCNGC 3 cut(s) 516, 1860, 1929
GsaI CCCAGC 1 cut(s) 2014
GsuI CTGGAG 3 cut(s) 146, 1863, 2123
HaeIII GGCC 6 cut(s) 14, 195, 252, 1442, 1807, 1986
HapII CCGG 6 cut(s) 8, 1444, 1737, 1787, 1896, 2001
HgaI GACGC 2 cut(s) 323, 2129
HhaI GCGC 4 cut(s) 1012, 1234, 1511, 1820
Hin6I GCGC 4 cut(s) 1010, 1232, 1509, 1818
HinP1I GCGC 4 cut(s) 1010, 1232, 1509, 1818
HincII GTYRAC 1 cut(s) 1747
HindII GTYRAC 1 cut(s) 1747
HindIII AAGCTT 2 cut(s) 1448, 1868
HinfI GANTC 7 cut(s) 304, 463, 494, 662, 869, 926, 1222
HpaII CCGG 6 cut(s) 8, 1444, 1737, 1787, 1896, 2001
HphI GGTGA 4 cut(s) 36, 280, 490, 833
Hpy166II GTNNAC 3 cut(s) 370, 1315, 1747
Hpy188III TCNNGA 6 cut(s) 352, 385, 627, 1226, 1640, 1697
Hpy8I GTNNAC 3 cut(s) 370, 1315, 1747
Hpy99I CGWCG 2 cut(s) 317, 2078
HpyAV CCTTC 6 cut(s) 92, 197, 718, 1249, 1355, 1637
HpyCH4III ACNGT 7 cut(s) 42, 682, 1115, 1174, 1288, 2057, 2078
HpyCH4IV ACGT 1 cut(s) 1490
HpyF10VI GCNNNNNNNGC 4 cut(s) 734, 992, 1738, 1856
HpyF3I CTNAG 9 cut(s) 695, 895, 921, 1367, 1518, 1863, 1956, 1973, 1981
HpySE526I ACGT 1 cut(s) 1490
HspAI GCGC 4 cut(s) 1010, 1232, 1509, 1818
Ksp22I TGATCA 1 cut(s) 1194
LmnI GCTCC 1 cut(s) 165
Lsp1109I GCAGC 3 cut(s) 502, 1846, 1915
LweI GCATC 5 cut(s) 433, 935, 1219, 1418, 1780
MaeI CTAG 6 cut(s) 153, 447, 1328, 1406, 1727, 1763
MaeII ACGT 1 cut(s) 1490
MaeIII GTNAC 5 cut(s) 42, 286, 676, 1207, 1591
MboII GAAGA 8 cut(s) 124, 210, 268, 966, 1234, 1472, 1576, 2002
MfeI CAATTG 1 cut(s) 1005
MflI RGATCY 2 cut(s) 1720, 2069
MhlI GDGCHC 1 cut(s) 1327
MlyI GAGTC 2 cut(s) 863, 1231
MmeI TCCRAC 2 cut(s) 315, 2097
Mph1103I ATGCAT 3 cut(s) 950, 1047, 1433
MroXI GAANNNNTTC 1 cut(s) 1066
MseI TTAA 7 cut(s) 669, 687, 1016, 1293, 1374, 1392, 2093
MslI CAYNNNNRTG 3 cut(s) 471, 1050, 1436
MspI CCGG 6 cut(s) 8, 1444, 1737, 1787, 1896, 2001
MspR9I CCNGG 7 cut(s) 8, 178, 1444, 1738, 1896, 2001, 2102
MunI CAATTG 1 cut(s) 1005
Mva1269I GAATGC 2 cut(s) 562, 1831
MvaI CCWGG 2 cut(s) 178, 2102
MvnI CGCG 3 cut(s) 628, 1511, 1820
MwoI GCNNNNNNNGC 4 cut(s) 734, 992, 1738, 1856
NciI CCSGG 5 cut(s) 8, 1444, 1738, 1896, 2001
NcoI CCATGG 1 cut(s) 1878
NlaIV GGNNCC 4 cut(s) 917, 1161, 1806, 1884
NmuCI GTSAC 2 cut(s) 42, 286
NruI TCGCGA 1 cut(s) 628
NsbI TGCGCA 1 cut(s) 1011
NsiI ATGCAT 3 cut(s) 950, 1047, 1433
NspI RCATGY 5 cut(s) 34, 476, 1049, 1111, 1745
PaeI GCATGC 1 cut(s) 1049
PagI TCATGA 2 cut(s) 384, 1696
PceI AGGCCT 1 cut(s) 1986
PciI ACATGT 2 cut(s) 30, 1107
PcsI WCGNNNNNNNCGW 2 cut(s) 180, 264
PctI GAATGC 2 cut(s) 562, 1831
PdmI GAANNNNTTC 1 cut(s) 1066
PfeI GAWTC 5 cut(s) 304, 463, 494, 662, 926
PfoI TCCNGGA 2 cut(s) 1894, 1999
PkrI GCNGC 3 cut(s) 517, 1861, 1930
PleI GAGTC 2 cut(s) 863, 1230
PmaCI CACGTG 1 cut(s) 1491
PmlI CACGTG 1 cut(s) 1491
PpsI GAGTC 2 cut(s) 863, 1230
Ppu21I YACGTR 1 cut(s) 1491
PscI ACATGT 2 cut(s) 30, 1107
PshAI GACNNNNGTC 1 cut(s) 297
PsiI TTATAA 1 cut(s) 1874
Psp6I CCWGG 2 cut(s) 176, 2100
PspCI CACGTG 1 cut(s) 1491
PspEI GGTNACC 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 2010
PspGI CCWGG 2 cut(s) 176, 2100
PspN4I GGNNCC 4 cut(s) 917, 1161, 1806, 1884
PspPI GGNCC 3 cut(s) 1441, 1805, 2053
PstI CTGCAG 1 cut(s) 1933
PstNI CAGNNNCTG 2 cut(s) 141, 680
PsuI RGATCY 2 cut(s) 1720, 2069
RruI TCGCGA 1 cut(s) 628
RsaI GTAC 5 cut(s) 1112, 1343, 1355, 1553, 1608
RsaNI GTAC 5 cut(s) 1111, 1342, 1354, 1552, 1607
RseI CAYNNNNRTG 3 cut(s) 471, 1050, 1436
Rsr2I CGGWCCG 1 cut(s) 2053
RsrII CGGWCCG 1 cut(s) 2053
SaqAI TTAA 7 cut(s) 669, 687, 1016, 1293, 1374, 1392, 2093
SatI GCNGC 3 cut(s) 516, 1860, 1929
Sau96I GGNCC 3 cut(s) 1441, 1805, 2053
ScaI AGTACT 1 cut(s) 1608
SchI GAGTC 2 cut(s) 863, 1231
ScrFI CCNGG 7 cut(s) 8, 178, 1444, 1738, 1896, 2001, 2102
SduI GDGCHC 1 cut(s) 1327
SfaNI GCATC 5 cut(s) 433, 935, 1219, 1418, 1780
SfcI CTRYAG 1 cut(s) 1929
SinI GGWCC 1 cut(s) 2053
SmiMI CAYNNNNRTG 3 cut(s) 471, 1050, 1436
SmlI CTYRAG 2 cut(s) 653, 932
SmoI CTYRAG 2 cut(s) 653, 932
SphI GCATGC 1 cut(s) 1049
SseBI AGGCCT 1 cut(s) 1986
SsiI CCGC 6 cut(s) 93, 235, 728, 1425, 1850, 2051
SspMI CTAG 6 cut(s) 153, 447, 1328, 1406, 1727, 1763
StuI AGGCCT 1 cut(s) 1986
StyD4I CCNGG 7 cut(s) 6, 176, 1442, 1736, 1894, 1999, 2100
StyI CCWWGG 3 cut(s) 247, 1318, 1878
TaaI ACNGT 7 cut(s) 42, 682, 1115, 1174, 1288, 2057, 2078
TaiI ACGT 1 cut(s) 1493
TaqI TCGA 7 cut(s) 351, 406, 611, 907, 1358, 1545, 1571
TaqII GACCGA 1 cut(s) 248
TatI WGTACW 2 cut(s) 1110, 1606
TfiI GAWTC 5 cut(s) 304, 463, 494, 662, 926
Tru1I TTAA 7 cut(s) 669, 687, 1016, 1293, 1374, 1392, 2093
Tru9I TTAA 7 cut(s) 669, 687, 1016, 1293, 1374, 1392, 2093
TscAI CASTG 1 cut(s) 726
TseFI GTSAC 2 cut(s) 42, 286
TseI GCWGC 3 cut(s) 515, 1859, 1928
Tsp45I GTSAC 2 cut(s) 42, 286
TspGWI ACGGA 1 cut(s) 2040
TspRI CASTG 1 cut(s) 726
VpaK11BI GGWCC 1 cut(s) 2053
XapI RAATTY 5 cut(s) 77, 763, 1132, 1495, 2039
XceI RCATGY 5 cut(s) 34, 476, 1049, 1111, 1745
XmnI GAANNNNTTC 1 cut(s) 1066
XspI CTAG 6 cut(s) 153, 447, 1328, 1406, 1727, 1763
ZrmI AGTACT 1 cut(s) 1608
Zsp2I ATGCAT 3 cut(s) 950, 1047, 1433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.