Rorug05G0019600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016778
Physical Location & Seq
Forward (+)
1313592 .. 1317607
4016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0019600.1

Sequence Viewer

Length: 1548 bp
ATGGGAACCAGCTTCCAAGGGGTTGTGTTCGTTTCGAGCTTGTTGTTGTCTCTGGTGTCGTGTGCAGCCCCACCCAGTGATGGGTTGTTTAGGATTGGACTGAAAAAGGTGAAGTTGGATGCGAATGAGCGGCTTGCTGCAGCGGTTGAATACAGGAATGGGGAGGATTTGCGGGGTTCGATTAGGAAGTATGGTTTCCCTTCTAATCTGGGAGACGCTGAGGGGGAGGATGTTGATATTGTCAAATTAAAGAACTACTTGGATGCTCAGTACTATGGTGAGATAGCTATTGGCACTCCCCCTCAGCCGTTCACTGTGATTTTCGACACTGGCAGCTCTAATCTGTGGGTTCCGTCGAACAAGTGTTATTTCTCGGTTGCGTGCTACTTCCATGCCAAGTACAAGTCAAGCCAATCGAGTACATACAAGAAGAATGGGAAATCTGCTTCCATCCAGTATGGTACTGGAGCTATTTCAGGTTTCTTTAGTAATGACAATGTTAAAGTTGGGGACCTCGTCGTGAAAGACCAGGAATTTATTGAAGCAACTAGTGAGCCTGGTCTAACATTTTTGGCTGCCAAGTTTGATGGGTTATTAGGCCTTGGATTTCAAGAGATTTCGGTTGGAAATGCTGTCCCAGTGTGGTACAACATGATTAAGCAAGGGCTTATCAAGGAACCAGTGTTTTCTTTTTGGATGAACCGCAATGCAGCAGCACAAGAAGGTGGTGAACTTGTGTTTGGGGGAGTTGATCCCCATCACTTCAAGGGAAAGCACACATATGTTCCTGTAACACAGAAAGGCTATTGGCAGTTCGACATGGGTGATGTTCTTATTGGTGATAAACCAACTGGATATTGTGCTGGTGGTTGTCATGCAATTGCAGATTCTGGAACTTCTCTTTTGGCTGGTCCAACGACAGTGGTTACATTGATAAATAAAGCCATTGGAGCCAATGGGGTTGTTAGCCAGGAATGCAAGGCCGTTGTTCAACAGTATGGTCAAACCATTATGGAGCTGCTCTTGGCTGAGGTTCAACCAAAGAAGATCTGCTCCCAAATTGGAGTGTGCACCTTTGATGGGACTCGTAGTGTTAGTATGGGCATTGAGAGTGTGGTGGATAAGAACCGTGGAAAATCTTCTGGAGTTCTTCATGATGCTTCATGCTCTGCTTGTGAGATGGCAGTTGTCTGGATGCAAAACCAGCTTAAGCAGAATCAGACCCAGGATTATATTTTGAACTATGTTAATGAGCTTTGTGATCAAATGCCAAGCCCAAATGGACAATCGGCTGTTGACTGCCAACGTCTTTCTTCCATGCCTACCATTTCCTTCACCATTGGTGGTAAAGTTTTTCCACTCACCCCAGAGGAGTATGTACTCAAGGTGGGCGAGGGTCCACAAGCCCAGTGCATAAGTGGCTTCACTAGTATGGACATTCCTCCTCCCCGGGGACCTCTCTGGATCCTGGGAGACGTCTTCATGGGTCGCTACCACACTGTCTTTGATTATGGTAATATGAGAGTTGGATTTGCAAAGGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

515

Amino Acids

55.69

Weight (kDa)

5.88

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 90 - 514 2.1e-117 Eukaryotic aspartyl protease
TAXi_N PF14543 91 - 249 7.5e-12 Xylanase inhibitor N-terminal
SapB_2 PF03489 324 - 357 8.4e-12 Saposin-like type B, region 2
SapB_1 PF05184 388 - 424 1.2e-13 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016778)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05170
malus_domestica MD10G1259000.v1.1
prunus_persica Prupe.4G084300_v2.0.a1
pyrus_communis pycom10g21550
rosa_chinensis RchiOBHm_Chr5g0014581
rosa_laevigata RLG00000032130
rosa_multiflora Rmu_co8518221.1_g000001 Rmu_sc0000120.1_g000005
rosa_roxburghii Rroxscaffold_1G00061900
rosa_rugosa Rorug05G0019600
rosa_samantha Rh5AG114800 Rh5BG111700 Rh5CG123200
rosa_wichuraiana Rw5G009940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1479
AccBSI CCGCTC 1 cut(s) 130
AciI CCGC 4 cut(s) 130, 143, 172, 703
AclWI GGATC 3 cut(s) 746, 1459, 1472
AcsI RAATTY 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 1476
AdeI CACNNNGTG 1 cut(s) 77
AfaI GTAC 6 cut(s) 272, 401, 421, 463, 647, 1380
AfiI CCNNNNNNNGG 4 cut(s) 80, 81, 1080, 1451
AflII CTTAAG 1 cut(s) 1208
AgsI TTSAA 7 cut(s) 149, 542, 611, 766, 992, 1037, 1240
AhlI ACTAGT 2 cut(s) 548, 1427
AjnI CCWGG 5 cut(s) 528, 556, 969, 1224, 1467
AjuI GAANNNNNNNTTGG 2 cut(s) 723, 755
AluBI AGCT 8 cut(s) 12, 39, 287, 336, 470, 1018, 1207, 1255
AluI AGCT 8 cut(s) 12, 39, 287, 336, 470, 1018, 1207, 1255
Alw21I GWGCWC 1 cut(s) 1073
Alw26I GTCTC 3 cut(s) 54, 207, 1467
Alw44I GTGCAC 1 cut(s) 1069
AlwI GGATC 3 cut(s) 746, 1459, 1472
AlwNI CAGNNNCTG 1 cut(s) 890
Ama87I CYCGRG 1 cut(s) 1449
AoxI GGCC 2 cut(s) 598, 981
ApaLI GTGCAC 1 cut(s) 1069
ApeKI GCWGC 9 cut(s) 65, 137, 140, 333, 575, 710, 713, 1018, 1541
ApoI RAATTY 1 cut(s) 533
Asp700I GAANNNNTTC 1 cut(s) 1138
AspS9I GGNCC 4 cut(s) 511, 911, 1397, 1454
AsuC2I CCSGG 2 cut(s) 1450, 1451
AsuHPI GGTGA 7 cut(s) 121, 290, 740, 836, 851, 1327, 1354
AvaI CYCGRG 1 cut(s) 1449
AvaII GGWCC 4 cut(s) 511, 911, 1397, 1454
BaeGI GKGCMC 1 cut(s) 1073
BamHI GGATCC 1 cut(s) 1464
BbsI GAAGAC 1 cut(s) 1471
Bbv12I GWGCWC 1 cut(s) 1073
BbvCI CCTCAGC 3 cut(s) 219, 303, 1029
BbvI GCAGC 9 cut(s) 77, 124, 152, 345, 562, 722, 725, 1005, 1528
BccI CCATC 6 cut(s) 74, 458, 581, 765, 1073, 1174
BceAI ACGGC 2 cut(s) 292, 968
BciT130I CCWGG 5 cut(s) 530, 558, 971, 1226, 1469
BclI TGATCA 1 cut(s) 1261
BcnI CCSGG 2 cut(s) 1450, 1451
BcoDI GTCTC 3 cut(s) 54, 207, 1467
BcuI ACTAGT 2 cut(s) 548, 1427
BfaI CTAG 2 cut(s) 549, 1428
BfmI CTRYAG 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 1208
BglII AGATCT 1 cut(s) 1047
BmcAI AGTACT 1 cut(s) 272
Bme1390I CCNGG 7 cut(s) 530, 558, 971, 1226, 1450, 1451, 1469
Bme18I GGWCC 4 cut(s) 511, 911, 1397, 1454
BmeT110I CYCGRG 1 cut(s) 1449
BmgT120I GGNCC 4 cut(s) 511, 911, 1397, 1454
BmiI GGNNCC 8 cut(s) 7, 351, 512, 678, 952, 1398, 1455, 1466
BmrFI CCNGG 7 cut(s) 530, 558, 971, 1226, 1450, 1451, 1469
BmrI ACTGGG 3 cut(s) 69, 632, 1402
BmsI GCATC 4 cut(s) 109, 253, 1147, 1185
BmuI ACTGGG 3 cut(s) 69, 632, 1402
BpiI GAAGAC 1 cut(s) 1471
BpmI CTGGAG 2 cut(s) 486, 1164
Bpu10I CCTNAGC 3 cut(s) 219, 303, 1029
BpuEI CTTGAG 1 cut(s) 1367
BpuMI CCSGG 2 cut(s) 1450, 1451
BsaBI GATNNNNATC 1 cut(s) 756
BsaHI GRCGYC 1 cut(s) 1476
BsaJI CCNNGG 8 cut(s) 16, 601, 1129, 1224, 1448, 1449, 1450, 1468
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 81, 1080, 1451
Bse1I ACTGG 8 cut(s) 75, 334, 454, 469, 638, 680, 856, 1408
Bse3DI GCAATG 1 cut(s) 712
Bse8I GATNNNNATC 1 cut(s) 756
BseBI CCWGG 5 cut(s) 530, 558, 971, 1226, 1469
BseDI CCNNGG 8 cut(s) 16, 601, 1129, 1224, 1448, 1449, 1450, 1468
BseGI GGATG 6 cut(s) 124, 235, 268, 450, 702, 1200
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 4 cut(s) 80, 81, 1080, 1451
BseMI GCAATG 1 cut(s) 712
BseMII CTCAG 4 cut(s) 210, 281, 317, 1020
BseNI ACTGG 8 cut(s) 75, 334, 454, 469, 638, 680, 856, 1408
BseRI GAGGAG 2 cut(s) 1385, 1434
BseSI GKGCMC 1 cut(s) 1073
BseXI GCAGC 9 cut(s) 77, 124, 152, 345, 562, 722, 725, 1005, 1528
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 2 cut(s) 600, 983
BsiHKAI GWGCWC 1 cut(s) 1073
BsiHKCI CYCGRG 1 cut(s) 1449
BsiSI CCGG 1 cut(s) 1450
BslFI GGGAC 4 cut(s) 524, 620, 1096, 1467
BslI CCNNNNNNNGG 4 cut(s) 80, 81, 1080, 1451
BsmAI GTCTC 3 cut(s) 54, 207, 1467
BsmBI CGTCTC 2 cut(s) 207, 1467
BsmFI GGGAC 4 cut(s) 524, 620, 1096, 1467
BsmI GAATGC 1 cut(s) 980
BsnI GGCC 2 cut(s) 600, 983
BsoBI CYCGRG 1 cut(s) 1449
Bsp1286I GDGCHC 1 cut(s) 1073
Bsp143I GATC 4 cut(s) 751, 1047, 1261, 1464
BspACI CCGC 4 cut(s) 130, 143, 172, 703
BspANI GGCC 2 cut(s) 600, 983
BspCNI CTCAG 4 cut(s) 211, 280, 316, 1021
BspHI TCATGA 1 cut(s) 1153
BspLI GGNNCC 8 cut(s) 7, 351, 512, 678, 952, 1398, 1455, 1466
BspMAI CTGCAG 1 cut(s) 142
BspPI GGATC 3 cut(s) 746, 1459, 1472
BspTI CTTAAG 1 cut(s) 1208
BsrBI CCGCTC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 712
BsrI ACTGG 8 cut(s) 75, 334, 454, 469, 638, 680, 856, 1408
BssECI CCNNGG 8 cut(s) 16, 601, 1129, 1224, 1448, 1449, 1450, 1468
BssMI GATC 4 cut(s) 751, 1047, 1261, 1464
BssNI GRCGYC 1 cut(s) 1476
BssT1I CCWWGG 2 cut(s) 16, 601
Bst2UI CCWGG 5 cut(s) 530, 558, 971, 1226, 1469
Bst4CI ACNGT 5 cut(s) 316, 922, 996, 1130, 1501
BstACI GRCGYC 1 cut(s) 1476
BstAFI CTTAAG 1 cut(s) 1208
BstAPI GCANNNNNTGC 1 cut(s) 1541
BstC8I GCNNGC 2 cut(s) 135, 382
BstDEI CTNAG 4 cut(s) 219, 267, 303, 1029
BstDSI CCRYGG 1 cut(s) 1129
BstF5I GGATG 6 cut(s) 124, 235, 268, 450, 702, 1200
BstKTI GATC 4 cut(s) 754, 1050, 1264, 1467
BstMAI GTCTC 3 cut(s) 54, 207, 1467
BstMBI GATC 4 cut(s) 751, 1047, 1261, 1464
BstMWI GCNNNNNNNGC 5 cut(s) 950, 975, 1204, 1419, 1541
BstNI CCWGG 5 cut(s) 530, 558, 971, 1226, 1469
BstSCI CCNGG 7 cut(s) 528, 556, 969, 1224, 1448, 1449, 1467
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 1073
BstV1I GCAGC 9 cut(s) 77, 124, 152, 345, 562, 722, 725, 1005, 1528
BstV2I GAAGAC 1 cut(s) 1471
BstX2I RGATCY 2 cut(s) 1047, 1464
BstYI RGATCY 2 cut(s) 1047, 1464
BsuRI GGCC 2 cut(s) 600, 983
BtgI CCRYGG 1 cut(s) 1129
BtsCI GGATG 6 cut(s) 124, 235, 268, 450, 702, 1200
BtsIMutI CAGTG 8 cut(s) 82, 312, 327, 645, 687, 927, 1415, 1497
Cac8I GCNNGC 2 cut(s) 135, 382
CaiI CAGNNNCTG 1 cut(s) 890
CciI TCATGA 1 cut(s) 1153
Cfr13I GGNCC 4 cut(s) 511, 911, 1397, 1454
Cfr9I CCCGGG 1 cut(s) 1449
CseI GACGC 1 cut(s) 224
Csp6I GTAC 6 cut(s) 271, 400, 420, 462, 646, 1379
CspCI CAANNNNNGTGG 2 cut(s) 903, 938
CviAII CATG 8 cut(s) 392, 652, 820, 875, 1154, 1164, 1318, 1483
CviQI GTAC 6 cut(s) 271, 400, 420, 462, 646, 1379
DdeI CTNAG 4 cut(s) 219, 267, 303, 1029
DpnI GATC 4 cut(s) 753, 1049, 1263, 1466
DpnII GATC 4 cut(s) 751, 1047, 1261, 1464
DraIII CACNNNGTG 1 cut(s) 77
Eco130I CCWWGG 2 cut(s) 16, 601
Eco147I AGGCCT 1 cut(s) 600
Eco47I GGWCC 4 cut(s) 511, 911, 1397, 1454
Eco88I CYCGRG 1 cut(s) 1449
EcoO109I RGGNCCY 2 cut(s) 511, 1454
EcoRII CCWGG 5 cut(s) 528, 556, 969, 1224, 1467
EcoT14I CCWWGG 2 cut(s) 16, 601
ErhI CCWWGG 2 cut(s) 16, 601
Esp3I CGTCTC 2 cut(s) 207, 1467
FaeI CATG 8 cut(s) 395, 655, 823, 878, 1157, 1167, 1321, 1486
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 4 cut(s) 524, 620, 1096, 1467
FatI CATG 8 cut(s) 391, 651, 819, 874, 1153, 1163, 1317, 1482
FauI CCCGC 1 cut(s) 165
FauNDI CATATG 1 cut(s) 781
FbaI TGATCA 1 cut(s) 1261
FokI GGATG 6 cut(s) 131, 242, 275, 437, 709, 1207
FspBI CTAG 2 cut(s) 549, 1428
GsuI CTGGAG 2 cut(s) 486, 1164
HaeIII GGCC 2 cut(s) 600, 983
HapII CCGG 1 cut(s) 1450
HgaI GACGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 1476
Hin1II CATG 8 cut(s) 395, 655, 823, 878, 1157, 1167, 1321, 1486
HincII GTYRAC 1 cut(s) 1297
HindII GTYRAC 1 cut(s) 1297
HinfI GANTC 3 cut(s) 887, 1084, 1216
HpaII CCGG 1 cut(s) 1450
HphI GGTGA 7 cut(s) 121, 290, 740, 836, 851, 1327, 1354
Hpy166II GTNNAC 5 cut(s) 312, 731, 1071, 1297, 1400
Hpy188I TCNGA 1 cut(s) 1221
Hpy188III TCNNGA 7 cut(s) 520, 611, 891, 1143, 1154, 1192, 1462
Hpy8I GTNNAC 5 cut(s) 312, 731, 1071, 1297, 1400
Hpy99I CGWCG 2 cut(s) 358, 521
HpyAV CCTTC 3 cut(s) 210, 716, 1342
HpyCH4III ACNGT 5 cut(s) 316, 922, 996, 1130, 1501
HpyCH4IV ACGT 2 cut(s) 1306, 1476
HpyF10VI GCNNNNNNNGC 5 cut(s) 950, 975, 1204, 1419, 1541
HpyF3I CTNAG 4 cut(s) 219, 267, 303, 1029
HpySE526I ACGT 2 cut(s) 1306, 1476
Hsp92I GRCGYC 1 cut(s) 1476
Hsp92II CATG 8 cut(s) 395, 655, 823, 878, 1157, 1167, 1321, 1486
Ksp22I TGATCA 1 cut(s) 1261
Kzo9I GATC 4 cut(s) 751, 1047, 1261, 1464
LmnI GCTCC 4 cut(s) 467, 950, 1015, 1058
Lsp1109I GCAGC 9 cut(s) 77, 124, 152, 345, 562, 722, 725, 1005, 1528
LweI GCATC 4 cut(s) 109, 253, 1147, 1185
MaeI CTAG 2 cut(s) 549, 1428
MaeII ACGT 2 cut(s) 1306, 1476
MaeIII GTNAC 2 cut(s) 790, 925
MalI GATC 4 cut(s) 753, 1049, 1263, 1466
MbiI CCGCTC 1 cut(s) 130
MboI GATC 4 cut(s) 751, 1047, 1261, 1464
MboII GAAGA 6 cut(s) 442, 1057, 1131, 1142, 1305, 1471
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 2 cut(s) 1047, 1464
MhlI GDGCHC 1 cut(s) 1073
MluCI AATT 4 cut(s) 245, 533, 879, 1059
MlyI GAGTC 1 cut(s) 1078
MmeI TCCRAC 4 cut(s) 96, 604, 938, 1507
MroXI GAANNNNTTC 1 cut(s) 1138
MseI TTAA 5 cut(s) 248, 501, 657, 1209, 1248
MslI CAYNNNNRTG 2 cut(s) 780, 1430
MspA1I CMGCKG 1 cut(s) 143
MspCI CTTAAG 1 cut(s) 1208
MspI CCGG 1 cut(s) 1450
MspR9I CCNGG 7 cut(s) 530, 558, 971, 1226, 1450, 1451, 1469
MunI CAATTG 1 cut(s) 879
Mva1269I GAATGC 1 cut(s) 980
MvaI CCWGG 5 cut(s) 530, 558, 971, 1226, 1469
MwoI GCNNNNNNNGC 5 cut(s) 950, 975, 1204, 1419, 1541
NciI CCSGG 2 cut(s) 1450, 1451
NdeI CATATG 1 cut(s) 781
NdeII GATC 4 cut(s) 751, 1047, 1261, 1464
NlaIII CATG 8 cut(s) 395, 655, 823, 878, 1157, 1167, 1321, 1486
NlaIV GGNNCC 8 cut(s) 7, 351, 512, 678, 952, 1398, 1455, 1466
PagI TCATGA 1 cut(s) 1153
PceI AGGCCT 1 cut(s) 600
PctI GAATGC 1 cut(s) 980
PdmI GAANNNNTTC 1 cut(s) 1138
PfeI GAWTC 2 cut(s) 887, 1216
PflFI GACNNNGTC 1 cut(s) 515
PleI GAGTC 1 cut(s) 1078
PpsI GAGTC 1 cut(s) 1078
PpuMI RGGWCCY 2 cut(s) 511, 1454
Psp5II RGGWCCY 2 cut(s) 511, 1454
Psp6I CCWGG 5 cut(s) 528, 556, 969, 1224, 1467
PspGI CCWGG 5 cut(s) 528, 556, 969, 1224, 1467
PspN4I GGNNCC 8 cut(s) 7, 351, 512, 678, 952, 1398, 1455, 1466
PspPI GGNCC 4 cut(s) 511, 911, 1397, 1454
PspPPI RGGWCCY 2 cut(s) 511, 1454
PstI CTGCAG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 890
PsuI RGATCY 2 cut(s) 1047, 1464
PsyI GACNNNGTC 1 cut(s) 515
RsaI GTAC 6 cut(s) 272, 401, 421, 463, 647, 1380
RsaNI GTAC 6 cut(s) 271, 400, 420, 462, 646, 1379
RseI CAYNNNNRTG 2 cut(s) 780, 1430
SaqAI TTAA 5 cut(s) 248, 501, 657, 1209, 1248
Sau3AI GATC 4 cut(s) 751, 1047, 1261, 1464
Sau96I GGNCC 4 cut(s) 511, 911, 1397, 1454
ScaI AGTACT 1 cut(s) 272
SchI GAGTC 1 cut(s) 1078
ScrFI CCNGG 7 cut(s) 530, 558, 971, 1226, 1450, 1451, 1469
SduI GDGCHC 1 cut(s) 1073
SfaNI GCATC 4 cut(s) 109, 253, 1147, 1185
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 4 cut(s) 511, 911, 1397, 1454
SmaI CCCGGG 1 cut(s) 1451
SmiMI CAYNNNNRTG 2 cut(s) 780, 1430
SmlI CTYRAG 2 cut(s) 1208, 1382
SmoI CTYRAG 2 cut(s) 1208, 1382
SpeI ACTAGT 2 cut(s) 548, 1427
Sse9I AATT 4 cut(s) 245, 533, 879, 1059
SseBI AGGCCT 1 cut(s) 600
SsiI CCGC 4 cut(s) 130, 143, 172, 703
SspMI CTAG 2 cut(s) 549, 1428
StuI AGGCCT 1 cut(s) 600
StyD4I CCNGG 7 cut(s) 528, 556, 969, 1224, 1448, 1449, 1467
StyI CCWWGG 2 cut(s) 16, 601
TaaI ACNGT 5 cut(s) 316, 922, 996, 1130, 1501
TaiI ACGT 2 cut(s) 1309, 1479
TaqI TCGA 6 cut(s) 35, 179, 324, 356, 416, 816
TasI AATT 4 cut(s) 245, 533, 879, 1059
TatI WGTACW 4 cut(s) 270, 399, 419, 1378
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 2 cut(s) 887, 1216
Tru1I TTAA 5 cut(s) 248, 501, 657, 1209, 1248
Tru9I TTAA 5 cut(s) 248, 501, 657, 1209, 1248
TscAI CASTG 8 cut(s) 82, 319, 334, 645, 687, 927, 1415, 1504
TseI GCWGC 9 cut(s) 65, 137, 140, 333, 575, 710, 713, 1018, 1541
TspDTI ATGAA 4 cut(s) 713, 1142, 1152, 1471
TspGWI ACGGA 1 cut(s) 342
TspMI CCCGGG 1 cut(s) 1449
TspRI CASTG 8 cut(s) 82, 319, 334, 645, 687, 927, 1415, 1504
Tth111I GACNNNGTC 1 cut(s) 515
Vha464I CTTAAG 1 cut(s) 1208
VneI GTGCAC 1 cut(s) 1069
VpaK11BI GGWCC 4 cut(s) 511, 911, 1397, 1454
XapI RAATTY 1 cut(s) 533
XcmI CCANNNNNNNNNTGG 2 cut(s) 461, 1415
XmaI CCCGGG 1 cut(s) 1449
XmnI GAANNNNTTC 1 cut(s) 1138
XspI CTAG 2 cut(s) 549, 1428
ZraI GACGTC 1 cut(s) 1477
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.