FvH4_3g05240

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011877
Physical Location & Seq
Reverse (-)
3036514 .. 3042392
5879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05240.t5

Sequence Viewer

Length: 1011 bp
ATGGCGAGCAGCAGGAGAGCTTTGCAGAGCGTGTTGGGATTCAACAGAGTGATCCGGACGGGAAGGAGGAGCTTCGGTGCTGTCCCTCAAGGCAGTGCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCAGACCCTCATCAACTCTGAATATGAACACAGTGCCCACAATTACCACCCAATTCCAATTGTATTCTCTCAAGCTAAGGGATCATGCATATGGGATCCTGAGGGAAACAGATATCTGGACTTTCTTGCAGCTTACTCTGCTGTTAATCAGGGTCATTGTCATCCAAAGATCATGAAGGCATTACAAGAACAGGCAGAAAGGCTCACTCTTAGTTCTCGAGCTTTCTATAATGATAAATTTCCAGTATTTGCCGAGTATCTAACAAGCATGTTTGGTTATGACATGGTGCTGCCTATGAACACTGGTGCGGAAGCTGTAGAAACAGCTTTAAAGTTGGCCAGGAAATGGGGTTATGAGAAGAAAAAAATTCCAAAAGATGAGGCTATTATCGTCTCGTGTTGTGGCTGCTTCCATGGTCGTACATTGGCTGTCATTTCTATGAGCTGTGACAATGACGCAACCCGAGGTTTTTGGCCGTTAGTGCCAGGACATCTGAAAGTTGATTTTGGTGATGTAGTTGGCCTTGAAAAGATCTTTAAAGAGAATGGAGATCGTATTGCTGGATTTCTTTTTGAACCCATTCAAGGAGAGGCTGGGGTTATAATTCCTCCTGATGGTTATTTGAAATCTGTCAGAGATCTATGCACAAAATATAACATTCTGATGATTGATGATGAAATACAATCTGGTTTAGCACGGTCAGGGAGAATGTTGGCTTGTGATTGGGAACAAGTTCGCCCAGATGTCGTGATTCTAGGAAAAGCATTGGGTGGTGGTGTGATACCTGTAAGTGCGGTGCTCGCAGACAAAGACGTTATGCTCTGTATCCAACCTGGAGAGCATGGAAGGTGTATTTGTATTTTGCAGTACCTTTGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0003674 GO:0003824 GO:0004587 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006536 GO:0006560 GO:0006561 GO:0006591 GO:0006593 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006972 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009084 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009628 GO:0009651 GO:0009814 GO:0009816 GO:0009987 GO:0012501 GO:0016053 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019544 GO:0019752 GO:0019842 GO:0030170 GO:0031974 GO:0033554 GO:0034050 GO:0036094 GO:0042538 GO:0042742 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046394 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051640 GO:0051641 GO:0051646 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070279 GO:0071704 GO:0097159 GO:0098542 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00330 ko01100 ko01110 ko01130 map00330 map01100 map01110 map01130
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

337

Amino Acids

37.04

Weight (kDa)

7.05

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 2 - 346 3.6e-102 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011877)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46180
fragaria_vesca FvH4_3g05240 FvH4_3g05240 FvH4_3g05240 FvH4_3g05240
malus_domestica MD05G1281300.v1.1 MD10G1260100.v1.1
prunus_persica Prupe.4G083300_v2.0.a1 Prupe.4G083300_v2.0.a1
pyrus_communis pycom10g21610
rosa_chinensis RchiOBHm_Chr5g0014471
rosa_laevigata RLG00000032113
rosa_multiflora Rmu_sc0004194.1_g000003
rosa_roxburghii Rroxscaffold_1G00062100
rosa_rugosa Rorug05G0018400
rosa_samantha Rh5AG113500 Rh5CG122000 Rh5DG109300
rosa_wichuraiana Rw5G009850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 731
AccB7I CCANNNNNTGG 1 cut(s) 474
AccIII TCCGGA 1 cut(s) 54
AciI CCGC 2 cut(s) 437, 923
AclWI GGATC 4 cut(s) 46, 217, 218, 231
AcoI YGGCCR 2 cut(s) 465, 602
AcsI RAATTY 2 cut(s) 365, 495
AfaI GTAC 2 cut(s) 550, 998
AfiI CCNNNNNNNGG 3 cut(s) 474, 713, 743
AgsI TTSAA 5 cut(s) 43, 656, 704, 713, 754
AjnI CCWGG 3 cut(s) 467, 613, 961
AluBI AGCT 8 cut(s) 20, 72, 203, 260, 350, 443, 455, 573
AluI AGCT 8 cut(s) 20, 72, 203, 260, 350, 443, 455, 573
Alw21I GWGCWC 1 cut(s) 930
Alw26I GTCTC 1 cut(s) 526
AlwI GGATC 4 cut(s) 46, 217, 218, 231
Ama87I CYCGRG 2 cut(s) 345, 591
Aor13HI TCCGGA 1 cut(s) 54
AoxI GGCC 3 cut(s) 465, 602, 649
ApeKI GCWGC 4 cut(s) 9, 257, 418, 534
ApoI RAATTY 2 cut(s) 365, 495
Asp700I GAANNNNTTC 2 cut(s) 708, 861
AsuHPI GGTGA 1 cut(s) 650
AvaI CYCGRG 2 cut(s) 345, 591
AxyI CCTNAGG 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 166
BalI TGGCCA 1 cut(s) 467
BamHI GGATCC 1 cut(s) 223
BauI CACGAG 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 930
BbvI GCAGC 4 cut(s) 21, 269, 405, 521
BccI CCATC 1 cut(s) 737
BceAI ACGGC 1 cut(s) 589
BciT130I CCWGG 3 cut(s) 469, 615, 963
BciVI GTATCC 1 cut(s) 965
BcoDI GTCTC 1 cut(s) 526
BfaI CTAG 1 cut(s) 884
BfmI CTRYAG 1 cut(s) 444
BfuI GTATCC 1 cut(s) 965
BglII AGATCT 2 cut(s) 660, 766
BisI GCNGC 4 cut(s) 10, 258, 419, 535
BlsI GCNGC 4 cut(s) 11, 259, 420, 536
Bme1390I CCNGG 3 cut(s) 469, 615, 963
BmeT110I CYCGRG 2 cut(s) 345, 591
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 3 cut(s) 469, 615, 963
BpmI CTGGAG 1 cut(s) 984
Bpu10I CCTNAGC 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 72, 183
BsaJI CCNNGG 2 cut(s) 541, 592
BsaWI WCCGGW 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 3 cut(s) 474, 713, 743
Bse1I ACTGG 2 cut(s) 371, 436
Bse21I CCTNAGG 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 54
BseBI CCWGG 3 cut(s) 469, 615, 963
BseDI CCNNGG 2 cut(s) 541, 592
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 3 cut(s) 474, 713, 743
BseMII CTCAG 2 cut(s) 143, 219
BseNI ACTGG 2 cut(s) 371, 436
BseRI GAGGAG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 4 cut(s) 21, 269, 405, 521
BseYI CCCAGC 1 cut(s) 722
BshFI GGCC 3 cut(s) 467, 604, 651
BsiHKAI GWGCWC 1 cut(s) 930
BsiHKCI CYCGRG 2 cut(s) 345, 591
BsiSI CCGG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 474, 713, 743
BsmAI GTCTC 1 cut(s) 526
BsmBI CGTCTC 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 3 cut(s) 467, 604, 651
BsoBI CYCGRG 2 cut(s) 345, 591
Bsp1286I GDGCHC 2 cut(s) 166, 930
Bsp13I TCCGGA 1 cut(s) 54
Bsp143I GATC 7 cut(s) 51, 209, 223, 297, 660, 679, 766
Bsp19I CCATGG 1 cut(s) 541
BspACI CCGC 2 cut(s) 437, 923
BspANI GGCC 3 cut(s) 467, 604, 651
BspCNI CTCAG 2 cut(s) 142, 220
BspEI TCCGGA 1 cut(s) 54
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 4 cut(s) 46, 217, 218, 231
BsrI ACTGG 2 cut(s) 371, 436
BssECI CCNNGG 2 cut(s) 541, 592
BssMI GATC 7 cut(s) 51, 209, 223, 297, 660, 679, 766
BssSI CACGAG 1 cut(s) 523
BssT1I CCWWGG 1 cut(s) 541
Bst2BI CACGAG 1 cut(s) 523
Bst2UI CCWGG 3 cut(s) 469, 615, 963
Bst4CI ACNGT 2 cut(s) 161, 828
Bst6I CTCTTC 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 7, 930
BstDEI CTNAG 4 cut(s) 129, 204, 228, 338
BstDSI CCRYGG 1 cut(s) 541
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 7 cut(s) 54, 212, 226, 300, 663, 682, 769
BstMAI GTCTC 1 cut(s) 526
BstMBI GATC 7 cut(s) 51, 209, 223, 297, 660, 679, 766
BstMWI GCNNNNNNNGC 3 cut(s) 266, 610, 929
BstNI CCWGG 3 cut(s) 469, 615, 963
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 3 cut(s) 467, 613, 961
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 4 cut(s) 21, 269, 405, 521
BstX2I RGATCY 3 cut(s) 223, 660, 766
BstYI RGATCY 3 cut(s) 223, 660, 766
Bsu36I CCTNAGG 1 cut(s) 228
BsuI GTATCC 1 cut(s) 965
BsuRI GGCC 3 cut(s) 467, 604, 651
BtgI CCRYGG 1 cut(s) 541
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 3 cut(s) 100, 166, 429
Cac8I GCNNGC 2 cut(s) 7, 930
CciI TCATGA 1 cut(s) 300
CseI GACGC 1 cut(s) 593
Csp6I GTAC 2 cut(s) 549, 997
CviAII CATG 6 cut(s) 213, 301, 397, 412, 542, 971
CviQI GTAC 2 cut(s) 549, 997
DdeI CTNAG 4 cut(s) 129, 204, 228, 338
DpnI GATC 7 cut(s) 53, 211, 225, 299, 662, 681, 768
DpnII GATC 7 cut(s) 51, 209, 223, 297, 660, 679, 766
DraI TTTAAA 2 cut(s) 459, 667
EaeI YGGCCR 2 cut(s) 465, 602
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 541
Eco32I GATATC 1 cut(s) 242
Eco81I CCTNAGG 1 cut(s) 228
Eco88I CYCGRG 2 cut(s) 345, 591
EcoRII CCWGG 3 cut(s) 467, 613, 961
EcoRV GATATC 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 541
EcoT22I ATGCAT 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 541
Esp3I CGTCTC 1 cut(s) 526
FaeI CATG 6 cut(s) 216, 304, 400, 415, 545, 974
FaqI GGGAC 1 cut(s) 68
FatI CATG 6 cut(s) 212, 300, 396, 411, 541, 970
FauNDI CATATG 1 cut(s) 218
Fnu4HI GCNGC 4 cut(s) 10, 258, 419, 535
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 4 cut(s) 10, 258, 419, 535
FspBI CTAG 1 cut(s) 884
GluI GCNGC 4 cut(s) 10, 258, 419, 535
GsaI CCCAGC 1 cut(s) 726
GsuI CTGGAG 1 cut(s) 984
HaeIII GGCC 3 cut(s) 467, 604, 651
HapII CCGG 1 cut(s) 55
HgaI GACGC 1 cut(s) 593
Hin1II CATG 6 cut(s) 216, 304, 400, 415, 545, 974
HinfI GANTC 2 cut(s) 39, 880
HpaII CCGG 1 cut(s) 55
HphI GGTGA 1 cut(s) 650
Hpy188I TCNGA 5 cut(s) 132, 148, 624, 764, 792
Hpy188III TCNNGA 7 cut(s) 55, 227, 245, 301, 345, 740, 877
HpyAV CCTTC 3 cut(s) 57, 298, 969
HpyCH4III ACNGT 2 cut(s) 161, 828
HpyCH4IV ACGT 1 cut(s) 942
HpyCH4V TGCA 5 cut(s) 25, 216, 257, 774, 994
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 610, 929
HpyF3I CTNAG 4 cut(s) 129, 204, 228, 338
HpySE526I ACGT 1 cut(s) 942
Hsp92II CATG 6 cut(s) 216, 304, 400, 415, 545, 974
Kpn2I TCCGGA 1 cut(s) 54
Kzo9I GATC 7 cut(s) 51, 209, 223, 297, 660, 679, 766
LmnI GCTCC 1 cut(s) 69
Lsp1109I GCAGC 4 cut(s) 21, 269, 405, 521
MaeI CTAG 1 cut(s) 884
MaeII ACGT 1 cut(s) 942
MaeIII GTNAC 1 cut(s) 575
MalI GATC 7 cut(s) 53, 211, 225, 299, 662, 681, 768
MboI GATC 7 cut(s) 51, 209, 223, 297, 660, 679, 766
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 3 cut(s) 223, 660, 766
MhlI GDGCHC 2 cut(s) 166, 930
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 6 cut(s) 169, 180, 186, 365, 495, 732
MluNI TGGCCA 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 982
MnlI CCTC 9 cut(s) 60, 96, 109, 146, 223, 502, 587, 712, 747
Mox20I TGGCCA 1 cut(s) 467
Mph1103I ATGCAT 1 cut(s) 218
MroI TCCGGA 1 cut(s) 54
MroXI GAANNNNTTC 2 cut(s) 708, 861
MscI TGGCCA 1 cut(s) 467
MseI TTAA 3 cut(s) 273, 458, 666
MslI CAYNNNNRTG 3 cut(s) 217, 566, 791
Msp20I TGGCCA 1 cut(s) 467
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 3 cut(s) 469, 615, 963
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 3 cut(s) 469, 615, 963
MwoI GCNNNNNNNGC 3 cut(s) 266, 610, 929
NcoI CCATGG 1 cut(s) 541
NdeI CATATG 1 cut(s) 218
NdeII GATC 7 cut(s) 51, 209, 223, 297, 660, 679, 766
NlaIII CATG 6 cut(s) 216, 304, 400, 415, 545, 974
NlaIV GGNNCC 1 cut(s) 225
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 575
NsiI ATGCAT 1 cut(s) 218
NspI RCATGY 1 cut(s) 400
PaeR7I CTCGAG 1 cut(s) 345
PagI TCATGA 1 cut(s) 300
PdmI GAANNNNTTC 2 cut(s) 708, 861
PfeI GAWTC 2 cut(s) 39, 880
PflMI CCANNNNNTGG 1 cut(s) 474
PkrI GCNGC 4 cut(s) 11, 259, 420, 536
PsiI TTATAA 1 cut(s) 731
Psp6I CCWGG 3 cut(s) 467, 613, 961
PspFI CCCAGC 1 cut(s) 722
PspGI CCWGG 3 cut(s) 467, 613, 961
PspN4I GGNNCC 1 cut(s) 225
PsuI RGATCY 3 cut(s) 223, 660, 766
RsaI GTAC 2 cut(s) 550, 998
RsaNI GTAC 2 cut(s) 549, 997
RseI CAYNNNNRTG 3 cut(s) 217, 566, 791
SaqAI TTAA 3 cut(s) 273, 458, 666
SatI GCNGC 4 cut(s) 10, 258, 419, 535
Sau3AI GATC 7 cut(s) 51, 209, 223, 297, 660, 679, 766
ScrFI CCNGG 3 cut(s) 469, 615, 963
SduI GDGCHC 2 cut(s) 166, 930
SfcI CTRYAG 1 cut(s) 444
Sfr274I CTCGAG 1 cut(s) 345
SlaI CTCGAG 1 cut(s) 345
SmiMI CAYNNNNRTG 3 cut(s) 217, 566, 791
SmlI CTYRAG 3 cut(s) 87, 198, 345
SmoI CTYRAG 3 cut(s) 87, 198, 345
Sse9I AATT 6 cut(s) 169, 180, 186, 365, 495, 732
SsiI CCGC 2 cut(s) 437, 923
SspMI CTAG 1 cut(s) 884
StyD4I CCNGG 3 cut(s) 467, 613, 961
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 2 cut(s) 161, 828
TaiI ACGT 1 cut(s) 945
TaqI TCGA 1 cut(s) 346
TasI AATT 6 cut(s) 169, 180, 186, 365, 495, 732
TfiI GAWTC 2 cut(s) 39, 880
Tru1I TTAA 3 cut(s) 273, 458, 666
Tru9I TTAA 3 cut(s) 273, 458, 666
TscAI CASTG 3 cut(s) 100, 166, 436
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 4 cut(s) 9, 257, 418, 534
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 4 cut(s) 168, 317, 440, 819
TspRI CASTG 3 cut(s) 100, 166, 436
Van91I CCANNNNNTGG 1 cut(s) 474
XapI RAATTY 2 cut(s) 365, 495
XceI RCATGY 1 cut(s) 400
XhoI CTCGAG 1 cut(s) 345
XmnI GAANNNNTTC 2 cut(s) 708, 861
XspI CTAG 1 cut(s) 884
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.