pycom10g21610

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011877
Physical Location & Seq
Reverse (-)
24198046 .. 24202152
4107 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g21610.7

Sequence Viewer

Length: 1437 bp
ATGGCGAGCAGGAGATGTTTGCAGCGTGCTCTGAGCACATTGAGCTTGAAGAAGAGAGTGATTAGGAGGAGCTTCGCTGCTGTCCCTCAAGCCAGCTCCCCTTCATCTTCGCAGGAGCTCATCAACTCTGAATATCAATACAGCGCCCACAATTACCACCCAATTCCCATTGTGTTTTCTCAAGCAAAAGGATCATGTATACAGGATCCAGAGGGAAACAGATATCTGGACTTTCTTTCAGCTTACTCAGCTGTTAATCAGGGACATTGCCATCCAAAAATCATCAAGGCATTACAAGAACAGGCAGAAAGGCTCACCCTTAGTTCTCGGGCTTTCTATAATGATAGATTTCCAAGATTTGCCGAGTATCTAACAAGCATGTTTGGCTATGACATGGTGCTGCCTATGAACACTGGTGCTGAAGCTGTGGAAACAGCTTTAAAGGTGGCAAGGAAATGGGGTCATGAGAAGAAAAAAATTCCAAAAGATGAGGCTATTATTGTCTCATGTTGTGGCTGCTTCCATGGTCGTACTTTGGCAGTCATCTCCATGAGCTGTGACAATGAAGCAACCCGTGGCTTTGGACCCTTGTTGCCTGGACATCTTAAAGTTGATTTTGGTGATGCAATTGGCCTTGAAAAAGTTTTTAAAGAGAATGGAGGCCGCACAGCTGGATTTCTCTTTGAACCCATTCAAGGAGAGGCTGGGGTTATAATTCCTCCAGATGGTTATTTGAAAACTGTTAGAGATCTATGCTCAAAATATAATGTTTTAATGATTGCTGATGAAATACAATCTGGTTTAGCACGGTCAGGAAAAATGCTTGCTGTTGATTGGGAAGAAGTTCGCCCGGATGTAGTGATACTAGGAAAAGCATTGGGTGGTGGAGTGATACCTGTAAGTGCGGTGCTTGCAGACAAAGACGTAATGCTTTGTATCCGACCGGGAGAGCATGGAAGCACCTTTGGGGGTAATCCGTTGGCTAGTGCAGTTGCTGTTGCCTCACTAGATGTAATCAGACATGAGAGACTTGCTGAAAGATCAGCTGAAATGGGACAAGAGCTTAGGAATCAGCTAGTCAAGATTCAGCAGCAATTCCCAAACTACATAAAGGAGGTTCGAGGAAGAGGTTTGTTCAACGCTGTGGAGCTCAATAGCAAGAATTTATCCCCTGTTTCTGCTTACGATATCTGCCTAAAGTTGAAGGAGAGAGGAGTTCTTGCCAAGCCAACACACGATACTATTATCCGATTGACTCCTCCACTCTCGATAAGTTTGGAGGAAGTCCAAGAAGGATCAAAAGCACTTTCAGATGTTCTGGAACATGATCTACCAAAGATGCAGAAGGAAAAACCCGAGAACACATCTTCGACTGCTTCTAACATATGCGACCGTTGTGGGCGAAACTTGTATGATTCTACGCACAACGATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0003674 GO:0003824 GO:0004587 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006536 GO:0006560 GO:0006561 GO:0006591 GO:0006593 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006972 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009084 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009628 GO:0009651 GO:0009814 GO:0009816 GO:0009987 GO:0012501 GO:0016053 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019544 GO:0019752 GO:0019842 GO:0030170 GO:0031974 GO:0033554 GO:0034050 GO:0036094 GO:0042538 GO:0042742 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046394 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051640 GO:0051641 GO:0051646 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070279 GO:0071704 GO:0097159 GO:0098542 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00330 ko01100 ko01110 ko01130 map00330 map01100 map01110 map01130
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

479

Amino Acids

52.61

Weight (kDa)

8.17

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011877)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46180
fragaria_vesca FvH4_3g05240 FvH4_3g05240 FvH4_3g05240 FvH4_3g05240
malus_domestica MD05G1281300.v1.1 MD10G1260100.v1.1
prunus_persica Prupe.4G083300_v2.0.a1 Prupe.4G083300_v2.0.a1
pyrus_communis pycom10g21610
rosa_chinensis RchiOBHm_Chr5g0014471
rosa_laevigata RLG00000032113
rosa_multiflora Rmu_sc0004194.1_g000003
rosa_roxburghii Rroxscaffold_1G00062100
rosa_rugosa Rorug05G0018400
rosa_samantha Rh5AG113500 Rh5CG122000 Rh5DG109300
rosa_wichuraiana Rw5G009850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 713
AccI GTMKAC 1 cut(s) 199
AciI CCGC 2 cut(s) 664, 905
AclWI GGATC 4 cut(s) 199, 200, 213, 1303
AcsI RAATTY 2 cut(s) 477, 1162
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 2 cut(s) 695, 725
AgsI TTSAA 7 cut(s) 49, 638, 686, 695, 736, 1138, 1204
AjnI CCWGG 1 cut(s) 595
Alw21I GWGCWC 4 cut(s) 31, 38, 120, 1152
Alw26I GTCTC 2 cut(s) 508, 1021
AlwI GGATC 4 cut(s) 199, 200, 213, 1303
AlwNI CAGNNNCTG 1 cut(s) 995
Ama87I CYCGRG 2 cut(s) 327, 1355
AoxI GGCC 2 cut(s) 631, 661
ApeKI GCWGC 5 cut(s) 22, 77, 400, 516, 1090
ApoI RAATTY 2 cut(s) 477, 1162
Asp700I GAANNNNTTC 2 cut(s) 690, 843
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 584
AsuC2I CCSGG 2 cut(s) 851, 945
AsuHPI GGTGA 2 cut(s) 307, 632
AvaI CYCGRG 2 cut(s) 327, 1355
AvaII GGWCC 1 cut(s) 584
BamHI GGATCC 1 cut(s) 205
BanII GRGCYC 2 cut(s) 120, 1152
Bbv12I GWGCWC 4 cut(s) 31, 38, 120, 1152
BbvI GCAGC 5 cut(s) 34, 64, 387, 503, 1102
BccI CCATC 2 cut(s) 279, 719
BciT130I CCWGG 1 cut(s) 597
BciVI GTATCC 1 cut(s) 947
BcnI CCSGG 2 cut(s) 851, 945
BcoDI GTCTC 2 cut(s) 508, 1021
BfaI CTAG 4 cut(s) 866, 984, 1007, 1076
BfoI RGCGCY 1 cut(s) 147
BfuI GTATCC 1 cut(s) 947
BglII AGATCT 1 cut(s) 748
BisI GCNGC 6 cut(s) 23, 78, 401, 517, 664, 1091
BlsI GCNGC 6 cut(s) 24, 79, 402, 518, 665, 1092
Bme1390I CCNGG 3 cut(s) 597, 851, 945
Bme18I GGWCC 1 cut(s) 584
BmeT110I CYCGRG 2 cut(s) 327, 1355
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 2 cut(s) 207, 586
BmrFI CCNGG 3 cut(s) 597, 851, 945
BmsI GCATC 2 cut(s) 613, 1329
BpmI CTGGAG 1 cut(s) 705
Bpu10I CCTNAGC 1 cut(s) 1064
BpuEI CTTGAG 2 cut(s) 72, 165
BpuMI CCSGG 2 cut(s) 851, 945
BsaJI CCNNGG 2 cut(s) 523, 574
Bsc4I CCNNNNNNNGG 2 cut(s) 695, 725
Bse1I ACTGG 1 cut(s) 418
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 597
BseDI CCNNGG 2 cut(s) 523, 574
BseGI GGATG 2 cut(s) 271, 859
BseLI CCNNNNNNNGG 2 cut(s) 695, 725
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 23, 261
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 3 cut(s) 82, 1227, 1248
BseXI GCAGC 5 cut(s) 34, 64, 387, 503, 1102
BseYI CCCAGC 1 cut(s) 704
BsgI GTGCAG 1 cut(s) 1008
Bsh1285I CGRYCG 2 cut(s) 944, 1393
BshFI GGCC 2 cut(s) 633, 663
BsiEI CGRYCG 2 cut(s) 944, 1393
BsiHKAI GWGCWC 4 cut(s) 31, 38, 120, 1152
BsiHKCI CYCGRG 2 cut(s) 327, 1355
BsiSI CCGG 2 cut(s) 851, 944
BslFI GGGAC 3 cut(s) 68, 276, 1068
BslI CCNNNNNNNGG 2 cut(s) 695, 725
BsmAI GTCTC 2 cut(s) 508, 1021
BsmFI GGGAC 3 cut(s) 68, 276, 1068
BsnI GGCC 2 cut(s) 633, 663
BsoBI CYCGRG 2 cut(s) 327, 1355
Bsp1286I GDGCHC 4 cut(s) 31, 38, 120, 1152
Bsp143I GATC 7 cut(s) 191, 205, 748, 1040, 1295, 1327, 1429
Bsp19I CCATGG 1 cut(s) 523
BspACI CCGC 2 cut(s) 664, 905
BspANI GGCC 2 cut(s) 633, 663
BspCNI CTCAG 2 cut(s) 24, 260
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 207, 586
BspPI GGATC 4 cut(s) 199, 200, 213, 1303
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 1 cut(s) 418
BssECI CCNNGG 2 cut(s) 523, 574
BssMI GATC 7 cut(s) 191, 205, 748, 1040, 1295, 1327, 1429
BssNAI GTATAC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 523
Bst1107I GTATAC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 3 cut(s) 742, 810, 1394
Bst6I CTCTTC 2 cut(s) 47, 1120
BstC8I GCNNGC 5 cut(s) 7, 27, 94, 825, 912
BstDEI CTNAG 4 cut(s) 32, 247, 320, 1064
BstDSI CCRYGG 2 cut(s) 523, 574
BstF5I GGATG 2 cut(s) 271, 859
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 7 cut(s) 194, 208, 751, 1043, 1298, 1330, 1432
BstMAI GTCTC 2 cut(s) 508, 1021
BstMBI GATC 7 cut(s) 191, 205, 748, 1040, 1295, 1327, 1429
BstMCI CGRYCG 2 cut(s) 944, 1393
BstMWI GCNNNNNNNGC 4 cut(s) 42, 248, 384, 911
BstNI CCWGG 1 cut(s) 597
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 3 cut(s) 595, 849, 943
BstV1I GCAGC 5 cut(s) 34, 64, 387, 503, 1102
BstX2I RGATCY 2 cut(s) 205, 748
BstYI RGATCY 2 cut(s) 205, 748
BstZ17I GTATAC 1 cut(s) 200
BsuI GTATCC 1 cut(s) 947
BsuRI GGCC 2 cut(s) 633, 663
BtgI CCRYGG 2 cut(s) 523, 574
BtsCI GGATG 2 cut(s) 271, 859
BtsIMutI CAGTG 2 cut(s) 411, 1432
Cac8I GCNNGC 5 cut(s) 7, 27, 94, 825, 912
CaiI CAGNNNCTG 1 cut(s) 995
CciI TCATGA 1 cut(s) 463
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 531
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 4 cut(s) 32, 247, 320, 1064
DpnI GATC 7 cut(s) 193, 207, 750, 1042, 1297, 1329, 1431
DpnII GATC 7 cut(s) 191, 205, 748, 1040, 1295, 1327, 1429
DraI TTTAAA 2 cut(s) 441, 649
Eam1104I CTCTTC 2 cut(s) 47, 1120
EarI CTCTTC 2 cut(s) 47, 1120
Ecl136II GAGCTC 2 cut(s) 118, 1150
Eco130I CCWWGG 1 cut(s) 523
Eco24I GRGCYC 2 cut(s) 120, 1152
Eco32I GATATC 2 cut(s) 224, 1189
Eco47I GGWCC 1 cut(s) 584
Eco53kI GAGCTC 2 cut(s) 118, 1150
Eco57I CTGAAG 1 cut(s) 441
Eco88I CYCGRG 2 cut(s) 327, 1355
EcoICRI GAGCTC 2 cut(s) 118, 1150
EcoRII CCWGG 1 cut(s) 595
EcoRV GATATC 2 cut(s) 224, 1189
EcoT14I CCWWGG 1 cut(s) 523
EcoT38I GRGCYC 2 cut(s) 120, 1152
ErhI CCWWGG 1 cut(s) 523
FaqI GGGAC 3 cut(s) 68, 276, 1068
FauNDI CATATG 1 cut(s) 1385
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 6 cut(s) 23, 78, 401, 517, 664, 1091
FokI GGATG 2 cut(s) 258, 866
FriOI GRGCYC 2 cut(s) 120, 1152
Fsp4HI GCNGC 6 cut(s) 23, 78, 401, 517, 664, 1091
FspBI CTAG 4 cut(s) 866, 984, 1007, 1076
GlaI GCGC 1 cut(s) 145
GluI GCNGC 6 cut(s) 23, 78, 401, 517, 664, 1091
GsaI CCCAGC 1 cut(s) 708
GsuI CTGGAG 1 cut(s) 705
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 2 cut(s) 633, 663
HapII CCGG 2 cut(s) 851, 944
HhaI GCGC 1 cut(s) 146
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 4 cut(s) 1069, 1084, 1255, 1415
HpaII CCGG 2 cut(s) 851, 944
HphI GGTGA 2 cut(s) 307, 632
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 6 cut(s) 33, 130, 941, 1019, 1250, 1312
Hpy188III TCNNGA 8 cut(s) 209, 227, 464, 722, 813, 1081, 1267, 1319
Hpy8I GTNNAC 1 cut(s) 200
HpyAV CCTTC 4 cut(s) 111, 1198, 1286, 1339
HpyCH4III ACNGT 3 cut(s) 742, 810, 1394
HpyCH4IV ACGT 1 cut(s) 924
HpyCH4V TGCA 5 cut(s) 22, 626, 914, 989, 1342
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 248, 384, 911
HpyF3I CTNAG 4 cut(s) 32, 247, 320, 1064
HpySE526I ACGT 1 cut(s) 924
HspAI GCGC 1 cut(s) 144
Kzo9I GATC 7 cut(s) 191, 205, 748, 1040, 1295, 1327, 1429
LmnI GCTCC 4 cut(s) 69, 101, 115, 1147
Lsp1109I GCAGC 5 cut(s) 34, 64, 387, 503, 1102
LweI GCATC 2 cut(s) 613, 1329
MaeI CTAG 4 cut(s) 866, 984, 1007, 1076
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 1 cut(s) 557
MalI GATC 7 cut(s) 193, 207, 750, 1042, 1297, 1329, 1431
MboI GATC 7 cut(s) 191, 205, 748, 1040, 1295, 1327, 1429
MboII GAAGA 7 cut(s) 61, 64, 99, 481, 851, 1137, 1359
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 2 cut(s) 205, 748
MhlI GDGCHC 4 cut(s) 31, 38, 120, 1152
MluCI AATT 7 cut(s) 151, 162, 477, 627, 714, 1094, 1162
MlyI GAGTC 1 cut(s) 1249
MmeI TCCRAC 1 cut(s) 964
MroXI GAANNNNTTC 2 cut(s) 690, 843
MseI TTAA 5 cut(s) 255, 440, 606, 648, 773
MslI CAYNNNNRTG 1 cut(s) 548
MspA1I CMGCKG 3 cut(s) 251, 671, 1046
MspI CCGG 2 cut(s) 851, 944
MspR9I CCNGG 3 cut(s) 597, 851, 945
MunI CAATTG 1 cut(s) 627
MvaI CCWGG 1 cut(s) 597
MwoI GCNNNNNNNGC 4 cut(s) 42, 248, 384, 911
NciI CCSGG 2 cut(s) 851, 945
NcoI CCATGG 1 cut(s) 523
NdeI CATATG 1 cut(s) 1385
NdeII GATC 7 cut(s) 191, 205, 748, 1040, 1295, 1327, 1429
NlaIV GGNNCC 2 cut(s) 207, 586
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 557
NspI RCATGY 1 cut(s) 382
PagI TCATGA 1 cut(s) 463
PdmI GAANNNNTTC 2 cut(s) 690, 843
PfeI GAWTC 3 cut(s) 1069, 1084, 1415
PkrI GCNGC 6 cut(s) 24, 79, 402, 518, 665, 1092
PleI GAGTC 1 cut(s) 1249
PpsI GAGTC 1 cut(s) 1249
PsiI TTATAA 1 cut(s) 713
Psp124BI GAGCTC 2 cut(s) 120, 1152
Psp6I CCWGG 1 cut(s) 595
PspFI CCCAGC 1 cut(s) 704
PspGI CCWGG 1 cut(s) 595
PspN4I GGNNCC 2 cut(s) 207, 586
PspPI GGNCC 1 cut(s) 584
PsrI GAACNNNNNNTAC 2 cut(s) 1314, 1346
PstNI CAGNNNCTG 1 cut(s) 995
PsuI RGATCY 2 cut(s) 205, 748
PvuII CAGCTG 3 cut(s) 251, 671, 1046
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 1 cut(s) 548
SacI GAGCTC 2 cut(s) 120, 1152
SaqAI TTAA 5 cut(s) 255, 440, 606, 648, 773
SatI GCNGC 6 cut(s) 23, 78, 401, 517, 664, 1091
Sau3AI GATC 7 cut(s) 191, 205, 748, 1040, 1295, 1327, 1429
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 1 cut(s) 1249
ScrFI CCNGG 3 cut(s) 597, 851, 945
SduI GDGCHC 4 cut(s) 31, 38, 120, 1152
SfaNI GCATC 2 cut(s) 613, 1329
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 2 cut(s) 87, 180
SmoI CTYRAG 2 cut(s) 87, 180
Sse9I AATT 7 cut(s) 151, 162, 477, 627, 714, 1094, 1162
SsiI CCGC 2 cut(s) 664, 905
SspMI CTAG 4 cut(s) 866, 984, 1007, 1076
SstI GAGCTC 2 cut(s) 120, 1152
StyD4I CCNGG 3 cut(s) 595, 849, 943
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 3 cut(s) 742, 810, 1394
TaiI ACGT 1 cut(s) 927
TaqI TCGA 3 cut(s) 1120, 1268, 1370
TasI AATT 7 cut(s) 151, 162, 477, 627, 714, 1094, 1162
TauI GCSGC 1 cut(s) 666
TfiI GAWTC 3 cut(s) 1069, 1084, 1415
Tru1I TTAA 5 cut(s) 255, 440, 606, 648, 773
Tru9I TTAA 5 cut(s) 255, 440, 606, 648, 773
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 5 cut(s) 22, 77, 400, 516, 1090
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 4 cut(s) 93, 422, 579, 801
TspGWI ACGGA 1 cut(s) 966
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 2 cut(s) 477, 1162
XceI RCATGY 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 199
XmnI GAANNNNTTC 2 cut(s) 690, 843
XspI CTAG 4 cut(s) 866, 984, 1007, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.