Rorug05G0018400
TCP Family

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005089
Physical Location & Seq
Forward (+)
1239671 .. 1243108
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0018400.1

Sequence Viewer

Length: 711 bp
ATGAGTATCTGGATGATCTGCAAAGAGGTGTACCATAAGGCTCCTGGTATGCTTTTTGTTTCAGGGTTCCTGAAGAAAATTATTCACCACTTTCTTGGACTGCTCCGAGTGTTTCGAGGAGAACAAGATACAGCCGCCAGCGCAAGTGGTCAGCACCAGAAGCAGGCTCAGCCGGCGAAGCTTCATGATCCTCGACCGGGAGAACTCGAGGAGATTCTCATCGCTACTGGTAGCAAGGTAGAAGAACGAGACCCTTCTGATGACAGGCATTGTAGGATTTGCGATACAAGTGGTGATCATAGTACTGAAACGTGCCCCGAAAGATCCAAGGCATATGTAGTGCTTTGTGGGATTTGTGATGATGGCCCATGCCAAAATGAGGCTGACCACAAGGAAGAACATTACGAAGAACTCCTTTTTTGTTATATTTGTAACAAGACCATCTATACACTGCATTGGATCATCAAGGAATCACAACTTTCAGGGATGATCCTGAACTTCACAAAGGGGCCGGAAGCTATTTCTCCAGCACTTTTTGCTGCAATTGAAGAATCAAGATTTGCTCTCATTGTTCTCTCACAAAATTATGCATCGTCAACATGGTGCTTGGATGAATTTGGAGTTTTGGAGAAGCCTTTGCTAAAAGTGCGAAGGTGGAGATGTGCTTTAACTGAAGTGGCAACTTTCTCTGGGTGGAATTCAAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0003674 GO:0003824 GO:0004587 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006536 GO:0006560 GO:0006561 GO:0006591 GO:0006593 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006972 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009084 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009628 GO:0009651 GO:0009814 GO:0009816 GO:0009987 GO:0012501 GO:0016053 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019544 GO:0019752 GO:0019842 GO:0030170 GO:0031974 GO:0033554 GO:0034050 GO:0036094 GO:0042538 GO:0042742 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046394 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051640 GO:0051641 GO:0051646 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070279 GO:0071704 GO:0097159 GO:0098542 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00330 ko01100 ko01110 ko01130 map00330 map01100 map01110 map01130
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

236

Amino Acids

26.72

Weight (kDa)

5.82

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 172 - 206 6.3e-10 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AclWI GGATC 4 cut(s) 182, 318, 467, 484
AcsI RAATTY 2 cut(s) 614, 697
AcuI CTGAAG 2 cut(s) 92, 693
AfaI GTAC 2 cut(s) 32, 304
AfiI CCNNNNNNNGG 3 cut(s) 163, 197, 379
AgsI TTSAA 2 cut(s) 548, 702
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 2 cut(s) 181, 518
AluI AGCT 2 cut(s) 181, 518
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 4 cut(s) 182, 318, 467, 484
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 2 cut(s) 364, 509
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 2 cut(s) 614, 697
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 365, 509
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 77, 305
AvaI CYCGRG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 526
BccI CCATC 2 cut(s) 356, 449
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 243
BisI GCNGC 2 cut(s) 135, 540
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 2 cut(s) 136, 541
BmcAI AGTACT 1 cut(s) 304
Bme1390I CCNGG 2 cut(s) 45, 198
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 2 cut(s) 365, 509
BmiI GGNNCC 3 cut(s) 42, 68, 510
BmrFI CCNGG 2 cut(s) 45, 198
BmsI GCATC 1 cut(s) 599
BpmI CTGGAG 1 cut(s) 510
Bpu1102I GCTNAGC 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 327
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 197, 379
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 218
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 3 cut(s) 18, 492, 616
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 3 cut(s) 163, 197, 379
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 132, 224
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 1 cut(s) 526
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 2 cut(s) 366, 511
BsiEI CGRYCG 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 3 cut(s) 173, 197, 512
BslI CCNNNNNNNGG 3 cut(s) 163, 197, 379
BsmAI GTCTC 1 cut(s) 243
BsnI GGCC 2 cut(s) 366, 511
Bso31I GGTCTC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 6 cut(s) 15, 187, 295, 323, 459, 489
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 1 cut(s) 135
BspANI GGCC 2 cut(s) 366, 511
BspCNI CTCAG 1 cut(s) 181
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 42, 68, 510
BspPI GGATC 4 cut(s) 182, 318, 467, 484
BspTNI GGTCTC 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 6 cut(s) 15, 187, 295, 323, 459, 489
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 536
BstC8I GCNNGC 3 cut(s) 139, 165, 174
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 3 cut(s) 18, 492, 616
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 6 cut(s) 18, 190, 298, 326, 462, 492
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 6 cut(s) 15, 187, 295, 323, 459, 489
BstMCI CGRYCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 7 cut(s) 140, 160, 169, 173, 178, 536, 646
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 2 cut(s) 43, 196
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 1 cut(s) 526
BstX2I RGATCY 1 cut(s) 323
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 323
BsuRI GGCC 2 cut(s) 366, 511
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 3 cut(s) 18, 492, 616
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 3 cut(s) 139, 165, 174
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 365, 509
Csp6I GTAC 2 cut(s) 31, 303
CviAII CATG 3 cut(s) 185, 369, 600
CviQI GTAC 2 cut(s) 31, 303
DdeI CTNAG 1 cut(s) 168
DpnI GATC 6 cut(s) 17, 189, 297, 325, 461, 491
DpnII GATC 6 cut(s) 15, 187, 295, 323, 459, 489
Eco130I CCWWGG 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 92, 693
Eco88I CYCGRG 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 592
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 3 cut(s) 188, 372, 603
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 3 cut(s) 184, 368, 599
FauNDI CATATG 1 cut(s) 334
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 135, 540
FokI GGATG 3 cut(s) 25, 499, 623
Fsp4HI GCNGC 2 cut(s) 135, 540
GlaI GCGC 1 cut(s) 142
GluI GCNGC 2 cut(s) 135, 540
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 2 cut(s) 366, 511
HapII CCGG 3 cut(s) 173, 197, 512
HhaI GCGC 1 cut(s) 143
Hin1II CATG 3 cut(s) 188, 372, 603
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 3 cut(s) 214, 470, 551
HpaII CCGG 3 cut(s) 173, 197, 512
HphI GGTGA 2 cut(s) 77, 305
Hpy166II GTNNAC 2 cut(s) 31, 597
Hpy188I TCNGA 2 cut(s) 107, 259
Hpy188III TCNNGA 5 cut(s) 10, 70, 185, 493, 555
Hpy8I GTNNAC 2 cut(s) 31, 597
HpyAV CCTTC 2 cut(s) 264, 645
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 4 cut(s) 21, 454, 542, 590
HpyF10VI GCNNNNNNNGC 7 cut(s) 140, 160, 169, 173, 178, 536, 646
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 3 cut(s) 188, 372, 603
HspAI GCGC 1 cut(s) 141
KroI GCCGGC 1 cut(s) 172
KroNI GCCGGC 1 cut(s) 174
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 6 cut(s) 15, 187, 295, 323, 459, 489
LmnI GCTCC 2 cut(s) 46, 108
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 1 cut(s) 599
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 431
MalI GATC 6 cut(s) 17, 189, 297, 325, 461, 491
MboI GATC 6 cut(s) 15, 187, 295, 323, 459, 489
MboII GAAGA 5 cut(s) 85, 254, 407, 419, 560
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 5 cut(s) 78, 543, 583, 614, 697
MnlI CCTC 5 cut(s) 19, 110, 201, 202, 373
Mph1103I ATGCAT 1 cut(s) 592
MroNI GCCGGC 1 cut(s) 172
MseI TTAA 1 cut(s) 668
MspI CCGG 3 cut(s) 173, 197, 512
MspR9I CCNGG 2 cut(s) 45, 198
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 7 cut(s) 140, 160, 169, 173, 178, 536, 646
NaeI GCCGGC 1 cut(s) 174
NciI CCSGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 334
NdeII GATC 6 cut(s) 15, 187, 295, 323, 459, 489
NgoMIV GCCGGC 1 cut(s) 172
NlaIII CATG 3 cut(s) 188, 372, 603
NlaIV GGNNCC 3 cut(s) 42, 68, 510
NsiI ATGCAT 1 cut(s) 592
PaeR7I CTCGAG 1 cut(s) 206
PagI TCATGA 1 cut(s) 184
PdiI GCCGGC 1 cut(s) 174
PfeI GAWTC 3 cut(s) 214, 470, 551
PkrI GCNGC 2 cut(s) 136, 541
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 3 cut(s) 42, 68, 510
PspPI GGNCC 2 cut(s) 365, 509
PspXI VCTCGAGB 1 cut(s) 206
PsuI RGATCY 1 cut(s) 323
RsaI GTAC 2 cut(s) 32, 304
RsaNI GTAC 2 cut(s) 31, 303
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 2 cut(s) 135, 540
Sau3AI GATC 6 cut(s) 15, 187, 295, 323, 459, 489
Sau96I GGNCC 2 cut(s) 365, 509
ScaI AGTACT 1 cut(s) 304
ScrFI CCNGG 2 cut(s) 45, 198
SduI GDGCHC 1 cut(s) 317
SetI ASST 6 cut(s) 30, 183, 240, 314, 520, 656
SfaNI GCATC 1 cut(s) 599
Sfr274I CTCGAG 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 5 cut(s) 78, 543, 583, 614, 697
SsiI CCGC 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 43, 196
StyI CCWWGG 1 cut(s) 327
TaiI ACGT 1 cut(s) 314
TaqI TCGA 3 cut(s) 115, 193, 207
TasI AATT 5 cut(s) 78, 543, 583, 614, 697
TatI WGTACW 1 cut(s) 302
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 3 cut(s) 214, 470, 551
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TscAI CASTG 1 cut(s) 456
TseI GCWGC 1 cut(s) 539
TspDTI ATGAA 2 cut(s) 173, 627
TspRI CASTG 1 cut(s) 456
XapI RAATTY 2 cut(s) 614, 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XhoI CTCGAG 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 304
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.