Rw5G009870
TCP Family

Transcription factor TCP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0005089
Physical Location & Seq
Reverse (-)
10666316 .. 10673104
6789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009870.1

Sequence Viewer

Length: 1323 bp
ATGGAGGTGGAGGAGATTCAAGCTCAGCAGCCCTGCAAGTTCCCAAGAACTGGAAATGGCGGTAGAGGAAGCACTATAGTCAAGAGCCCAGATGAGGAAGACGGCGGCGGCGGTCGGGAGCTCAAGAGAGCTGGCGGGGGAGACGCGGGCACTAACCGGCTCAACGGGTGGCACCACTCTCGAATCATCAGGGTTTCGAGAGCCTCCGGAGGGAAAGATCGGCACAGCAAGGTGTGGACTTCAAAGGGGTTGAGGGACAGGAGGGTCCGGCTGTCGGTTACAACCGCTATTCAATTCTACGATCTTCAAGATCGGCTGGGTTATGACCAACCCAGTAAGGCAGTGGAGTGGCTGATCAAAGCTGCGGCTGACGCCATCTCGGAGCTTCCTTCTCTGAACAGCTCGTTCCCCGACACTCCGAAGCAGCTGAGCGATGAGAAGAGGGCGAGCAGCGAGCGCGGGTTCGATTCCGTTGAGCTTGATGTAGATGGTGACCCCAATTATCACCATCAAGTGCAGAATCATCATCAGCTTTGCATGTCGAAATCTGCTTGCAGTAGTACTTCTGAGACGAGCAAGGGATCGGGGGGCCTGTCTCTGTCCCGGTCGGAGATGCGGGTGAACCGGGATAAGGCCAGGGAGCGAGCCCGGGAGAGAGCAGCCAAGGAGAAGGAGAAAGACAGCAACAGCAACAACGACGAGTCCTCCCGCATTGCACAGGCTATTTCTCAAAGTGCATCGTTTACTGAGCTTCTCACCGGCGGAATCGGAAACAACAGGAACAACAACAGTCCCAACGGCGAGCCCATTTTGTTCCACAAGGCAGCAGCACCGCCGATGGAATACTTCGGGTCCAGTCTTCTGGGACTTTCCTCCACCCCAACCCGAAACCACCATCAATTCCACCTGGGGAATTCGCTCCCCCAGACAATGTTCAGCATCTCCGGTGACCACAACCACAGCCACCCGGAGATGCAGCATTTCTCGTTTGTTCCCGACTACATCCCTGTCGTCTCGGCAGCGGCCAACGGCGGCGAATACAACCTCAACTTCTCCATGTCTTCTTCCGGCGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCATCATCATCACCATCACCTTCTCTTTTGCCTCACCTCCAGAGGTTCTCTCCCATGGACGGATCGTCCAGTGTACCTTTCTTCATCGGAGCTGCCGCCGCAGCCGCAGCTCCAACCATGGAGAATCACCAGCACCACCAGTTCCCAGCTGGATTGCAGCTCTACGGCGACGGAAGCCGGCATTCAGACCACAAGGGAAAAGCAAAGAACTGA

Protein Analysis

440

Amino Acids

47.66

Weight (kDa)

8.35

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 70 - 225 9.4e-44 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 263, 1102
AccB1I GGYRCC 1 cut(s) 171
AccB7I CCANNNNNTGG 1 cut(s) 50
AccII CGCG 2 cut(s) 146, 459
AccIII TCCGGA 1 cut(s) 206
AclWI GGATC 2 cut(s) 589, 1180
AcoI YGGCCR 1 cut(s) 1023
AcsI RAATTY 1 cut(s) 913
AcuI CTGAAG 1 cut(s) 1085
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 2 cut(s) 562, 1185
AfiI CCNNNNNNNGG 6 cut(s) 50, 94, 210, 274, 631, 1169
AgsI TTSAA 5 cut(s) 20, 243, 293, 308, 1087
AhdI GACNNNNNGTC 1 cut(s) 1174
AjnI CCWGG 2 cut(s) 635, 906
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 4 cut(s) 135, 563, 600, 1018
AlwI GGATC 2 cut(s) 589, 1180
Ama87I CYCGRG 1 cut(s) 648
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 4 cut(s) 589, 633, 1023, 1072
ApoI RAATTY 1 cut(s) 913
AspLEI GCGC 1 cut(s) 459
AspS9I GGNCC 4 cut(s) 265, 589, 852, 1095
AsuC2I CCSGG 5 cut(s) 604, 626, 649, 650, 968
AsuHPI GGTGA 9 cut(s) 497, 503, 631, 748, 959, 1113, 1119, 1136, 1229
AvaI CYCGRG 1 cut(s) 648
AvaII GGWCC 3 cut(s) 265, 852, 1095
BaeGI GKGCMC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 171
BanII GRGCYC 4 cut(s) 89, 123, 649, 807
BbsI GAAGAC 3 cut(s) 105, 851, 1053
Bbv12I GWGCWC 1 cut(s) 123
BccI CCATC 6 cut(s) 383, 482, 516, 832, 903, 1132
BceAI ACGGC 4 cut(s) 118, 814, 1045, 1291
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 2 cut(s) 637, 908
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 5 cut(s) 604, 626, 649, 650, 968
BcoDI GTCTC 4 cut(s) 135, 563, 600, 1018
BfmI CTRYAG 1 cut(s) 75
BlpI GCTNAGC 2 cut(s) 24, 428
BmcAI AGTACT 1 cut(s) 562
Bme1390I CCNGG 7 cut(s) 604, 626, 637, 649, 650, 908, 968
Bme18I GGWCC 3 cut(s) 265, 852, 1095
BmeRI GACNNNNNGTC 1 cut(s) 1174
BmeT110I CYCGRG 1 cut(s) 648
BmgT120I GGNCC 4 cut(s) 265, 589, 852, 1095
BmiI GGNNCC 6 cut(s) 173, 266, 590, 853, 1096, 1097
BmrFI CCNGG 7 cut(s) 604, 626, 637, 649, 650, 908, 968
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 4 cut(s) 603, 746, 948, 963
BmuI ACTGGG 1 cut(s) 327
BpiI GAAGAC 3 cut(s) 105, 851, 1053
BplI GAGNNNNNCTC 2 cut(s) 1144, 1176
BpmI CTGGAG 1 cut(s) 1133
Bpu1102I GCTNAGC 2 cut(s) 24, 428
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 5 cut(s) 604, 626, 649, 650, 968
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 6 cut(s) 636, 648, 663, 907, 1164, 1227
BsaWI WCCGGW 2 cut(s) 206, 944
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 94, 210, 274, 631, 1169
Bse118I RCCGGY 3 cut(s) 156, 758, 1287
Bse1I ACTGG 5 cut(s) 55, 333, 855, 1179, 1249
Bse3DI GCAATG 1 cut(s) 711
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 2 cut(s) 637, 908
BseDI CCNNGG 6 cut(s) 636, 648, 663, 907, 1164, 1227
BseGI GGATG 1 cut(s) 1002
BseLI CCNNNNNNNGG 6 cut(s) 50, 94, 210, 274, 631, 1169
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 4 cut(s) 38, 419, 558, 738
BseNI ACTGG 5 cut(s) 55, 333, 855, 1179, 1249
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 152
BseYI CCCAGC 2 cut(s) 316, 1255
BsgI GTGCAG 1 cut(s) 536
Bsh1236I CGCG 2 cut(s) 146, 459
Bsh1285I CGRYCG 2 cut(s) 115, 608
BshFI GGCC 4 cut(s) 591, 635, 1025, 1074
BshNI GGYRCC 1 cut(s) 171
BsiEI CGRYCG 2 cut(s) 115, 608
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 648
BslFI GGGAC 5 cut(s) 269, 586, 777, 879, 1108
BslI CCNNNNNNNGG 6 cut(s) 50, 94, 210, 274, 631, 1169
BsmAI GTCTC 4 cut(s) 135, 563, 600, 1018
BsmBI CGTCTC 3 cut(s) 135, 563, 1018
BsmFI GGGAC 5 cut(s) 269, 586, 777, 879, 1108
BsmI GAATGC 1 cut(s) 1291
BsnI GGCC 4 cut(s) 591, 635, 1025, 1074
BsoBI CYCGRG 1 cut(s) 648
Bsp1286I GDGCHC 5 cut(s) 89, 123, 152, 649, 807
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 6 cut(s) 217, 301, 310, 354, 581, 1172
Bsp1720I GCTNAGC 2 cut(s) 24, 428
Bsp19I CCATGG 2 cut(s) 1164, 1227
BspANI GGCC 4 cut(s) 591, 635, 1025, 1074
BspCNI CTCAG 4 cut(s) 37, 420, 559, 739
BspEI TCCGGA 1 cut(s) 206
BspFNI CGCG 2 cut(s) 146, 459
BspLI GGNNCC 6 cut(s) 173, 266, 590, 853, 1096, 1097
BspPI GGATC 2 cut(s) 589, 1180
BspT107I GGYRCC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 3 cut(s) 156, 758, 1287
BsrI ACTGG 5 cut(s) 55, 333, 855, 1179, 1249
BssAI RCCGGY 3 cut(s) 156, 758, 1287
BssECI CCNNGG 6 cut(s) 636, 648, 663, 907, 1164, 1227
BssMI GATC 6 cut(s) 217, 301, 310, 354, 581, 1172
BssNI GRCGYC 1 cut(s) 372
BssT1I CCWWGG 3 cut(s) 663, 1164, 1227
Bst2UI CCWGG 2 cut(s) 637, 908
Bst4CI ACNGT 1 cut(s) 791
Bst6I CTCTTC 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 8 cut(s) 133, 148, 448, 455, 553, 645, 803, 1289
BstDEI CTNAG 4 cut(s) 24, 428, 567, 747
BstDSI CCRYGG 2 cut(s) 1164, 1227
BstEII GGTNACC 2 cut(s) 491, 947
BstF5I GGATG 1 cut(s) 1002
BstFNI CGCG 2 cut(s) 146, 459
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 6 cut(s) 220, 304, 313, 357, 584, 1175
BstMAI GTCTC 4 cut(s) 135, 563, 600, 1018
BstMBI GATC 6 cut(s) 217, 301, 310, 354, 581, 1172
BstMCI CGRYCG 2 cut(s) 115, 608
BstMWI GCNNNNNNNGC 7 cut(s) 371, 456, 1208, 1211, 1214, 1217, 1284
BstNI CCWGG 2 cut(s) 637, 908
BstNSI RCATGY 1 cut(s) 541
BstPI GGTNACC 2 cut(s) 491, 947
BstSCI CCNGG 7 cut(s) 602, 624, 635, 647, 648, 906, 966
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 152
BstUI CGCG 2 cut(s) 146, 459
BstV2I GAAGAC 3 cut(s) 105, 851, 1053
BstXI CCANNNNNNTGG 1 cut(s) 862
BsuRI GGCC 4 cut(s) 591, 635, 1025, 1074
BtgI CCRYGG 2 cut(s) 1164, 1227
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 1002
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 2 cut(s) 348, 1186
Cac8I GCNNGC 8 cut(s) 133, 148, 448, 455, 553, 645, 803, 1289
CfoI GCGC 1 cut(s) 459
Cfr10I RCCGGY 3 cut(s) 156, 758, 1287
Cfr13I GGNCC 4 cut(s) 265, 589, 852, 1095
Cfr9I CCCGGG 1 cut(s) 648
CseI GACGC 2 cut(s) 152, 380
Csp6I GTAC 2 cut(s) 561, 1184
CviAII CATG 4 cut(s) 538, 1057, 1165, 1228
CviQI GTAC 2 cut(s) 561, 1184
DdeI CTNAG 4 cut(s) 24, 428, 567, 747
DpnI GATC 6 cut(s) 219, 303, 312, 356, 583, 1174
DpnII GATC 6 cut(s) 217, 301, 310, 354, 581, 1172
DrdI GACNNNNNNGTC 2 cut(s) 263, 1102
DriI GACNNNNNGTC 1 cut(s) 1174
DseDI GACNNNNNNGTC 2 cut(s) 263, 1102
EaeI YGGCCR 1 cut(s) 1023
Eam1104I CTCTTC 1 cut(s) 434
Eam1105I GACNNNNNGTC 1 cut(s) 1174
EarI CTCTTC 1 cut(s) 434
EciI GGCGGA 1 cut(s) 777
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 3 cut(s) 663, 1164, 1227
Eco24I GRGCYC 4 cut(s) 89, 123, 649, 807
Eco47I GGWCC 3 cut(s) 265, 852, 1095
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 1085
Eco88I CYCGRG 1 cut(s) 648
Eco91I GGTNACC 2 cut(s) 491, 947
EcoICRI GAGCTC 1 cut(s) 121
EcoO109I RGGNCCY 2 cut(s) 589, 1095
EcoO65I GGTNACC 2 cut(s) 491, 947
EcoRI GAATTC 1 cut(s) 913
EcoRII CCWGG 2 cut(s) 635, 906
EcoT14I CCWWGG 3 cut(s) 663, 1164, 1227
EcoT38I GRGCYC 4 cut(s) 89, 123, 649, 807
ErhI CCWWGG 3 cut(s) 663, 1164, 1227
Esp3I CGTCTC 3 cut(s) 135, 563, 1018
FaeI CATG 4 cut(s) 541, 1060, 1168, 1231
FaiI YATR 6 cut(s) 77, 324, 539, 1058, 1166, 1229
FaqI GGGAC 5 cut(s) 269, 586, 777, 879, 1108
FatI CATG 4 cut(s) 537, 1056, 1164, 1227
FauI CCCGC 5 cut(s) 128, 139, 452, 609, 716
FbaI TGATCA 1 cut(s) 354
FokI GGATG 1 cut(s) 989
FriOI GRGCYC 4 cut(s) 89, 123, 649, 807
GlaI GCGC 1 cut(s) 458
GsaI CCCAGC 2 cut(s) 320, 1259
GsuI CTGGAG 1 cut(s) 1133
HaeIII GGCC 4 cut(s) 591, 635, 1025, 1074
HgaI GACGC 2 cut(s) 152, 380
HhaI GCGC 1 cut(s) 459
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 4 cut(s) 541, 1060, 1168, 1231
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HinfI GANTC 7 cut(s) 16, 183, 467, 520, 701, 765, 1234
HphI GGTGA 9 cut(s) 497, 503, 631, 748, 959, 1113, 1119, 1136, 1229
Hpy166II GTNNAC 4 cut(s) 237, 622, 744, 1184
Hpy188I TCNGA 8 cut(s) 382, 396, 420, 568, 610, 770, 1199, 1297
Hpy188III TCNNGA 9 cut(s) 82, 116, 124, 180, 198, 207, 308, 995, 1150
Hpy8I GTNNAC 4 cut(s) 237, 622, 744, 1184
Hpy99I CGWCG 2 cut(s) 701, 1283
HpyAV CCTTC 4 cut(s) 399, 664, 1109, 1140
HpyCH4III ACNGT 1 cut(s) 791
HpyCH4V TGCA 8 cut(s) 36, 517, 537, 555, 716, 737, 976, 1267
HpyF10VI GCNNNNNNNGC 7 cut(s) 371, 456, 1208, 1211, 1214, 1217, 1284
HpyF3I CTNAG 4 cut(s) 24, 428, 567, 747
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 4 cut(s) 541, 1060, 1168, 1231
HspAI GCGC 1 cut(s) 457
KflI GGGWCCC 1 cut(s) 1095
Kpn2I TCCGGA 1 cut(s) 206
KroI GCCGGC 1 cut(s) 1287
KroNI GCCGGC 1 cut(s) 1289
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 6 cut(s) 217, 301, 310, 354, 581, 1172
LmnI GCTCC 6 cut(s) 118, 382, 640, 924, 1199, 1225
LweI GCATC 4 cut(s) 603, 746, 948, 963
MaeIII GTNAC 3 cut(s) 277, 491, 947
MalI GATC 6 cut(s) 219, 303, 312, 356, 583, 1174
MboI GATC 6 cut(s) 217, 301, 310, 354, 581, 1172
MboII GAAGA 7 cut(s) 110, 296, 451, 851, 1053, 1056, 1183
MhlI GDGCHC 5 cut(s) 89, 123, 152, 649, 807
MluCI AATT 5 cut(s) 293, 499, 899, 913, 1108
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 2 cut(s) 588, 1247
MroI TCCGGA 1 cut(s) 206
MroNI GCCGGC 1 cut(s) 1287
MspA1I CMGCKG 3 cut(s) 427, 1022, 1259
MspR9I CCNGG 7 cut(s) 604, 626, 637, 649, 650, 908, 968
Mva1269I GAATGC 1 cut(s) 1291
MvaI CCWGG 2 cut(s) 637, 908
MvnI CGCG 2 cut(s) 146, 459
MwoI GCNNNNNNNGC 7 cut(s) 371, 456, 1208, 1211, 1214, 1217, 1284
NaeI GCCGGC 1 cut(s) 1289
NciI CCSGG 5 cut(s) 604, 626, 649, 650, 968
NcoI CCATGG 2 cut(s) 1164, 1227
NdeII GATC 6 cut(s) 217, 301, 310, 354, 581, 1172
NgoMIV GCCGGC 1 cut(s) 1287
NlaIII CATG 4 cut(s) 541, 1060, 1168, 1231
NlaIV GGNNCC 6 cut(s) 173, 266, 590, 853, 1096, 1097
NmeAIII GCCGAG 1 cut(s) 995
NmuCI GTSAC 2 cut(s) 491, 947
NspI RCATGY 1 cut(s) 541
PctI GAATGC 1 cut(s) 1291
PdiI GCCGGC 1 cut(s) 1289
PfeI GAWTC 6 cut(s) 16, 183, 467, 520, 765, 1234
PflMI CCANNNNNTGG 1 cut(s) 50
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PpuMI RGGWCCY 1 cut(s) 1095
Psp124BI GAGCTC 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 1095
Psp6I CCWGG 2 cut(s) 635, 906
PspEI GGTNACC 2 cut(s) 491, 947
PspFI CCCAGC 2 cut(s) 316, 1255
PspGI CCWGG 2 cut(s) 635, 906
PspN4I GGNNCC 6 cut(s) 173, 266, 590, 853, 1096, 1097
PspPI GGNCC 4 cut(s) 265, 589, 852, 1095
PspPPI RGGWCCY 1 cut(s) 1095
PvuII CAGCTG 2 cut(s) 427, 1259
RsaI GTAC 2 cut(s) 562, 1185
RsaNI GTAC 2 cut(s) 561, 1184
SacI GAGCTC 1 cut(s) 123
Sau3AI GATC 6 cut(s) 217, 301, 310, 354, 581, 1172
Sau96I GGNCC 4 cut(s) 265, 589, 852, 1095
ScaI AGTACT 1 cut(s) 562
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 7 cut(s) 604, 626, 637, 649, 650, 908, 968
SduI GDGCHC 5 cut(s) 89, 123, 152, 649, 807
SfaNI GCATC 4 cut(s) 603, 746, 948, 963
SfcI CTRYAG 1 cut(s) 75
SgrAI CRCCGGYG 1 cut(s) 758
SinI GGWCC 3 cut(s) 265, 852, 1095
SmaI CCCGGG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 5 cut(s) 293, 499, 899, 913, 1108
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 7 cut(s) 602, 624, 635, 647, 648, 906, 966
StyI CCWWGG 3 cut(s) 663, 1164, 1227
TaaI ACNGT 1 cut(s) 791
TaqI TCGA 4 cut(s) 181, 197, 465, 542
TasI AATT 5 cut(s) 293, 499, 899, 913, 1108
TatI WGTACW 1 cut(s) 560
TauI GCSGC 9 cut(s) 108, 111, 368, 1025, 1035, 1074, 1208, 1211, 1217
TfiI GAWTC 6 cut(s) 16, 183, 467, 520, 765, 1234
TscAI CASTG 2 cut(s) 348, 1186
TseFI GTSAC 2 cut(s) 491, 947
Tsp45I GTSAC 2 cut(s) 491, 947
TspDTI ATGAA 2 cut(s) 1101, 1183
TspGWI ACGGA 3 cut(s) 460, 1185, 1296
TspMI CCCGGG 1 cut(s) 648
TspRI CASTG 2 cut(s) 348, 1186
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 3 cut(s) 265, 852, 1095
XapI RAATTY 1 cut(s) 913
XceI RCATGY 1 cut(s) 541
XcmI CCANNNNNNNNNTGG 2 cut(s) 340, 1256
XmaI CCCGGG 1 cut(s) 648
ZrmI AGTACT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.