Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005089

Physical Location & Seq

Genomic Coordinates Reverse (-)

10162922 .. 10165583

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGATTGGAGATCTAATGAAGAATAACAACAATGGCGACGTTGTGGATAACGAAGTGAACAACCGGTTAAGCCGGTGGCATCACAATTCTTCCCGGATAATTAGGGTTTCACGAGCTTCCGGTGGTAAAGATCGACACAGCAAAGTCTTGACTTCTAAAGGACCACGTGACCGTCGTGTCCGGTTATCAGTCTCCACCGCTCTTCAATTCTATGATCTTCAAGATCGGTTAGGTTATGATCAACCTAGCAAAGCTGTTGAATGGTTAATCAAAGCTGCTGAAGATTCAATCTCTGAGCTTCCTTCACTCAACAACACTCATTTTCCGACCGATGACGAGAATCACCAGAATCAGACATTAACAACAGTTGCTGCTAATTCCTTGTCTAAATCTGCTTGTAGTAGCAATTCAGACACGAGCAAGAACTCTTCTGGTTTGTCTTTATCAAGATCGGAGCTTAGAGATAAAGCTAGAGAGAGGGCTAGAGAGAGAACAGCTAAAGAGACCAAGGAAAGAGATCATAACCACACTTCGTTTACGGATTTGTTAAATTCCGGTTCAGATCCGGTTAACTCAAACCGGCAATGGATGGCTTCAGCTCCTTCTTCATCTCCAATGGAGTATTTCAGTTCGGGTTTAATTCTCGGGTCGGGTCAACAAACCCATTTCCCTATTTCAACAAATTCTCATCCTTTCTCATCAATCTCCGATCATCATCATCATCATCCTCATCATCAGCATCAAGAGTTTTCATTCGTTCCCGACCATTTGATATCACCGGCAGAATCCAACGGCGGAGCATTCAATCTTGATTTTAATATGTCAACACCCTCCGGCGCCGGAGCTGCCGTCTCCGCCGCATCAGGTGGTGGCTTCAGTGGTTTCAACAGGGGGACCCTTCAGTCCAATTCAACAAATCAGCATCAGTCATTCCTCGCTAATCTACAGAGGTTTCCAACATCAGAAAGTGGAGGAGGTCCACAGTTCTTATTCGGTGCACTGCCTGCAGAGAATCACCACCACAATCACCAGTTTCAGCTTTACTATGAAAATGGATGCAGAAACTCATCAGAACATAAGGGTAAAGGCAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0008285 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010099 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0042127 GO:0045935 GO:0045962 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

365

Amino Acids

40.18

Weight (kDa)

7.44

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	41 - 171	1.6e-36	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30210 AT1G30210 AT4G18390 AT4G18390
fragaria_vesca	FvH4_3g05220 FvH4_3g05220
malus_domestica	MD05G1281100.v1.1 MD10G1259500.v1.1
prunus_persica	Prupe.3G099100_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1
pyrus_communis	pycom05g10530 pycom05g26120 pycom10g21590
rosa_chinensis	RchiOBHm_Chr5g0014491
rosa_laevigata	RLG00000032116
rosa_multiflora	Rmu_sc0000441.1_g000121 Rmu_sc0017039.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062060
rosa_rugosa	Rorug05G0018400 Rorug05G0018500
rosa_samantha	Rh5AG113800 Rh5BG110400 Rh5CG122300 Rh5DG109700
rosa_wichuraiana	Rw5G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	176, 901
AccB1I	GGYRCC	1 cut(s)	836
AccBSI	CCGCTC	1 cut(s)	200
AciI	CCGC	4 cut(s)	198, 795, 855, 858
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	2 cut(s)	550, 682
AcuI	CTGAAG	4 cut(s)	300, 579, 859, 884
AcvI	CACGTG	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	837
AgeI	ACCGGT	1 cut(s)	63
AgsI	TTSAA	8 cut(s)	206, 221, 260, 288, 678, 805, 886, 912
Alw21I	GWGCWC	1 cut(s)	1000
Alw26I	GTCTC	3 cut(s)	196, 497, 856
Alw44I	GTGCAC	1 cut(s)	996
AlwI	GGATC	1 cut(s)	557
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	644
ApaLI	GTGCAC	1 cut(s)	996
ApeKI	GCWGC	3 cut(s)	275, 371, 845
ApoI	RAATTY	2 cut(s)	550, 682
AsiGI	ACCGGT	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	839
AspS9I	GGNCC	3 cut(s)	161, 894, 977
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	4 cut(s)	335, 768, 1007, 1019
AvaI	CYCGRG	1 cut(s)	644
AvaII	GGWCC	3 cut(s)	161, 894, 977
BaeGI	GKGCMC	1 cut(s)	1000
BanI	GGYRCC	1 cut(s)	836
BauI	CACGAG	2 cut(s)	111, 415
BbrPI	CACGTG	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	1000
BbvI	GCAGC	3 cut(s)	262, 358, 832
BccI	CCATC	1 cut(s)	583
BceAI	ACGGC	2 cut(s)	808, 833
BclI	TGATCA	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	3 cut(s)	196, 497, 856
BfaI	CTAG	3 cut(s)	246, 471, 483
BfmI	CTRYAG	2 cut(s)	944, 1005
BfoI	RGCGCY	1 cut(s)	840
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	4 cut(s)	276, 372, 846, 858
BlsI	GCNGC	4 cut(s)	277, 373, 847, 859
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	3 cut(s)	161, 894, 977
BmeT110I	CYCGRG	1 cut(s)	644
BmgT120I	GGNCC	3 cut(s)	161, 894, 977
BmiI	GGNNCC	3 cut(s)	838, 895, 896
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	5 cut(s)	88, 748, 869, 931, 1046
BpuMI	CCSGG	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	714
BsaHI	GRCGYC	1 cut(s)	837
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	5 cut(s)	63, 119, 180, 554, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bse118I	RCCGGY	4 cut(s)	63, 72, 579, 778
Bse1I	ACTGG	1 cut(s)	1030
Bse3DI	GCAATG	1 cut(s)	590
Bse8I	GATNNNNATC	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	4 cut(s)	594, 688, 724, 1061
BseJI	GATNNNNATC	1 cut(s)	714
BseMI	GCAATG	1 cut(s)	590
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	1030
BseRI	GAGGAG	1 cut(s)	987
BseSI	GKGCMC	1 cut(s)	1000
BseXI	GCAGC	3 cut(s)	262, 358, 832
Bsh1285I	CGRYCG	1 cut(s)	330
BshNI	GGYRCC	1 cut(s)	836
BshTI	ACCGGT	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	1000
BsiHKCI	CYCGRG	1 cut(s)	644
BslFI	GGGAC	1 cut(s)	907
BsmAI	GTCTC	3 cut(s)	196, 497, 856
BsmBI	CGTCTC	1 cut(s)	856
BsmFI	GGGAC	1 cut(s)	907
BsmI	GAATGC	1 cut(s)	800
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	1000
Bsp143I	GATC	9 cut(s)	10, 130, 214, 223, 238, 449, 517, 562, 709
BspACI	CCGC	4 cut(s)	198, 795, 855, 858
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	3 cut(s)	838, 895, 896
BspMAI	CTGCAG	1 cut(s)	1009
BspPI	GGATC	1 cut(s)	557
BspQI	GCTCTTC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	836
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	590
BsrFI	RCCGGY	4 cut(s)	63, 72, 579, 778
BsrI	ACTGG	1 cut(s)	1030
BssAI	RCCGGY	4 cut(s)	63, 72, 579, 778
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	9 cut(s)	10, 130, 214, 223, 238, 449, 517, 562, 709
BssNI	GRCGYC	1 cut(s)	837
BssSI	CACGAG	2 cut(s)	111, 415
BssT1I	CCWWGG	1 cut(s)	507
Bst2BI	CACGAG	2 cut(s)	111, 415
Bst4CI	ACNGT	3 cut(s)	173, 367, 984
Bst6I	CTCTTC	2 cut(s)	207, 433
BstACI	GRCGYC	1 cut(s)	837
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	1005
BstDEI	CTNAG	2 cut(s)	294, 458
BstF5I	GGATG	4 cut(s)	594, 688, 724, 1061
BstH2I	RGCGCY	1 cut(s)	840
BstHHI	GCGC	1 cut(s)	839
BstKTI	GATC	9 cut(s)	13, 133, 217, 226, 241, 452, 520, 565, 712
BstMAI	GTCTC	3 cut(s)	196, 497, 856
BstMBI	GATC	9 cut(s)	10, 130, 214, 223, 238, 449, 517, 562, 709
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	3 cut(s)	845, 854, 1004
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	2 cut(s)	944, 1005
BstSLI	GKGCMC	1 cut(s)	1000
BstV1I	GCAGC	3 cut(s)	262, 358, 832
BstX2I	RGATCY	2 cut(s)	10, 562
BstYI	RGATCY	2 cut(s)	10, 562
BtsCI	GGATG	4 cut(s)	594, 688, 724, 1061
BtsI	GCAGTG	1 cut(s)	998
BtsIMutI	CAGTG	2 cut(s)	883, 998
Cac8I	GCNNGC	1 cut(s)	1005
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	839
Cfr10I	RCCGGY	4 cut(s)	63, 72, 579, 778
Cfr13I	GGNCC	3 cut(s)	161, 894, 977
CspAI	ACCGGT	1 cut(s)	63
DdeI	CTNAG	2 cut(s)	294, 458
DinI	GGCGCC	1 cut(s)	838
DpnI	GATC	9 cut(s)	12, 132, 216, 225, 240, 451, 519, 564, 711
DpnII	GATC	9 cut(s)	10, 130, 214, 223, 238, 449, 517, 562, 709
DrdI	GACNNNNNNGTC	2 cut(s)	176, 901
DseDI	GACNNNNNNGTC	2 cut(s)	176, 901
Eam1104I	CTCTTC	2 cut(s)	207, 433
EarI	CTCTTC	2 cut(s)	207, 433
EciI	GGCGGA	2 cut(s)	810, 844
Eco130I	CCWWGG	1 cut(s)	507
Eco31I	GGTCTC	1 cut(s)	497
Eco32I	GATATC	1 cut(s)	774
Eco47I	GGWCC	3 cut(s)	161, 894, 977
Eco57I	CTGAAG	4 cut(s)	300, 579, 859, 884
Eco72I	CACGTG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	644
EcoO109I	RGGNCCY	1 cut(s)	894
EcoRV	GATATC	1 cut(s)	774
EcoT14I	CCWWGG	1 cut(s)	507
EgeI	GGCGCC	1 cut(s)	838
EheI	GGCGCC	1 cut(s)	838
ErhI	CCWWGG	1 cut(s)	507
Esp3I	CGTCTC	1 cut(s)	856
FaiI	YATR	6 cut(s)	213, 237, 522, 821, 1047, 1077
FaqI	GGGAC	1 cut(s)	907
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	4 cut(s)	276, 372, 846, 858
FokI	GGATG	4 cut(s)	601, 675, 711, 1068
Fsp4HI	GCNGC	4 cut(s)	276, 372, 846, 858
FspBI	CTAG	3 cut(s)	246, 471, 483
GlaI	GCGC	1 cut(s)	838
GluI	GCNGC	4 cut(s)	276, 372, 846, 858
HaeII	RGCGCY	1 cut(s)	840
HhaI	GCGC	1 cut(s)	839
Hin1I	GRCGYC	1 cut(s)	837
Hin6I	GCGC	1 cut(s)	837
HinP1I	GCGC	1 cut(s)	837
HincII	GTYRAC	3 cut(s)	571, 656, 825
HindII	GTYRAC	3 cut(s)	571, 656, 825
HinfI	GANTC	5 cut(s)	284, 340, 349, 785, 1012
HpaI	GTTAAC	1 cut(s)	571
HphI	GGTGA	4 cut(s)	335, 768, 1007, 1019
Hpy166II	GTNNAC	7 cut(s)	58, 537, 571, 656, 825, 980, 998
Hpy188I	TCNGA	9 cut(s)	295, 327, 354, 412, 454, 562, 709, 964, 1072
Hpy188III	TCNNGA	7 cut(s)	111, 148, 221, 447, 743, 761, 809
Hpy8I	GTNNAC	7 cut(s)	58, 537, 571, 656, 825, 980, 998
Hpy99I	CGWCG	2 cut(s)	41, 177
HpyAV	CCTTC	3 cut(s)	312, 612, 908
HpyCH4III	ACNGT	3 cut(s)	173, 367, 984
HpyCH4IV	ACGT	2 cut(s)	39, 166
HpyCH4V	TGCA	3 cut(s)	998, 1007, 1059
HpyF10VI	GCNNNNNNNGC	3 cut(s)	845, 854, 1004
HpyF3I	CTNAG	2 cut(s)	294, 458
HpySE526I	ACGT	2 cut(s)	39, 166
Hsp92I	GRCGYC	1 cut(s)	837
HspAI	GCGC	1 cut(s)	837
KasI	GGCGCC	1 cut(s)	836
KflI	GGGWCCC	1 cut(s)	894
Ksp22I	TGATCA	1 cut(s)	238
KspAI	GTTAAC	1 cut(s)	571
Kzo9I	GATC	9 cut(s)	10, 130, 214, 223, 238, 449, 517, 562, 709
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	4 cut(s)	454, 604, 797, 842
Lsp1109I	GCAGC	3 cut(s)	262, 358, 832
LweI	GCATC	5 cut(s)	88, 748, 869, 931, 1046
MaeI	CTAG	3 cut(s)	246, 471, 483
MaeII	ACGT	2 cut(s)	39, 166
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	9 cut(s)	12, 132, 216, 225, 240, 451, 519, 564, 711
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	9 cut(s)	10, 130, 214, 223, 238, 449, 517, 562, 709
MboII	GAAGA	7 cut(s)	31, 81, 194, 209, 293, 420, 597
MflI	RGATCY	2 cut(s)	10, 562
MhlI	GDGCHC	1 cut(s)	1000
MluCI	AATT	9 cut(s)	85, 99, 206, 376, 406, 550, 639, 682, 907
Mly113I	GGCGCC	1 cut(s)	837
MmeI	TCCRAC	3 cut(s)	350, 813, 980
MnlI	CCTC	7 cut(s)	471, 738, 841, 942, 944, 965, 968
MseI	TTAA	7 cut(s)	68, 266, 359, 548, 570, 638, 816
MspR9I	CCNGG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	800
MwoI	GCNNNNNNNGC	3 cut(s)	845, 854, 1004
NarI	GGCGCC	1 cut(s)	837
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	9 cut(s)	10, 130, 214, 223, 238, 449, 517, 562, 709
NlaIV	GGNNCC	3 cut(s)	838, 895, 896
NmuCI	GTSAC	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PctI	GAATGC	1 cut(s)	800
PfeI	GAWTC	5 cut(s)	284, 340, 349, 785, 1012
PfoI	TCCNGGA	1 cut(s)	92
PinAI	ACCGGT	1 cut(s)	63
PkrI	GCNGC	4 cut(s)	277, 373, 847, 859
PluTI	GGCGCC	1 cut(s)	840
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	894
Psp5II	RGGWCCY	1 cut(s)	894
PspCI	CACGTG	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	838, 895, 896
PspPI	GGNCC	3 cut(s)	161, 894, 977
PspPPI	RGGWCCY	1 cut(s)	894
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	10, 562
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	7 cut(s)	68, 266, 359, 548, 570, 638, 816
SatI	GCNGC	4 cut(s)	276, 372, 846, 858
Sau3AI	GATC	9 cut(s)	10, 130, 214, 223, 238, 449, 517, 562, 709
Sau96I	GGNCC	3 cut(s)	161, 894, 977
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	1000
SfaNI	GCATC	5 cut(s)	88, 748, 869, 931, 1046
SfcI	CTRYAG	2 cut(s)	944, 1005
SfoI	GGCGCC	1 cut(s)	838
SinI	GGWCC	3 cut(s)	161, 894, 977
Sse9I	AATT	9 cut(s)	85, 99, 206, 376, 406, 550, 639, 682, 907
SsiI	CCGC	4 cut(s)	198, 795, 855, 858
SspDI	GGCGCC	1 cut(s)	836
SspMI	CTAG	3 cut(s)	246, 471, 483
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	3 cut(s)	173, 367, 984
TaiI	ACGT	2 cut(s)	42, 169
TaqI	TCGA	1 cut(s)	133
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	9 cut(s)	85, 99, 206, 376, 406, 550, 639, 682, 907
TauI	GCSGC	1 cut(s)	860
TfiI	GAWTC	5 cut(s)	284, 340, 349, 785, 1012
Tru1I	TTAA	7 cut(s)	68, 266, 359, 548, 570, 638, 816
Tru9I	TTAA	7 cut(s)	68, 266, 359, 548, 570, 638, 816
TscAI	CASTG	2 cut(s)	883, 1005
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	3 cut(s)	275, 371, 845
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	4 cut(s)	32, 597, 741, 1062
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	2 cut(s)	883, 1005
VneI	GTGCAC	1 cut(s)	996
VpaK11BI	GGWCC	3 cut(s)	161, 894, 977
XapI	RAATTY	2 cut(s)	550, 682
XspI	CTAG	3 cut(s)	246, 471, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.