RchiOBHm_Chr5g0014491
TCP Family

Transcription factor TCP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005089
Physical Location & Seq
Reverse (-)
9966444 .. 9974546
8103 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29494

Sequence Viewer

Length: 1326 bp
ATGGAGGTGGAGGAGATTCAAGCTCAGCAGCCCCGCAAGTTCCCAAGAATTGGAAATGGCGGTAGAGGAAGCACTATAGTCAAGAGCCCAGATGAGGAAGAAGACGGCGGTCGGGAGCTCAAGAGAGCTGGCGGGGGAGACGCGGGCACTAACCGGCTTAACGGGTGGCACCACTCTCGAATCATCAGGGTTTCGAGAGCCTCCGGAGGGAAAGATCGGCACAGCAAGGTGTGGACTTCAAAGGGGTTGAGGGACAGGAGGGTCCGGCTGTCGGTTACAACCGCTATTCAATTCTACGATCTTCAAGATCGGCTGGGTTATGACCAACCCAGTAAGGCAGTGGAGTGGCTGATCAAGGCTGCGGCTGACGCCATCGCGGAGCTTCCTTCTCTGAACAGCTCGTTCCCCGACACTCCGAAGCAGCTCAGCGATGAGAAGAGGGCGAGCAGCGAGCGCGGGTTCGATTCCGTTGAGCTTGATGTAGATGGTGACCCCAATTATCACCATCAAGTGCAGAATCATCATCAGCTTTGTATGTCGAAATCTGCCTGCAGTAGTACTTCTGAGACGAGCAAGGGATCGGGGGGGCTGTCTCTGTCCCGGTCGGAGATGCGGGTGAACCGGGATAAGGCCAGGGAGCGAGCCCGGGAGAGAGCAGCCAAGGAGAAGGAGAAAGACAGCAACAACGACGAGTCCTCCCGCATTGCACAGGCTATTTCTCAAAATGCATCGTTTACTGAGCTTCTCACCGGCGGAATCGGAAACAACAGGAACAACAGTCCCACCGGTCATCAGCAGAACAATCCCAACGGCGAGCCCATTTTGTTCCACAAGGCAGCACCACCGATGGACTACTTCGGGTCGAGTCTTCTGGGACTTTCCTCCACCCCAACCCGAAACCACCATCAATTCTCCGGGCAAATCCACCTGGGGAATTCGCTCCCCCAGACAATGTTCAGCATCTCCGGTGACCACAACCACAGCCACCCGGAGATGCAGCATTTCTCGTTTGTTCCCGACTACATCCCTGTCTCGGCAGCGGCCAACGGCGGCGAATACAACCTCAACTTCTCCATGTCTTCTTCCGGCGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCATCATCGTCACCTTCTCTTTTGCCTCACCTCCAGAGGTTCTCTCCCATGGACGGATCGTCCAGTGTACCTTTCTTCATCGGAGCTGCCGCCGCAGCCGCAGCTCCAACCATGGAGAACCACCAGTTCCCAGCTGGATTGCAGCTCTACGGCGACGGAAGCCGGCATTCAGACCACAAGGGAAAAGCAAAGAACTGA

Protein Analysis

441

Amino Acids

47.92

Weight (kDa)

8.42

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 69 - 224 1.1e-43 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 260, 1120
AccB1I GGYRCC 1 cut(s) 168
AccB7I CCANNNNNTGG 1 cut(s) 50
AccII CGCG 3 cut(s) 143, 377, 456
AccIII TCCGGA 1 cut(s) 203
AclWI GGATC 2 cut(s) 586, 1192
AcoI YGGCCR 1 cut(s) 1041
AcsI RAATTY 1 cut(s) 934
AcuI CTGAAG 1 cut(s) 1103
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 2 cut(s) 559, 1197
AfiI CCNNNNNNNGG 7 cut(s) 50, 94, 207, 271, 628, 1033, 1181
AgeI ACCGGT 1 cut(s) 785
AgsI TTSAA 5 cut(s) 20, 240, 290, 305, 1105
AhdI GACNNNNNGTC 1 cut(s) 1186
AjnI CCWGG 2 cut(s) 632, 927
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 4 cut(s) 132, 560, 597, 1036
AlwI GGATC 2 cut(s) 586, 1192
Ama87I CYCGRG 1 cut(s) 645
Aor13HI TCCGGA 1 cut(s) 203
AoxI GGCC 3 cut(s) 630, 1041, 1090
ApoI RAATTY 1 cut(s) 934
AsiGI ACCGGT 1 cut(s) 785
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 2 cut(s) 262, 1113
AsuC2I CCSGG 6 cut(s) 601, 623, 646, 647, 916, 989
AsuHPI GGTGA 7 cut(s) 494, 500, 628, 739, 980, 1131, 1148
AvaI CYCGRG 1 cut(s) 645
AvaII GGWCC 2 cut(s) 262, 1113
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 4 cut(s) 89, 120, 646, 819
BbsI GAAGAC 3 cut(s) 108, 860, 1071
Bbv12I GWGCWC 1 cut(s) 120
BccI CCATC 5 cut(s) 380, 479, 513, 841, 912
BceAI ACGGC 4 cut(s) 121, 826, 1063, 1294
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 2 cut(s) 634, 929
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 6 cut(s) 601, 623, 646, 647, 916, 989
BcoDI GTCTC 4 cut(s) 132, 560, 597, 1036
BfmI CTRYAG 2 cut(s) 75, 550
BlpI GCTNAGC 2 cut(s) 24, 425
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 8 cut(s) 601, 623, 634, 646, 647, 916, 929, 989
Bme18I GGWCC 2 cut(s) 262, 1113
BmeRI GACNNNNNGTC 1 cut(s) 1186
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 2 cut(s) 262, 1113
BmiI GGNNCC 4 cut(s) 170, 263, 1114, 1115
BmrFI CCNGG 8 cut(s) 601, 623, 634, 646, 647, 916, 929, 989
BmrI ACTGGG 1 cut(s) 324
BmsI GCATC 4 cut(s) 600, 737, 969, 984
BmuI ACTGGG 1 cut(s) 324
BoxI GACNNNNGTC 1 cut(s) 108
BpiI GAAGAC 3 cut(s) 108, 860, 1071
BplI GAGNNNNNCTC 2 cut(s) 1156, 1188
BpmI CTGGAG 1 cut(s) 1145
Bpu1102I GCTNAGC 2 cut(s) 24, 425
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 6 cut(s) 601, 623, 646, 647, 916, 989
BsaHI GRCGYC 1 cut(s) 369
BsaJI CCNNGG 6 cut(s) 633, 645, 660, 928, 1176, 1239
BsaWI WCCGGW 3 cut(s) 203, 785, 965
BsaXI ACNNNNNCTCC 2 cut(s) 680, 710
Bsc4I CCNNNNNNNGG 7 cut(s) 50, 94, 207, 271, 628, 1033, 1181
Bse118I RCCGGY 4 cut(s) 153, 749, 785, 1290
Bse1I ACTGG 3 cut(s) 330, 1191, 1252
Bse3DI GCAATG 1 cut(s) 702
BseAI TCCGGA 1 cut(s) 203
BseBI CCWGG 2 cut(s) 634, 929
BseDI CCNNGG 6 cut(s) 633, 645, 660, 928, 1176, 1239
BseGI GGATG 1 cut(s) 1023
BseLI CCNNNNNNNGG 7 cut(s) 50, 94, 207, 271, 628, 1033, 1181
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 4 cut(s) 38, 439, 555, 729
BseNI ACTGG 3 cut(s) 330, 1191, 1252
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 149
BseYI CCCAGC 2 cut(s) 313, 1258
BsgI GTGCAG 1 cut(s) 533
Bsh1236I CGCG 3 cut(s) 143, 377, 456
Bsh1285I CGRYCG 2 cut(s) 112, 605
BshFI GGCC 3 cut(s) 632, 1043, 1092
BshNI GGYRCC 1 cut(s) 168
BshTI ACCGGT 1 cut(s) 785
BsiEI CGRYCG 2 cut(s) 112, 605
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 645
BslFI GGGAC 5 cut(s) 266, 583, 765, 888, 1126
BslI CCNNNNNNNGG 7 cut(s) 50, 94, 207, 271, 628, 1033, 1181
BsmAI GTCTC 4 cut(s) 132, 560, 597, 1036
BsmBI CGTCTC 2 cut(s) 132, 560
BsmFI GGGAC 5 cut(s) 266, 583, 765, 888, 1126
BsmI GAATGC 1 cut(s) 1294
BsnI GGCC 3 cut(s) 632, 1043, 1092
BsoBI CYCGRG 1 cut(s) 645
Bsp1286I GDGCHC 5 cut(s) 89, 120, 149, 646, 819
Bsp13I TCCGGA 1 cut(s) 203
Bsp143I GATC 6 cut(s) 214, 298, 307, 351, 578, 1184
Bsp1720I GCTNAGC 2 cut(s) 24, 425
Bsp19I CCATGG 2 cut(s) 1176, 1239
BspANI GGCC 3 cut(s) 632, 1043, 1092
BspCNI CTCAG 4 cut(s) 37, 438, 556, 730
BspEI TCCGGA 1 cut(s) 203
BspFNI CGCG 3 cut(s) 143, 377, 456
BspLI GGNNCC 4 cut(s) 170, 263, 1114, 1115
BspMAI CTGCAG 1 cut(s) 554
BspPI GGATC 2 cut(s) 586, 1192
BspT107I GGYRCC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 702
BsrFI RCCGGY 4 cut(s) 153, 749, 785, 1290
BsrI ACTGG 3 cut(s) 330, 1191, 1252
BssAI RCCGGY 4 cut(s) 153, 749, 785, 1290
BssECI CCNNGG 6 cut(s) 633, 645, 660, 928, 1176, 1239
BssMI GATC 6 cut(s) 214, 298, 307, 351, 578, 1184
BssNI GRCGYC 1 cut(s) 369
BssT1I CCWWGG 3 cut(s) 660, 1176, 1239
Bst2UI CCWGG 2 cut(s) 634, 929
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 1 cut(s) 431
BstACI GRCGYC 1 cut(s) 369
BstC8I GCNNGC 8 cut(s) 130, 145, 445, 452, 550, 642, 815, 1292
BstDEI CTNAG 4 cut(s) 24, 425, 564, 738
BstDSI CCRYGG 2 cut(s) 1176, 1239
BstEII GGTNACC 2 cut(s) 488, 968
BstF5I GGATG 1 cut(s) 1023
BstFNI CGCG 3 cut(s) 143, 377, 456
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 6 cut(s) 217, 301, 310, 354, 581, 1187
BstMAI GTCTC 4 cut(s) 132, 560, 597, 1036
BstMBI GATC 6 cut(s) 214, 298, 307, 351, 578, 1184
BstMCI CGRYCG 2 cut(s) 112, 605
BstMWI GCNNNNNNNGC 7 cut(s) 368, 453, 1220, 1223, 1226, 1229, 1287
BstNI CCWGG 2 cut(s) 634, 929
BstPAI GACNNNNGTC 1 cut(s) 108
BstPI GGTNACC 2 cut(s) 488, 968
BstSCI CCNGG 8 cut(s) 599, 621, 632, 644, 645, 914, 927, 987
BstSFI CTRYAG 2 cut(s) 75, 550
BstSLI GKGCMC 1 cut(s) 149
BstUI CGCG 3 cut(s) 143, 377, 456
BstV2I GAAGAC 3 cut(s) 108, 860, 1071
BsuRI GGCC 3 cut(s) 632, 1043, 1092
BtgI CCRYGG 2 cut(s) 1176, 1239
BtgZI GCGATG 2 cut(s) 358, 444
BtsCI GGATG 1 cut(s) 1023
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 345, 1198
Cac8I GCNNGC 8 cut(s) 130, 145, 445, 452, 550, 642, 815, 1292
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 4 cut(s) 153, 749, 785, 1290
Cfr13I GGNCC 2 cut(s) 262, 1113
Cfr9I CCCGGG 1 cut(s) 645
CseI GACGC 2 cut(s) 149, 377
Csp6I GTAC 2 cut(s) 558, 1196
CspAI ACCGGT 1 cut(s) 785
CviAII CATG 3 cut(s) 1075, 1177, 1240
CviQI GTAC 2 cut(s) 558, 1196
DdeI CTNAG 4 cut(s) 24, 425, 564, 738
DpnI GATC 6 cut(s) 216, 300, 309, 353, 580, 1186
DpnII GATC 6 cut(s) 214, 298, 307, 351, 578, 1184
DrdI GACNNNNNNGTC 2 cut(s) 260, 1120
DriI GACNNNNNGTC 1 cut(s) 1186
DseDI GACNNNNNNGTC 2 cut(s) 260, 1120
EaeI YGGCCR 1 cut(s) 1041
Eam1104I CTCTTC 1 cut(s) 431
Eam1105I GACNNNNNGTC 1 cut(s) 1186
EarI CTCTTC 1 cut(s) 431
EciI GGCGGA 1 cut(s) 768
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 3 cut(s) 660, 1176, 1239
Eco24I GRGCYC 4 cut(s) 89, 120, 646, 819
Eco47I GGWCC 2 cut(s) 262, 1113
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 1103
Eco88I CYCGRG 1 cut(s) 645
Eco91I GGTNACC 2 cut(s) 488, 968
EcoICRI GAGCTC 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 1113
EcoO65I GGTNACC 2 cut(s) 488, 968
EcoRI GAATTC 1 cut(s) 934
EcoRII CCWGG 2 cut(s) 632, 927
EcoT14I CCWWGG 3 cut(s) 660, 1176, 1239
EcoT22I ATGCAT 1 cut(s) 730
EcoT38I GRGCYC 4 cut(s) 89, 120, 646, 819
ErhI CCWWGG 3 cut(s) 660, 1176, 1239
Esp3I CGTCTC 2 cut(s) 132, 560
FaeI CATG 3 cut(s) 1078, 1180, 1243
FaiI YATR 6 cut(s) 77, 321, 536, 1076, 1178, 1241
FaqI GGGAC 5 cut(s) 266, 583, 765, 888, 1126
FatI CATG 3 cut(s) 1074, 1176, 1239
FauI CCCGC 6 cut(s) 41, 125, 136, 449, 606, 707
FbaI TGATCA 1 cut(s) 351
FokI GGATG 1 cut(s) 1010
FriOI GRGCYC 4 cut(s) 89, 120, 646, 819
GlaI GCGC 1 cut(s) 455
GsaI CCCAGC 2 cut(s) 317, 1262
GsuI CTGGAG 1 cut(s) 1145
HaeIII GGCC 3 cut(s) 632, 1043, 1092
HgaI GACGC 2 cut(s) 149, 377
HhaI GCGC 1 cut(s) 456
Hin1I GRCGYC 1 cut(s) 369
Hin1II CATG 3 cut(s) 1078, 1180, 1243
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HinfI GANTC 7 cut(s) 16, 180, 464, 517, 692, 756, 865
HphI GGTGA 7 cut(s) 494, 500, 628, 739, 980, 1131, 1148
Hpy166II GTNNAC 4 cut(s) 234, 619, 735, 1196
Hpy188I TCNGA 7 cut(s) 393, 417, 565, 607, 761, 1211, 1300
Hpy188III TCNNGA 9 cut(s) 82, 113, 121, 177, 195, 204, 305, 1016, 1162
Hpy8I GTNNAC 4 cut(s) 234, 619, 735, 1196
Hpy99I CGWCG 2 cut(s) 692, 1286
HpyAV CCTTC 4 cut(s) 396, 661, 1127, 1152
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4V TGCA 6 cut(s) 514, 552, 707, 728, 997, 1270
HpyF10VI GCNNNNNNNGC 7 cut(s) 368, 453, 1220, 1223, 1226, 1229, 1287
HpyF3I CTNAG 4 cut(s) 24, 425, 564, 738
Hsp92I GRCGYC 1 cut(s) 369
Hsp92II CATG 3 cut(s) 1078, 1180, 1243
HspAI GCGC 1 cut(s) 454
KflI GGGWCCC 1 cut(s) 1113
Kpn2I TCCGGA 1 cut(s) 203
KroI GCCGGC 1 cut(s) 1290
KroNI GCCGGC 1 cut(s) 1292
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 6 cut(s) 214, 298, 307, 351, 578, 1184
LmnI GCTCC 6 cut(s) 115, 379, 637, 945, 1211, 1237
LweI GCATC 4 cut(s) 600, 737, 969, 984
MaeIII GTNAC 4 cut(s) 274, 488, 968, 1137
MalI GATC 6 cut(s) 216, 300, 309, 353, 580, 1186
MboI GATC 6 cut(s) 214, 298, 307, 351, 578, 1184
MboII GAAGA 8 cut(s) 110, 113, 293, 448, 860, 1071, 1074, 1195
MhlI GDGCHC 5 cut(s) 89, 120, 149, 646, 819
MluCI AATT 6 cut(s) 48, 290, 496, 908, 934, 1126
MlyI GAGTC 2 cut(s) 701, 874
MmeI TCCRAC 2 cut(s) 585, 1259
Mph1103I ATGCAT 1 cut(s) 730
MroI TCCGGA 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 1290
MseI TTAA 1 cut(s) 159
MspA1I CMGCKG 2 cut(s) 1040, 1262
MspR9I CCNGG 8 cut(s) 601, 623, 634, 646, 647, 916, 929, 989
Mva1269I GAATGC 1 cut(s) 1294
MvaI CCWGG 2 cut(s) 634, 929
MvnI CGCG 3 cut(s) 143, 377, 456
MwoI GCNNNNNNNGC 7 cut(s) 368, 453, 1220, 1223, 1226, 1229, 1287
NaeI GCCGGC 1 cut(s) 1292
NciI CCSGG 6 cut(s) 601, 623, 646, 647, 916, 989
NcoI CCATGG 2 cut(s) 1176, 1239
NdeII GATC 6 cut(s) 214, 298, 307, 351, 578, 1184
NgoMIV GCCGGC 1 cut(s) 1290
NlaIII CATG 3 cut(s) 1078, 1180, 1243
NlaIV GGNNCC 4 cut(s) 170, 263, 1114, 1115
NmeAIII GCCGAG 1 cut(s) 1013
NmuCI GTSAC 3 cut(s) 488, 968, 1137
NsiI ATGCAT 1 cut(s) 730
PctI GAATGC 1 cut(s) 1294
PdiI GCCGGC 1 cut(s) 1292
PfeI GAWTC 5 cut(s) 16, 180, 464, 517, 756
PflMI CCANNNNNTGG 1 cut(s) 50
PinAI ACCGGT 1 cut(s) 785
PleI GAGTC 2 cut(s) 700, 873
PpsI GAGTC 2 cut(s) 700, 873
PpuMI RGGWCCY 1 cut(s) 1113
PshAI GACNNNNGTC 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 1113
Psp6I CCWGG 2 cut(s) 632, 927
PspEI GGTNACC 2 cut(s) 488, 968
PspFI CCCAGC 2 cut(s) 313, 1258
PspGI CCWGG 2 cut(s) 632, 927
PspN4I GGNNCC 4 cut(s) 170, 263, 1114, 1115
PspPI GGNCC 2 cut(s) 262, 1113
PspPPI RGGWCCY 1 cut(s) 1113
PstI CTGCAG 1 cut(s) 554
PvuII CAGCTG 1 cut(s) 1262
RsaI GTAC 2 cut(s) 559, 1197
RsaNI GTAC 2 cut(s) 558, 1196
SacI GAGCTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 6 cut(s) 214, 298, 307, 351, 578, 1184
Sau96I GGNCC 2 cut(s) 262, 1113
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 2 cut(s) 701, 874
ScrFI CCNGG 8 cut(s) 601, 623, 634, 646, 647, 916, 929, 989
SduI GDGCHC 5 cut(s) 89, 120, 149, 646, 819
SfaNI GCATC 4 cut(s) 600, 737, 969, 984
SfcI CTRYAG 2 cut(s) 75, 550
SgrAI CRCCGGYG 1 cut(s) 749
SinI GGWCC 2 cut(s) 262, 1113
SmaI CCCGGG 1 cut(s) 647
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 6 cut(s) 48, 290, 496, 908, 934, 1126
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 8 cut(s) 599, 621, 632, 644, 645, 914, 927, 987
StyI CCWWGG 3 cut(s) 660, 1176, 1239
TaaI ACNGT 1 cut(s) 779
TaqI TCGA 5 cut(s) 178, 194, 462, 539, 863
TasI AATT 6 cut(s) 48, 290, 496, 908, 934, 1126
TatI WGTACW 1 cut(s) 557
TauI GCSGC 7 cut(s) 365, 1043, 1053, 1092, 1220, 1223, 1229
TfiI GAWTC 5 cut(s) 16, 180, 464, 517, 756
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 345, 1198
TseFI GTSAC 3 cut(s) 488, 968, 1137
Tsp45I GTSAC 3 cut(s) 488, 968, 1137
TspDTI ATGAA 2 cut(s) 1119, 1195
TspGWI ACGGA 3 cut(s) 457, 1197, 1299
TspMI CCCGGG 1 cut(s) 645
TspRI CASTG 2 cut(s) 345, 1198
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 262, 1113
XapI RAATTY 1 cut(s) 934
XcmI CCANNNNNNNNNTGG 2 cut(s) 337, 1259
XmaI CCCGGG 1 cut(s) 645
ZrmI AGTACT 1 cut(s) 559
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.