Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005089

Physical Location & Seq

Genomic Coordinates Forward (+)

24172057 .. 24173508

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g21590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGAGGTGGAGGAGATTCAAGCCAGCAACAAGTTCCCAAGAATCGGAAATGGCAGCAGCAGAGATCATAAGCCATCACCCGAAGACGAAGACAATCAAGACCCATCATGCCTAGACTTCAAGAGGGCTGCCGCCGCCGCCACCGCCGCAGCTGATGCGGGCAACCGTCTCCGTGGGTGGCACCACTCCCGCATCATCCGCGTTTCCAGAGCATCCGGCGGCAAAGATCGGCACAGCAAGGTGTGGACTTCAAAAGGGTTGAGAGACCGGAGGGTCCGCTTGTCTGTAACCACCGCTATTCAGTTCTATGATCTCCAAGATCGGTTGGGTTACGACCAGCCCAGCAAAGCAGTTGAGTGGCTGATCAAAGCCGCTGCCGATGCCATCGCTGAGCTCCCTTCTCTGAACAATTCTTCGTTCCCCGACACGCCGAAGCAGCTCAGCGACGAGAAGAGGGCGAGCTGCGAGCGTGGCGGATTTGATTCGGCGGAGATTGAGTTCGATCAGAATTACCACCAGAATCAGAGCCAGCCCGGGAATCAAAGCCAGCACCTTTCGTTGTCGAAATCTGCTTGCTCGAGTACTTCCGAGACCAGCAAGGGATCGGGGCTTTCCCTCTCTCGGTCGGAGATTCGGGTGAACCGGTCGAAGGCCCGGGAGCGAGCGAGGGAGAGAGCCGCTAAGGACAAAGAGAAAGAGAGCATCGAGTCAACTTACCCAGGGAACATAAACAACATATCCCAACAAAATGGTTCTTTCACTGAGCTTCTCACTGCCGGCATCGGCAACATTCACAACAACAATTCTCCGACCGCATCTGCTCAGCATCATCAGCAGAATCATGGTGGCGGCGGCGAGCCCATTTTGTTCCACAAGGCAGCAGCACCGATGGATTACTTCAGCCCCGGGCTTCTGGGGCTGTCGTCTTCGGCCCGGACCCATCACTCGTCCGGATTCTCCGGACAAATCCATCTGGGGATGAACTCGATTCCGCAGACAATGTCGGTTGTCTCCCCGTTCAATGTGTCCGGGGAACATCACCACGGACATCACAGTTCGGAGCTTCAGCATTTCTCATTTGTTCCCGACCTGATCCCGGTCACTACTTCGTCGCAACCGGGCAGTGGCGTTGACTACAACCTGAACTTTTCGATCTCTTCTTCCGGCGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTTCCTCTTCACCGTCTCTTTTGCCTCATCACCTTCAGAGGTTTTCTCCCATAGACGGATCGTCCAATGTACCCTTCTTCATCGGAGCTGCCGCGGCTGCGGCTTCTCCAACCATGGAGAATCACCACCACCACCACCATCAGCAGCACCAGCAGCAATTCCCTGGTGGATTTGATCGCCGCTTGCAGCAGCTCCACGGTGACGGAACCCGGCATTCAGACCACAAGGGCAAGGCAAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0008285 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010099 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0042127 GO:0045935 GO:0045962 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

484

Amino Acids

52.51

Weight (kDa)

8.37

Isoelectric Point (pI)

62.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	73 - 232	4.1e-44	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30210 AT1G30210 AT4G18390 AT4G18390
fragaria_vesca	FvH4_3g05220 FvH4_3g05220
malus_domestica	MD05G1281100.v1.1 MD10G1259500.v1.1
prunus_persica	Prupe.3G099100_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1
pyrus_communis	pycom05g10530 pycom05g26120 pycom10g21590
rosa_chinensis	RchiOBHm_Chr5g0014491
rosa_laevigata	RLG00000032116
rosa_multiflora	Rmu_sc0000441.1_g000121 Rmu_sc0017039.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062060
rosa_rugosa	Rorug05G0018400 Rorug05G0018500
rosa_samantha	Rh5AG113800 Rh5BG110400 Rh5CG122300 Rh5DG109700
rosa_wichuraiana	Rw5G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	272, 1198
AccB1I	GGYRCC	1 cut(s)	180
AccII	CGCG	2 cut(s)	201, 1301
AccIII	TCCGGA	2 cut(s)	950, 959
AclWI	GGATC	3 cut(s)	610, 1087, 1273
AcuI	CTGAAG	4 cut(s)	883, 1049, 1181, 1226
AfaI	GTAC	2 cut(s)	583, 1278
AfiI	CCNNNNNNNGG	6 cut(s)	44, 621, 649, 1096, 1124, 1262
AgeI	ACCGGT	1 cut(s)	642
AgsI	TTSAA	5 cut(s)	20, 121, 252, 1021, 1183
AhdI	GACNNNNNGTC	1 cut(s)	1267
AjnI	CCWGG	2 cut(s)	718, 1369
AjuI	GAANNNNNNNTTGG	2 cut(s)	1265, 1297
AloI	GAACNNNNNNTCC	2 cut(s)	482, 514
AluBI	AGCT	8 cut(s)	152, 394, 439, 462, 766, 1063, 1295, 1399
AluI	AGCT	8 cut(s)	152, 394, 439, 462, 766, 1063, 1295, 1399
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	5 cut(s)	173, 258, 584, 1015, 1227
AlwI	GGATC	3 cut(s)	610, 1087, 1273
Ama87I	CYCGRG	4 cut(s)	533, 577, 654, 905
Aor13HI	TCCGGA	2 cut(s)	950, 959
AoxI	GGCC	3 cut(s)	651, 930, 1168
AsiGI	ACCGGT	1 cut(s)	642
AspS9I	GGNCC	5 cut(s)	274, 652, 931, 936, 1191
AsuHPI	GGTGA	7 cut(s)	69, 649, 1031, 1209, 1229, 1322, 1418
AvaI	CYCGRG	4 cut(s)	533, 577, 654, 905
AvaII	GGWCC	3 cut(s)	274, 936, 1191
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	396, 861
BbsI	GAAGAC	3 cut(s)	90, 96, 918
Bbv12I	GWGCWC	1 cut(s)	396
BccI	CCATC	7 cut(s)	82, 112, 392, 883, 948, 978, 1353
BciT130I	CCWGG	2 cut(s)	720, 1371
BclI	TGATCA	1 cut(s)	363
BcoDI	GTCTC	5 cut(s)	173, 258, 584, 1015, 1227
BfaI	CTAG	1 cut(s)	113
BlpI	GCTNAGC	3 cut(s)	390, 440, 822
BmcAI	AGTACT	1 cut(s)	583
Bme18I	GGWCC	3 cut(s)	274, 936, 1191
BmeRI	GACNNNNNGTC	1 cut(s)	1267
BmeT110I	CYCGRG	4 cut(s)	533, 577, 654, 905
BmgT120I	GGNCC	5 cut(s)	274, 652, 931, 936, 1191
BmiI	GGNNCC	6 cut(s)	182, 275, 938, 1192, 1193, 1414
BmsI	GCATC	8 cut(s)	145, 201, 221, 370, 711, 789, 824, 835
BpiI	GAAGAC	3 cut(s)	90, 96, 918
BplI	GAGNNNNNCTC	2 cut(s)	1237, 1269
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu1102I	GCTNAGC	3 cut(s)	390, 440, 822
BsaI	GGTCTC	2 cut(s)	258, 584
BsaWI	WCCGGW	4 cut(s)	267, 642, 950, 959
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 621, 649, 1096, 1124, 1262
Bse118I	RCCGGY	2 cut(s)	642, 776
BseAI	TCCGGA	2 cut(s)	950, 959
BseBI	CCWGG	2 cut(s)	720, 1371
BseGI	GGATG	3 cut(s)	195, 212, 984
BseLI	CCNNNNNNNGG	6 cut(s)	44, 621, 649, 1096, 1124, 1262
BseMII	CTCAG	4 cut(s)	381, 454, 753, 836
BseRI	GAGGAG	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	341
Bsh1236I	CGCG	2 cut(s)	201, 1301
Bsh1285I	CGRYCG	3 cut(s)	626, 647, 813
BshFI	GGCC	3 cut(s)	653, 932, 1170
BshNI	GGYRCC	1 cut(s)	180
BshTI	ACCGGT	1 cut(s)	642
BsiEI	CGRYCG	3 cut(s)	626, 647, 813
BsiHKAI	GWGCWC	1 cut(s)	396
BsiHKCI	CYCGRG	4 cut(s)	533, 577, 654, 905
BslFI	GGGAC	1 cut(s)	1204
BslI	CCNNNNNNNGG	6 cut(s)	44, 621, 649, 1096, 1124, 1262
BsmAI	GTCTC	5 cut(s)	173, 258, 584, 1015, 1227
BsmBI	CGTCTC	2 cut(s)	173, 1227
BsmFI	GGGAC	1 cut(s)	1204
BsmI	GAATGC	1 cut(s)	1420
BsnI	GGCC	3 cut(s)	653, 932, 1170
Bso31I	GGTCTC	2 cut(s)	258, 584
BsoBI	CYCGRG	4 cut(s)	533, 577, 654, 905
Bsp1286I	GDGCHC	2 cut(s)	396, 861
Bsp13I	TCCGGA	2 cut(s)	950, 959
Bsp1720I	GCTNAGC	3 cut(s)	390, 440, 822
Bsp19I	CCATGG	1 cut(s)	1320
BspANI	GGCC	3 cut(s)	653, 932, 1170
BspCNI	CTCAG	4 cut(s)	382, 453, 754, 835
BspEI	TCCGGA	2 cut(s)	950, 959
BspFNI	CGCG	2 cut(s)	201, 1301
BspLI	GGNNCC	6 cut(s)	182, 275, 938, 1192, 1193, 1414
BspPI	GGATC	3 cut(s)	610, 1087, 1273
BspT107I	GGYRCC	1 cut(s)	180
BspTNI	GGTCTC	2 cut(s)	258, 584
BsrFI	RCCGGY	2 cut(s)	642, 776
BssAI	RCCGGY	2 cut(s)	642, 776
BssT1I	CCWWGG	1 cut(s)	1320
Bst2UI	CCWGG	2 cut(s)	720, 1371
Bst4CI	ACNGT	4 cut(s)	167, 1055, 1221, 1406
Bst6I	CTCTTC	3 cut(s)	446, 1162, 1219
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstDEI	CTNAG	5 cut(s)	390, 440, 681, 762, 822
BstDSI	CCRYGG	5 cut(s)	172, 1042, 1299, 1320, 1402
BstF5I	GGATG	3 cut(s)	195, 212, 984
BstFNI	CGCG	2 cut(s)	201, 1301
BstMAI	GTCTC	5 cut(s)	173, 258, 584, 1015, 1227
BstMCI	CGRYCG	3 cut(s)	626, 647, 813
BstNI	CCWGG	2 cut(s)	720, 1371
BstUI	CGCG	2 cut(s)	201, 1301
BstV2I	GAAGAC	3 cut(s)	90, 96, 918
BstXI	CCANNNNNNTGG	1 cut(s)	749
BsuRI	GGCC	3 cut(s)	653, 932, 1170
BtgI	CCRYGG	5 cut(s)	172, 1042, 1299, 1320, 1402
BtgZI	GCGATG	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	195, 212, 984
BtsI	GCAGTG	2 cut(s)	771, 1129
BtsIMutI	CAGTG	3 cut(s)	759, 771, 1129
Cfr10I	RCCGGY	2 cut(s)	642, 776
Cfr13I	GGNCC	5 cut(s)	274, 652, 931, 936, 1191
Cfr42I	CCGCGG	1 cut(s)	1302
Cfr9I	CCCGGG	3 cut(s)	533, 654, 905
Csp6I	GTAC	2 cut(s)	582, 1277
CspAI	ACCGGT	1 cut(s)	642
CviAII	CATG	3 cut(s)	108, 842, 1321
CviQI	GTAC	2 cut(s)	582, 1277
DdeI	CTNAG	5 cut(s)	390, 440, 681, 762, 822
DrdI	GACNNNNNNGTC	2 cut(s)	272, 1198
DriI	GACNNNNNGTC	1 cut(s)	1267
DseDI	GACNNNNNNGTC	2 cut(s)	272, 1198
Eam1104I	CTCTTC	3 cut(s)	446, 1162, 1219
Eam1105I	GACNNNNNGTC	1 cut(s)	1267
EarI	CTCTTC	3 cut(s)	446, 1162, 1219
EciI	GGCGGA	2 cut(s)	489, 503
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	1320
Eco24I	GRGCYC	2 cut(s)	396, 861
Eco31I	GGTCTC	2 cut(s)	258, 584
Eco47I	GGWCC	3 cut(s)	274, 936, 1191
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	4 cut(s)	883, 1049, 1181, 1226
Eco88I	CYCGRG	4 cut(s)	533, 577, 654, 905
EcoICRI	GAGCTC	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	1191
EcoRII	CCWGG	2 cut(s)	718, 1369
EcoT14I	CCWWGG	1 cut(s)	1320
EcoT38I	GRGCYC	2 cut(s)	396, 861
ErhI	CCWWGG	1 cut(s)	1320
Esp3I	CGTCTC	2 cut(s)	173, 1227
FaeI	CATG	3 cut(s)	111, 845, 1324
FaiI	YATR	8 cut(s)	69, 109, 309, 728, 737, 843, 1259, 1322
FaqI	GGGAC	1 cut(s)	1204
FatI	CATG	3 cut(s)	107, 841, 1320
FauI	CCCGC	2 cut(s)	151, 197
FbaI	TGATCA	1 cut(s)	363
FokI	GGATG	3 cut(s)	182, 199, 991
FriOI	GRGCYC	2 cut(s)	396, 861
FspBI	CTAG	1 cut(s)	113
GsaI	CCCAGC	1 cut(s)	345
HaeIII	GGCC	3 cut(s)	653, 932, 1170
Hin1II	CATG	3 cut(s)	111, 845, 1324
HincII	GTYRAC	2 cut(s)	711, 1132
HindII	GTYRAC	2 cut(s)	711, 1132
HphI	GGTGA	7 cut(s)	69, 649, 1031, 1209, 1229, 1322, 1418
Hpy166II	GTNNAC	4 cut(s)	246, 640, 711, 1132
Hpy188III	TCNNGA	6 cut(s)	98, 121, 207, 951, 960, 1085
Hpy8I	GTNNAC	4 cut(s)	246, 640, 711, 1132
Hpy99I	CGWCG	2 cut(s)	449, 1114
HpyAV	CCTTC	5 cut(s)	408, 643, 1205, 1250, 1291
HpyCH4III	ACNGT	4 cut(s)	167, 1055, 1221, 1406
HpyCH4V	TGCA	1 cut(s)	1393
HpyF3I	CTNAG	5 cut(s)	390, 440, 681, 762, 822
Hsp92II	CATG	3 cut(s)	111, 845, 1324
KflI	GGGWCCC	1 cut(s)	1191
Kpn2I	TCCGGA	2 cut(s)	950, 959
KroI	GCCGGC	1 cut(s)	776
KroNI	GCCGGC	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	363
KspI	CCGCGG	1 cut(s)	1302
LmnI	GCTCC	5 cut(s)	399, 658, 1060, 1292, 1404
LweI	GCATC	8 cut(s)	145, 201, 221, 370, 711, 789, 824, 835
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	4 cut(s)	286, 329, 1099, 1406
MhlI	GDGCHC	2 cut(s)	396, 861
MluCI	AATT	5 cut(s)	409, 508, 802, 1204, 1364
MlyI	GAGTC	1 cut(s)	716
MmeI	TCCRAC	3 cut(s)	606, 833, 1340
MnlI	CCTC	9 cut(s)	4, 117, 264, 447, 626, 660, 1222, 1239, 1242
MroI	TCCGGA	2 cut(s)	950, 959
MroNI	GCCGGC	1 cut(s)	776
MspA1I	CMGCKG	3 cut(s)	152, 374, 1301
Mva1269I	GAATGC	1 cut(s)	1420
MvaI	CCWGG	2 cut(s)	720, 1371
MvnI	CGCG	2 cut(s)	201, 1301
NaeI	GCCGGC	1 cut(s)	778
NcoI	CCATGG	1 cut(s)	1320
NgoMIV	GCCGGC	1 cut(s)	776
NlaIII	CATG	3 cut(s)	111, 845, 1324
NlaIV	GGNNCC	6 cut(s)	182, 275, 938, 1192, 1193, 1414
NmuCI	GTSAC	2 cut(s)	1099, 1406
PaeR7I	CTCGAG	1 cut(s)	577
PasI	CCCWGGG	1 cut(s)	719
PctI	GAATGC	1 cut(s)	1420
PdiI	GCCGGC	1 cut(s)	778
PflFI	GACNNNGTC	1 cut(s)	1000
PinAI	ACCGGT	1 cut(s)	642
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
PpuMI	RGGWCCY	1 cut(s)	1191
Psp124BI	GAGCTC	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	1191
Psp6I	CCWGG	2 cut(s)	718, 1369
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	2 cut(s)	718, 1369
PspN4I	GGNNCC	6 cut(s)	182, 275, 938, 1192, 1193, 1414
PspPI	GGNCC	5 cut(s)	274, 652, 931, 936, 1191
PspPPI	RGGWCCY	1 cut(s)	1191
PspXI	VCTCGAGB	1 cut(s)	577
PsyI	GACNNNGTC	1 cut(s)	1000
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	583, 1278
RsaNI	GTAC	2 cut(s)	582, 1277
SacI	GAGCTC	1 cut(s)	396
SacII	CCGCGG	1 cut(s)	1302
Sau96I	GGNCC	5 cut(s)	274, 652, 931, 936, 1191
ScaI	AGTACT	1 cut(s)	583
SchI	GAGTC	1 cut(s)	716
SduI	GDGCHC	2 cut(s)	396, 861
SfaNI	GCATC	8 cut(s)	145, 201, 221, 370, 711, 789, 824, 835
Sfr274I	CTCGAG	1 cut(s)	577
Sfr303I	CCGCGG	1 cut(s)	1302
SgrBI	CCGCGG	1 cut(s)	1302
SinI	GGWCC	3 cut(s)	274, 936, 1191
SlaI	CTCGAG	1 cut(s)	577
SmaI	CCCGGG	3 cut(s)	535, 656, 907
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	5 cut(s)	409, 508, 802, 1204, 1364
SspMI	CTAG	1 cut(s)	113
SstI	GAGCTC	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	1320
TaaI	ACNGT	4 cut(s)	167, 1055, 1221, 1406
TaqI	TCGA	7 cut(s)	501, 563, 578, 647, 705, 986, 1151
TaqII	GACCGA	1 cut(s)	612
TasI	AATT	5 cut(s)	409, 508, 802, 1204, 1364
TatI	WGTACW	1 cut(s)	581
TscAI	CASTG	3 cut(s)	766, 778, 1129
TseFI	GTSAC	2 cut(s)	1099, 1406
Tsp45I	GTSAC	2 cut(s)	1099, 1406
TspDTI	ATGAA	2 cut(s)	995, 1276
TspGWI	ACGGA	4 cut(s)	161, 1059, 1278, 1425
TspMI	CCCGGG	3 cut(s)	533, 654, 905
TspRI	CASTG	3 cut(s)	766, 778, 1129
Tth111I	GACNNNGTC	1 cut(s)	1000
VpaK11BI	GGWCC	3 cut(s)	274, 936, 1191
XhoI	CTCGAG	1 cut(s)	577
XmaI	CCCGGG	3 cut(s)	533, 654, 905
XspI	CTAG	1 cut(s)	113
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.