Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005089

Physical Location & Seq

Genomic Coordinates Reverse (-)

10627185 .. 10630630

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAGGTTGACGAAGACATTGAGTTACAAAAACATCAAGAACAACAAAGCAGAAAGCTACAAAGATTCTCAGAGGACAACACTGGACTAATGAGGAATTGGAACAATCCATCGTCTCGTATCATTAGGGTTTCACGAGCTTCTGGTGGCAAAGATAGACATAGCAAAGTGTTAACATCAAAAGGTTTAAGAGATCGAAGAATACGTCTCTCAGTTGCTACAGCAATCCAGTTCTATGATCTTCAAGATCGTCTTGGATTTGATCAGCCAAGTAAAGCTGTTGAATGGTTAATCAATGCAGCTTCTGATTCAATCACTGATCTTCCTTTGCTTAACACAAATTTTGATCATCTTGATCAGAATCAGAATCAGACCAAATCTGCTTGTAGTAGTGGAACATCTGAGAGTTCGCTGTTGTCGTTATCAAGAACAGAGATTCGTGGGAAAGCAAGAGAGAGAGCTAGAGAAAGAACAGCTAAAGACAGAGATAAAGATTTGCAGAATGCTCATAGCTCATTCACTCAGCTTCTCACTGGTGGTTTTGACCAACAACCGAGTAACCGGAATTGGACCGGTGGTTCTGATTGCTTTAACCCGGTTCAGCTGCAAATACCAAACTCTTCCTCTCAAGAGCCAATGAATCACCCATTCTCCTTTGTACCTGATTACAACTTTGGAATCTCTTCTTCTTCTTCTGCCATTAATGGTGGTTACAGTAGTAGGGGGACCCTTCAGTCCAATTCACAATCTCTCTTTCTGAATAACAACAACAACATTACTCAAAGGTCATCGATTTCTTCGTCTTCTTCTTCCTCTTCTCCAATGGATAGTCAAAGCATTTCCTTTTTCATGGCTACACCTCCACCTCTTGACCACCATAACCACCAGCTTCCGGAGACTTTTGATGGTCGGCTATATCTTTATTACGGCGAAGGAAACCGGAGCTCTGATGACAAGGCAAAGGAAAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0008285 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010099 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0042127 GO:0045935 GO:0045962 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

324

Amino Acids

36.38

Weight (kDa)

7.83

Isoelectric Point (pI)

63.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	49 - 133	1.3e-32	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30210 AT1G30210 AT4G18390 AT4G18390
fragaria_vesca	FvH4_3g05220 FvH4_3g05220
malus_domestica	MD05G1281100.v1.1 MD10G1259500.v1.1
prunus_persica	Prupe.3G099100_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1
pyrus_communis	pycom05g10530 pycom05g26120 pycom10g21590
rosa_chinensis	RchiOBHm_Chr5g0014491
rosa_laevigata	RLG00000032116
rosa_multiflora	Rmu_sc0000441.1_g000121 Rmu_sc0017039.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062060
rosa_rugosa	Rorug05G0018400 Rorug05G0018500
rosa_samantha	Rh5AG113800 Rh5BG110400 Rh5CG122300 Rh5DG109700
rosa_wichuraiana	Rw5G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	733
AccIII	TCCGGA	1 cut(s)	892
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	716
AfaI	GTAC	1 cut(s)	660
AfiI	CCNNNNNNNGG	1 cut(s)	892
AgeI	ACCGGT	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	245, 284, 312
AloI	GAACNNNNNNTCC	2 cut(s)	562, 594
Alw21I	GWGCWC	1 cut(s)	947
Alw26I	GTCTC	3 cut(s)	120, 212, 890
AlwNI	CAGNNNCTG	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	892
ApeKI	GCWGC	2 cut(s)	299, 604
ApoI	RAATTY	1 cut(s)	340
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
AseI	ATTAAT	1 cut(s)	702
AsiGI	ACCGGT	1 cut(s)	572
Asp700I	GAANNNNTTC	1 cut(s)	682
AspS9I	GGNCC	2 cut(s)	570, 726
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	635
AvaII	GGWCC	2 cut(s)	570, 726
BanII	GRGCYC	1 cut(s)	947
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	2 cut(s)	21, 795
Bbv12I	GWGCWC	1 cut(s)	947
BbvI	GCAGC	2 cut(s)	311, 591
BccI	CCATC	2 cut(s)	118, 899
BceAI	ACGGC	1 cut(s)	943
BclI	TGATCA	3 cut(s)	262, 346, 355
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	3 cut(s)	120, 212, 890
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	300, 605
BlsI	GCNGC	2 cut(s)	301, 606
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	2 cut(s)	570, 726
BmgT120I	GGNCC	2 cut(s)	570, 726
BmiI	GGNNCC	2 cut(s)	727, 728
BmrFI	CCNGG	1 cut(s)	596
BpiI	GAAGAC	2 cut(s)	21, 795
BpuEI	CTTGAG	1 cut(s)	612
BpuMI	CCSGG	1 cut(s)	596
Bsa29I	ATCGAT	1 cut(s)	791
BsaBI	GATNNNNATC	1 cut(s)	360
BsaWI	WCCGGW	4 cut(s)	561, 572, 892, 939
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	1 cut(s)	892
Bse118I	RCCGGY	1 cut(s)	572
Bse1I	ACTGG	3 cut(s)	88, 229, 538
Bse8I	GATNNNNATC	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	892
BseCI	ATCGAT	1 cut(s)	791
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	892
BseMII	CTCAG	4 cut(s)	84, 225, 393, 536
BseNI	ACTGG	3 cut(s)	88, 229, 538
BseXI	GCAGC	2 cut(s)	311, 591
BshTI	ACCGGT	1 cut(s)	572
BshVI	ATCGAT	1 cut(s)	791
BsiHKAI	GWGCWC	1 cut(s)	947
BsiSI	CCGG	5 cut(s)	562, 573, 596, 893, 940
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	1 cut(s)	892
BsmAI	GTCTC	3 cut(s)	120, 212, 890
BsmBI	CGTCTC	2 cut(s)	120, 212
BsmFI	GGGAC	1 cut(s)	739
BsmI	GAATGC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	947
Bsp13I	TCCGGA	1 cut(s)	892
Bsp143I	GATC	7 cut(s)	193, 238, 247, 262, 319, 346, 355
BspCNI	CTCAG	4 cut(s)	83, 224, 394, 535
BspDI	ATCGAT	1 cut(s)	791
BspEI	TCCGGA	1 cut(s)	892
BspLI	GGNNCC	2 cut(s)	727, 728
BsrFI	RCCGGY	1 cut(s)	572
BsrI	ACTGG	3 cut(s)	88, 229, 538
BssAI	RCCGGY	1 cut(s)	572
BssMI	GATC	7 cut(s)	193, 238, 247, 262, 319, 346, 355
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	716
Bst6I	CTCTTC	3 cut(s)	625, 688, 820
BstDEI	CTNAG	4 cut(s)	70, 211, 402, 522
BstKTI	GATC	7 cut(s)	196, 241, 250, 265, 322, 349, 358
BstMAI	GTCTC	3 cut(s)	120, 212, 890
BstMBI	GATC	7 cut(s)	193, 238, 247, 262, 319, 346, 355
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	311, 591
BstV2I	GAAGAC	2 cut(s)	21, 795
Bsu15I	ATCGAT	1 cut(s)	791
BsuTUI	ATCGAT	1 cut(s)	791
BtsIMutI	CAGTG	3 cut(s)	81, 315, 531
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	572
Cfr13I	GGNCC	2 cut(s)	570, 726
ClaI	ATCGAT	1 cut(s)	791
Csp6I	GTAC	1 cut(s)	659
CspAI	ACCGGT	1 cut(s)	572
CviAII	CATG	1 cut(s)	850
CviQI	GTAC	1 cut(s)	659
DdeI	CTNAG	4 cut(s)	70, 211, 402, 522
DpnI	GATC	7 cut(s)	195, 240, 249, 264, 321, 348, 357
DpnII	GATC	7 cut(s)	193, 238, 247, 262, 319, 346, 355
DrdI	GACNNNNNNGTC	1 cut(s)	733
DseDI	GACNNNNNNGTC	1 cut(s)	733
Eam1104I	CTCTTC	3 cut(s)	625, 688, 820
EarI	CTCTTC	3 cut(s)	625, 688, 820
Ecl136II	GAGCTC	1 cut(s)	945
Eco24I	GRGCYC	1 cut(s)	947
Eco47I	GGWCC	2 cut(s)	570, 726
Eco53kI	GAGCTC	1 cut(s)	945
Eco57I	CTGAAG	1 cut(s)	716
EcoICRI	GAGCTC	1 cut(s)	945
EcoO109I	RGGNCCY	1 cut(s)	726
EcoT38I	GRGCYC	1 cut(s)	947
Esp3I	CGTCTC	2 cut(s)	120, 212
FaeI	CATG	1 cut(s)	853
FaiI	YATR	6 cut(s)	162, 237, 510, 851, 879, 916
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	1 cut(s)	849
FbaI	TGATCA	3 cut(s)	262, 346, 355
Fnu4HI	GCNGC	2 cut(s)	300, 605
FriOI	GRGCYC	1 cut(s)	947
Fsp4HI	GCNGC	2 cut(s)	300, 605
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	2 cut(s)	300, 605
HapII	CCGG	5 cut(s)	562, 573, 596, 893, 940
Hin1II	CATG	1 cut(s)	853
HincII	GTYRAC	2 cut(s)	10, 174
HindII	GTYRAC	2 cut(s)	10, 174
HinfI	GANTC	7 cut(s)	66, 308, 361, 367, 436, 640, 678
HpaI	GTTAAC	1 cut(s)	174
HpaII	CCGG	5 cut(s)	562, 573, 596, 893, 940
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	2 cut(s)	10, 174
Hpy188I	TCNGA	9 cut(s)	73, 307, 360, 366, 372, 403, 583, 759, 949
Hpy188III	TCNNGA	8 cut(s)	38, 135, 245, 353, 426, 629, 869, 893
Hpy8I	GTNNAC	2 cut(s)	10, 174
HpyAV	CCTTC	2 cut(s)	740, 926
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	299, 499, 607
HpyF3I	CTNAG	4 cut(s)	70, 211, 402, 522
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	1 cut(s)	853
KflI	GGGWCCC	1 cut(s)	726
Kpn2I	TCCGGA	1 cut(s)	892
Ksp22I	TGATCA	3 cut(s)	262, 346, 355
KspAI	GTTAAC	1 cut(s)	174
Kzo9I	GATC	7 cut(s)	193, 238, 247, 262, 319, 346, 355
LmnI	GCTCC	1 cut(s)	942
Lsp1109I	GCAGC	2 cut(s)	311, 591
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	3 cut(s)	24, 557, 710
MalI	GATC	7 cut(s)	195, 240, 249, 264, 321, 348, 357
MboI	GATC	7 cut(s)	193, 238, 247, 262, 319, 346, 355
MhlI	GDGCHC	1 cut(s)	947
MluCI	AATT	4 cut(s)	97, 340, 565, 739
MnlI	CCTC	6 cut(s)	67, 87, 634, 823, 870, 876
MroI	TCCGGA	1 cut(s)	892
MroXI	GAANNNNTTC	1 cut(s)	682
MseI	TTAA	6 cut(s)	173, 188, 290, 333, 591, 702
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	5 cut(s)	562, 573, 596, 893, 940
MspR9I	CCNGG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	508
NciI	CCSGG	1 cut(s)	596
NdeII	GATC	7 cut(s)	193, 238, 247, 262, 319, 346, 355
NlaIII	CATG	1 cut(s)	853
NlaIV	GGNNCC	2 cut(s)	727, 728
PcsI	WCGNNNNNNNCGW	3 cut(s)	202, 416, 797
PctI	GAATGC	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	682
PfeI	GAWTC	7 cut(s)	66, 308, 361, 367, 436, 640, 678
PinAI	ACCGGT	1 cut(s)	572
PkrI	GCNGC	2 cut(s)	301, 606
PpuMI	RGGWCCY	1 cut(s)	726
PshBI	ATTAAT	1 cut(s)	702
Psp124BI	GAGCTC	1 cut(s)	947
Psp5II	RGGWCCY	1 cut(s)	726
PspN4I	GGNNCC	2 cut(s)	727, 728
PspPI	GGNCC	2 cut(s)	570, 726
PspPPI	RGGWCCY	1 cut(s)	726
PstNI	CAGNNNCTG	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
SacI	GAGCTC	1 cut(s)	947
SaqAI	TTAA	6 cut(s)	173, 188, 290, 333, 591, 702
SatI	GCNGC	2 cut(s)	300, 605
Sau3AI	GATC	7 cut(s)	193, 238, 247, 262, 319, 346, 355
Sau96I	GGNCC	2 cut(s)	570, 726
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	947
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	2 cut(s)	570, 726
SmlI	CTYRAG	1 cut(s)	627
SmoI	CTYRAG	1 cut(s)	627
Sse9I	AATT	4 cut(s)	97, 340, 565, 739
SspMI	CTAG	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	947
StyD4I	CCNGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	716
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	196, 791
TasI	AATT	4 cut(s)	97, 340, 565, 739
TfiI	GAWTC	7 cut(s)	66, 308, 361, 367, 436, 640, 678
Tru1I	TTAA	6 cut(s)	173, 188, 290, 333, 591, 702
Tru9I	TTAA	6 cut(s)	173, 188, 290, 333, 591, 702
TscAI	CASTG	3 cut(s)	88, 322, 538
TseI	GCWGC	2 cut(s)	299, 604
TspDTI	ATGAA	2 cut(s)	653, 838
TspRI	CASTG	3 cut(s)	88, 322, 538
VpaK11BI	GGWCC	2 cut(s)	570, 726
VspI	ATTAAT	1 cut(s)	702
XapI	RAATTY	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	682
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.