pycom05g26120
TCP Family

Transcription factor TCP2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
27385443 .. 27386717
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g26120.1

Sequence Viewer

Length: 1275 bp
ATGGAGGTGGAGGAGATACAAGCCAGCAACAAGTTCCCAAGAATCGGAAACGGCAGCAGCAGAGATCACAAGCCATCACCCGAAGACGACGACAATCAAGACCCATCATGCCTAGAACTCAAGAGGGACGCCGCCACCACAGCCGCAGCCGATGCGGGCAACCGTCTCCGCGGTTGGCACCACTCCCGCATCATCCGCGTTTCCAGAGCCTCCGGCGGCAAAGATCGGCACAGCAAGGTCTGGACTTCAAAAGGGTTGAGAGACCGGAGGGTCCGGTTGTCTGTAGCCACCGCCATTCAGTTCTACGATCTCCAAGATCGGTTAAATTACGACCAGCCCAGCAAAGCAATTGAGTGGCTGATCAAAGCCGCCGCCGATGCCATCGCTGAGCTCCCTTCTCTGAACAATTCTTCGTTCCCTGACACGCCTAAGCAGCTCAGCGACGAGAAGAGGGCGAGCTGCGAGCGTGGAGGGTTTGATTCGGCAGAGATTGAGTTCGATCAGAACTACAACCAGAATCAGAACCAGACCGGGAACCAAAGTCAGCACCTTTCCTTGTCGAAATCCGCTTGCTCCAGTACTTCCGAGACCAGCAAGGGATCCGGGCTGTCCCTTTCGCGGTCGGAGGTTCGGGTGAACCGGTCCAAGGCCCGGGAGCGGGCAAGAGAAAGAGCCGCCAAGGACAAGGATAAAGAAAGTAAAGAAAGCATTGAGTCAGCTTGCCAGCACAACATAAACAACAACATTTCCCAACAAAATGCTTCTTTCACTGAACTTCTCACCGCGGGCATCGGCACTGCTCACAACAACAACGATTCTCCGACCGCATCTGCTCATCATCATCAGCAGAATCATGGCGGCGGCGGCGGTGAGCCCATTTTGTTCCACAAGGCACCAGCACCAATGGATTACTTCAGTCCCGGGCTTCTTGGGTTGTCCTCGGCCCGGACTCATCAATCGGCCGGATTCTCCAGACAAATCCATTTGGGGATGAACTCTATTCCGCAGACAATGTCGCTTGTCTCCCCGTTCAATGTGTCCGGGGAACATCATCACGGACATCACAGTTCGGAGCTTCAGCACTTCTCGTTTGTTCCCGACCTCATCCCGGTCACGACCTCGACGGAACCGGGCAATGGCGGTGACTACAACCTGAACTTTTCGATCGATCTTCTTCCGGCGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTTCCTCTTCACCGTCTCTTATGCCTCATCACCTTCAGAGGTTTTCTCCCATAG

Protein Analysis

425

Amino Acids

46.35

Weight (kDa)

6.88

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 72 - 230 2.3e-42 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 269, 1212
AccB1I GGYRCC 2 cut(s) 177, 892
AccBSI CCGCTC 1 cut(s) 658
AccII CGCG 4 cut(s) 171, 198, 619, 785
AclWI GGATC 2 cut(s) 594, 607
AcoI YGGCCR 1 cut(s) 960
AcuI CTGAAG 4 cut(s) 898, 1061, 1195, 1240
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 9 cut(s) 44, 618, 646, 651, 657, 658, 945, 1108, 1136
AgeI ACCGGT 1 cut(s) 639
AgsI TTSAA 3 cut(s) 249, 1033, 1197
AluBI AGCT 5 cut(s) 391, 436, 459, 719, 1075
AluI AGCT 5 cut(s) 391, 436, 459, 719, 1075
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 5 cut(s) 170, 255, 581, 1027, 1241
AlwI GGATC 2 cut(s) 594, 607
Ama87I CYCGRG 2 cut(s) 651, 920
AoxI GGCC 4 cut(s) 648, 942, 960, 1182
ApeKI GCWGC 5 cut(s) 54, 57, 146, 433, 459
AsiGI ACCGGT 1 cut(s) 639
AspS9I GGNCC 5 cut(s) 271, 642, 649, 943, 1205
AsuHPI GGTGA 7 cut(s) 69, 646, 772, 881, 1154, 1223, 1243
AvaI CYCGRG 2 cut(s) 651, 920
AvaII GGWCC 3 cut(s) 271, 642, 1205
BamHI GGATCC 1 cut(s) 599
BanI GGYRCC 2 cut(s) 177, 892
BanII GRGCYC 2 cut(s) 393, 876
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 5 cut(s) 66, 69, 158, 445, 446
BccI CCATC 3 cut(s) 82, 112, 389
BceAI ACGGC 1 cut(s) 67
BclI TGATCA 1 cut(s) 360
BcoDI GTCTC 5 cut(s) 170, 255, 581, 1027, 1241
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 282
BlpI GCTNAGC 2 cut(s) 387, 437
BmcAI AGTACT 1 cut(s) 580
Bme18I GGWCC 3 cut(s) 271, 642, 1205
BmeT110I CYCGRG 2 cut(s) 651, 920
BmgT120I GGNCC 5 cut(s) 271, 642, 649, 943, 1205
BmiI GGNNCC 8 cut(s) 179, 272, 536, 601, 894, 1128, 1206, 1207
BmsI GCATC 5 cut(s) 142, 198, 367, 798, 836
BpiI GAAGAC 1 cut(s) 90
BplI GAGNNNNNCTC 1 cut(s) 1251
BpmI CTGGAG 2 cut(s) 559, 955
Bpu10I CCTNAGC 1 cut(s) 429
Bpu1102I GCTNAGC 2 cut(s) 387, 437
BpuEI CTTGAG 1 cut(s) 104
Bsa29I ATCGAT 1 cut(s) 1167
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 2 cut(s) 255, 581
BsaJI CCNNGG 8 cut(s) 169, 645, 651, 678, 783, 920, 939, 1041
BsaWI WCCGGW 3 cut(s) 264, 273, 639
Bsc4I CCNNNNNNNGG 9 cut(s) 44, 618, 646, 651, 657, 658, 945, 1108, 1136
Bse118I RCCGGY 1 cut(s) 639
Bse1I ACTGG 1 cut(s) 576
Bse3DI GCAATG 1 cut(s) 1141
BseCI ATCGAT 1 cut(s) 1167
BseDI CCNNGG 8 cut(s) 169, 645, 651, 678, 783, 920, 939, 1041
BseGI GGATG 3 cut(s) 192, 996, 1104
BseLI CCNNNNNNNGG 9 cut(s) 44, 618, 646, 651, 657, 658, 945, 1108, 1136
BseMI GCAATG 1 cut(s) 1141
BseMII CTCAG 2 cut(s) 378, 451
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 1 cut(s) 26
BseX3I CGGCCG 1 cut(s) 960
BseXI GCAGC 5 cut(s) 66, 69, 158, 445, 446
BseYI CCCAGC 1 cut(s) 338
Bsh1236I CGCG 4 cut(s) 171, 198, 619, 785
Bsh1285I CGRYCG 4 cut(s) 623, 825, 963, 1167
BshFI GGCC 4 cut(s) 650, 944, 962, 1184
BshNI GGYRCC 2 cut(s) 177, 892
BshTI ACCGGT 1 cut(s) 639
BshVI ATCGAT 1 cut(s) 1167
BsiEI CGRYCG 4 cut(s) 623, 825, 963, 1167
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 2 cut(s) 651, 920
BslFI GGGAC 4 cut(s) 140, 595, 903, 1218
BslI CCNNNNNNNGG 9 cut(s) 44, 618, 646, 651, 657, 658, 945, 1108, 1136
BsmAI GTCTC 5 cut(s) 170, 255, 581, 1027, 1241
BsmBI CGTCTC 2 cut(s) 170, 1241
BsmFI GGGAC 4 cut(s) 140, 595, 903, 1218
BsnI GGCC 4 cut(s) 650, 944, 962, 1184
Bso31I GGTCTC 2 cut(s) 255, 581
BsoBI CYCGRG 2 cut(s) 651, 920
Bsp1286I GDGCHC 2 cut(s) 393, 876
Bsp143I GATC 9 cut(s) 64, 223, 307, 316, 360, 499, 599, 1164, 1168
Bsp1720I GCTNAGC 2 cut(s) 387, 437
BspANI GGCC 4 cut(s) 650, 944, 962, 1184
BspCNI CTCAG 2 cut(s) 379, 450
BspDI ATCGAT 1 cut(s) 1167
BspFNI CGCG 4 cut(s) 171, 198, 619, 785
BspLI GGNNCC 8 cut(s) 179, 272, 536, 601, 894, 1128, 1206, 1207
BspPI GGATC 2 cut(s) 594, 607
BspT107I GGYRCC 2 cut(s) 177, 892
BspTNI GGTCTC 2 cut(s) 255, 581
BsrBI CCGCTC 1 cut(s) 658
BsrDI GCAATG 1 cut(s) 1141
BsrFI RCCGGY 1 cut(s) 639
BsrI ACTGG 1 cut(s) 576
BssAI RCCGGY 1 cut(s) 639
BssECI CCNNGG 8 cut(s) 169, 645, 651, 678, 783, 920, 939, 1041
BssMI GATC 9 cut(s) 64, 223, 307, 316, 360, 499, 599, 1164, 1168
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 2 cut(s) 645, 678
Bst4CI ACNGT 3 cut(s) 164, 1067, 1235
Bst6I CTCTTC 2 cut(s) 443, 1233
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 9 cut(s) 25, 157, 457, 464, 571, 660, 721, 725, 787
BstDEI CTNAG 3 cut(s) 387, 429, 437
BstDSI CCRYGG 2 cut(s) 169, 783
BstF5I GGATG 3 cut(s) 192, 996, 1104
BstFNI CGCG 4 cut(s) 171, 198, 619, 785
BstKTI GATC 9 cut(s) 67, 226, 310, 319, 363, 502, 602, 1167, 1171
BstMAI GTCTC 5 cut(s) 170, 255, 581, 1027, 1241
BstMBI GATC 9 cut(s) 64, 223, 307, 316, 360, 499, 599, 1164, 1168
BstMCI CGRYCG 4 cut(s) 623, 825, 963, 1167
BstMWI GCNNNNNNNGC 6 cut(s) 140, 152, 195, 377, 433, 864
BstSFI CTRYAG 1 cut(s) 282
BstUI CGCG 4 cut(s) 171, 198, 619, 785
BstV1I GCAGC 5 cut(s) 66, 69, 158, 445, 446
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 599
BstYI RGATCY 1 cut(s) 599
BstZI CGGCCG 1 cut(s) 960
Bsu15I ATCGAT 1 cut(s) 1167
BsuRI GGCC 4 cut(s) 650, 944, 962, 1184
BsuTUI ATCGAT 1 cut(s) 1167
BtgI CCRYGG 2 cut(s) 169, 783
BtgZI GCGATG 1 cut(s) 367
BtsCI GGATG 3 cut(s) 192, 996, 1104
BtsI GCAGTG 1 cut(s) 795
BtsIMutI CAGTG 2 cut(s) 768, 795
Cac8I GCNNGC 9 cut(s) 25, 157, 457, 464, 571, 660, 721, 725, 787
Cfr10I RCCGGY 1 cut(s) 639
Cfr13I GGNCC 5 cut(s) 271, 642, 649, 943, 1205
Cfr42I CCGCGG 2 cut(s) 172, 786
Cfr9I CCCGGG 2 cut(s) 651, 920
ClaI ATCGAT 1 cut(s) 1167
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 579
CspAI ACCGGT 1 cut(s) 639
CviAII CATG 2 cut(s) 108, 854
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 3 cut(s) 387, 429, 437
DpnI GATC 9 cut(s) 66, 225, 309, 318, 362, 501, 601, 1166, 1170
DpnII GATC 9 cut(s) 64, 223, 307, 316, 360, 499, 599, 1164, 1168
DrdI GACNNNNNNGTC 2 cut(s) 269, 1212
DseDI GACNNNNNNGTC 2 cut(s) 269, 1212
EaeI YGGCCR 1 cut(s) 960
EagI CGGCCG 1 cut(s) 960
Eam1104I CTCTTC 2 cut(s) 443, 1233
EarI CTCTTC 2 cut(s) 443, 1233
Ecl136II GAGCTC 1 cut(s) 391
EclXI CGGCCG 1 cut(s) 960
Eco130I CCWWGG 2 cut(s) 645, 678
Eco24I GRGCYC 2 cut(s) 393, 876
Eco31I GGTCTC 2 cut(s) 255, 581
Eco47I GGWCC 3 cut(s) 271, 642, 1205
Eco52I CGGCCG 1 cut(s) 960
Eco53kI GAGCTC 1 cut(s) 391
Eco57I CTGAAG 4 cut(s) 898, 1061, 1195, 1240
Eco88I CYCGRG 2 cut(s) 651, 920
EcoICRI GAGCTC 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 1205
EcoT14I CCWWGG 2 cut(s) 645, 678
EcoT38I GRGCYC 2 cut(s) 393, 876
ErhI CCWWGG 2 cut(s) 645, 678
Esp3I CGTCTC 2 cut(s) 170, 1241
FaeI CATG 2 cut(s) 111, 857
FaiI YATR 5 cut(s) 109, 734, 855, 1243, 1273
FaqI GGGAC 4 cut(s) 140, 595, 903, 1218
FatI CATG 2 cut(s) 107, 853
FauI CCCGC 4 cut(s) 148, 194, 651, 778
FbaI TGATCA 1 cut(s) 360
FokI GGATG 3 cut(s) 179, 1003, 1091
FriOI GRGCYC 2 cut(s) 393, 876
FspBI CTAG 1 cut(s) 113
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 2 cut(s) 559, 955
HaeIII GGCC 4 cut(s) 650, 944, 962, 1184
HgaI GACGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 111, 857
HinfI GANTC 8 cut(s) 42, 479, 517, 713, 815, 850, 949, 966
HphI GGTGA 7 cut(s) 69, 646, 772, 881, 1154, 1223, 1243
Hpy166II GTNNAC 1 cut(s) 637
Hpy188I TCNGA 9 cut(s) 47, 402, 504, 522, 586, 625, 822, 1072, 1259
Hpy188III TCNNGA 7 cut(s) 98, 121, 204, 241, 972, 1097, 1114
Hpy8I GTNNAC 1 cut(s) 637
Hpy99I CGWCG 3 cut(s) 92, 446, 1126
HpyAV CCTTC 3 cut(s) 405, 1219, 1264
HpyCH4III ACNGT 3 cut(s) 164, 1067, 1235
HpyF10VI GCNNNNNNNGC 6 cut(s) 140, 152, 195, 377, 433, 864
HpyF3I CTNAG 3 cut(s) 387, 429, 437
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 111, 857
KflI GGGWCCC 1 cut(s) 1205
Ksp22I TGATCA 1 cut(s) 360
KspI CCGCGG 2 cut(s) 172, 786
Kzo9I GATC 9 cut(s) 64, 223, 307, 316, 360, 499, 599, 1164, 1168
LmnI GCTCC 4 cut(s) 396, 578, 655, 1072
Lsp1109I GCAGC 5 cut(s) 66, 69, 158, 445, 446
LweI GCATC 5 cut(s) 142, 198, 367, 798, 836
MaeI CTAG 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 1111, 1142
MalI GATC 9 cut(s) 66, 225, 309, 318, 362, 501, 601, 1166, 1170
MbiI CCGCTC 1 cut(s) 658
MboI GATC 9 cut(s) 64, 223, 307, 316, 360, 499, 599, 1164, 1168
MboII GAAGA 7 cut(s) 95, 402, 460, 1163, 1166, 1214, 1220
MfeI CAATTG 1 cut(s) 348
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 2 cut(s) 393, 876
MluCI AATT 4 cut(s) 325, 348, 406, 1218
MlyI GAGTC 2 cut(s) 722, 943
MmeI TCCRAC 2 cut(s) 603, 845
MseI TTAA 1 cut(s) 323
MspA1I CMGCKG 2 cut(s) 171, 785
MunI CAATTG 1 cut(s) 348
MvnI CGCG 4 cut(s) 171, 198, 619, 785
MwoI GCNNNNNNNGC 6 cut(s) 140, 152, 195, 377, 433, 864
NdeII GATC 9 cut(s) 64, 223, 307, 316, 360, 499, 599, 1164, 1168
NlaIII CATG 2 cut(s) 111, 857
NlaIV GGNNCC 8 cut(s) 179, 272, 536, 601, 894, 1128, 1206, 1207
NmeAIII GCCGAG 1 cut(s) 920
NmuCI GTSAC 2 cut(s) 1111, 1142
PfeI GAWTC 6 cut(s) 42, 479, 517, 815, 850, 966
PflFI GACNNNGTC 1 cut(s) 1012
PinAI ACCGGT 1 cut(s) 639
Ple19I CGATCG 1 cut(s) 1167
PleI GAGTC 2 cut(s) 721, 943
PpsI GAGTC 2 cut(s) 721, 943
PpuMI RGGWCCY 1 cut(s) 1205
Psp124BI GAGCTC 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 1205
PspFI CCCAGC 1 cut(s) 338
PspN4I GGNNCC 8 cut(s) 179, 272, 536, 601, 894, 1128, 1206, 1207
PspPI GGNCC 5 cut(s) 271, 642, 649, 943, 1205
PspPPI RGGWCCY 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 599
PsyI GACNNNGTC 1 cut(s) 1012
PvuI CGATCG 1 cut(s) 1167
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
SacI GAGCTC 1 cut(s) 393
SacII CCGCGG 2 cut(s) 172, 786
SaqAI TTAA 1 cut(s) 323
Sau3AI GATC 9 cut(s) 64, 223, 307, 316, 360, 499, 599, 1164, 1168
Sau96I GGNCC 5 cut(s) 271, 642, 649, 943, 1205
ScaI AGTACT 1 cut(s) 580
SchI GAGTC 2 cut(s) 722, 943
SduI GDGCHC 2 cut(s) 393, 876
SfaNI GCATC 5 cut(s) 142, 198, 367, 798, 836
SfcI CTRYAG 1 cut(s) 282
Sfr303I CCGCGG 2 cut(s) 172, 786
SgrBI CCGCGG 2 cut(s) 172, 786
SinI GGWCC 3 cut(s) 271, 642, 1205
SmaI CCCGGG 2 cut(s) 653, 922
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 4 cut(s) 325, 348, 406, 1218
SspMI CTAG 1 cut(s) 113
SstI GAGCTC 1 cut(s) 393
StyI CCWWGG 2 cut(s) 645, 678
TaaI ACNGT 3 cut(s) 164, 1067, 1235
TaqI TCGA 5 cut(s) 498, 560, 1121, 1163, 1167
TasI AATT 4 cut(s) 325, 348, 406, 1218
TatI WGTACW 1 cut(s) 578
TfiI GAWTC 6 cut(s) 42, 479, 517, 815, 850, 966
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TscAI CASTG 2 cut(s) 775, 802
TseFI GTSAC 2 cut(s) 1111, 1142
TseI GCWGC 5 cut(s) 54, 57, 146, 433, 459
Tsp45I GTSAC 2 cut(s) 1111, 1142
TspDTI ATGAA 1 cut(s) 1007
TspGWI ACGGA 2 cut(s) 1071, 1139
TspMI CCCGGG 2 cut(s) 651, 920
TspRI CASTG 2 cut(s) 775, 802
Tth111I GACNNNGTC 1 cut(s) 1012
VpaK11BI GGWCC 3 cut(s) 271, 642, 1205
XmaI CCCGGG 2 cut(s) 651, 920
XspI CTAG 1 cut(s) 113
ZrmI AGTACT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.