Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000441.1

Orthogroup ID

OG0005089

Physical Location & Seq

Genomic Coordinates Forward (+)

412638 .. 413050

Gene Structure 413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000441.1_g000121.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atggaggctcaaggccacattctaagggccaccggccgaaaggacagccacagcaaggtttgcaccaccaaaggccccagggatcgcagtatcaggctcgtcgcccacaccgccattcaattctacgacatgcaggaccggcttggatacgaccagcctagcaagggcgtcgattggccgcgcatgacacgcagaactggggtggcgaagctggtgaataagaacagctcgaattttttgcaggtgaggatggtgttgaggccgaagttgtttatctttgtctgcctaaaattgcctctgatcgaagttgggctagaggccgaagttgtcggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

111

Amino Acids

12.59

Weight (kDa)

10.17

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30210 AT1G30210 AT4G18390 AT4G18390
fragaria_vesca	FvH4_3g05220 FvH4_3g05220
malus_domestica	MD05G1281100.v1.1 MD10G1259500.v1.1
prunus_persica	Prupe.3G099100_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1
pyrus_communis	pycom05g10530 pycom05g26120 pycom10g21590
rosa_chinensis	RchiOBHm_Chr5g0014491
rosa_laevigata	RLG00000032116
rosa_multiflora	Rmu_sc0000441.1_g000121 Rmu_sc0017039.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062060
rosa_rugosa	Rorug05G0018400 Rorug05G0018500
rosa_samantha	Rh5AG113800 Rh5BG110400 Rh5CG122300 Rh5DG109700
rosa_wichuraiana	Rw5G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
Acc36I	ACCTGC	1 cut(s)	232
AccII	CGCG	1 cut(s)	181
AciI	CCGC	2 cut(s)	111, 179
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	2 cut(s)	34, 176
AcsI	RAATTY	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	55, 164
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	211, 228
AluI	AGCT	2 cut(s)	211, 228
AlwI	GGATC	1 cut(s)	90
AoxI	GGCC	7 cut(s)	13, 27, 34, 73, 176, 260, 318
ApoI	RAATTY	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	3 cut(s)	27, 74, 136
AsuHPI	GGTGA	2 cut(s)	226, 256
AvaII	GGWCC	1 cut(s)	136
BccI	CCATC	1 cut(s)	244
BcgI	CGANNNNNNTGC	4 cut(s)	151, 185, 220, 254
BciT130I	CCWGG	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	140
BfaI	CTAG	2 cut(s)	159, 314
BfuAI	ACCTGC	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	27, 74, 136
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	79
BmrI	ACTGGG	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	77, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 164
Bse118I	RCCGGY	2 cut(s)	32, 138
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	2 cut(s)	77, 78
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	55, 164
BseNI	ACTGG	1 cut(s)	202
BseX3I	CGGCCG	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	181
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	7 cut(s)	15, 29, 36, 75, 178, 262, 320
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	33, 139
BslI	CCNNNNNNNGG	2 cut(s)	55, 164
BsnI	GGCC	7 cut(s)	15, 29, 36, 75, 178, 262, 320
Bsp143I	GATC	2 cut(s)	82, 300
BspACI	CCGC	2 cut(s)	111, 179
BspANI	GGCC	7 cut(s)	15, 29, 36, 75, 178, 262, 320
BspFNI	CGCG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	90
BsrFI	RCCGGY	2 cut(s)	32, 138
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	2 cut(s)	32, 138
BssECI	CCNNGG	2 cut(s)	77, 78
BssMI	GATC	2 cut(s)	82, 300
BssNI	GRCGYC	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	2 cut(s)	85, 303
BstMBI	GATC	2 cut(s)	82, 300
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 110, 139, 189
BstNI	CCWGG	1 cut(s)	79
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	77
BstUI	CGCG	1 cut(s)	181
BstZI	CGGCCG	1 cut(s)	34
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	7 cut(s)	15, 29, 36, 75, 178, 262, 320
BtsCI	GGATG	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	232
CfoI	GCGC	1 cut(s)	183
Cfr10I	RCCGGY	2 cut(s)	32, 138
Cfr13I	GGNCC	3 cut(s)	27, 74, 136
CseI	GACGC	1 cut(s)	157
CviAII	CATG	2 cut(s)	130, 184
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	84, 302
DpnII	GATC	2 cut(s)	82, 300
EaeI	YGGCCR	2 cut(s)	34, 176
EagI	CGGCCG	1 cut(s)	34
EclXI	CGGCCG	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	136
Eco52I	CGGCCG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	77
FaeI	CATG	2 cut(s)	133, 187
FaiI	YATR	2 cut(s)	131, 185
FatI	CATG	2 cut(s)	129, 183
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	2 cut(s)	159, 314
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	179
HaeIII	GGCC	7 cut(s)	15, 29, 36, 75, 178, 262, 320
HapII	CCGG	2 cut(s)	33, 139
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	133, 187
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HpaII	CCGG	2 cut(s)	33, 139
HphI	GGTGA	2 cut(s)	226, 256
Hpy188I	TCNGA	1 cut(s)	300
Hpy99I	CGWCG	2 cut(s)	104, 173
HpyCH4V	TGCA	3 cut(s)	63, 133, 241
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 110, 139, 189
HpyF3I	CTNAG	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	133, 187
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	82, 300
MaeI	CTAG	2 cut(s)	159, 314
MalI	GATC	2 cut(s)	84, 302
MboI	GATC	2 cut(s)	82, 300
MluCI	AATT	3 cut(s)	119, 232, 290
MnlI	CCTC	4 cut(s)	240, 252, 306, 310
MspI	CCGG	2 cut(s)	33, 139
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	4 cut(s)	60, 110, 139, 189
NdeII	GATC	2 cut(s)	82, 300
NlaIII	CATG	2 cut(s)	133, 187
NlaIV	GGNNCC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	133
PaqCI	CACCTGC	1 cut(s)	232
PasI	CCCWGGG	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	3 cut(s)	27, 74, 136
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	2 cut(s)	82, 300
Sau96I	GGNCC	3 cut(s)	27, 74, 136
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	4 cut(s)	60, 213, 230, 246
SinI	GGWCC	1 cut(s)	136
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	3 cut(s)	119, 232, 290
SsiI	CCGC	2 cut(s)	111, 179
SspMI	CTAG	2 cut(s)	159, 314
StyD4I	CCNGG	1 cut(s)	77
TaqI	TCGA	3 cut(s)	171, 230, 303
TasI	AATT	3 cut(s)	119, 232, 290
TauI	GCSGC	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	1 cut(s)	133
XspI	CTAG	2 cut(s)	159, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.