Prupe.4G083500_v2.0.a1
TCP Family

Transcription factor TCP2-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
4080520 .. 4089486
8967 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G083500.2

Sequence Viewer

Length: 1503 bp
ATGGAGGTGGAGGAGATTCAAGCCCAAGCCTGTAAGTTCCCAAGAATTGGAAATGGCAGCAGCAGAGCCACTAACCCAGCTGCCGACGACGAAGATCAAGACCCATCGTGCCTAGACCTCAAGAGGGCTGCCACTGCGGACGCCGGCAACCGCCTCCGCGGGTGGCACCACTCCCGCATCATCCGCGTCTCGAGGGCCTCCGGCGGCAAAGATCGGCACAGCAAGGTGTGGACTTCAAAGGGGCTCAGAGACCGGAGGGTACGGTTGTCTGTAACCACAGCCATTCAGTTCTATGATCTTCAAGATCGGCTGGGTTACGACCAACCCAGCAAAGCAGTGGAGTGGCTGATCAAAGCTGCCGCTGACGCCATAGCTGAGCTTCCATCTCTCAACAATTCCTTCCCTGACACTCCCAAGCAGCTCAGCGATGAGAAGAGGGCGAGTTGCGAGCATGGGTTTGATTCAGCTGAGGTTGAGCTCGAGGGGCACGGCCATGGCGACCACAATTATCATCACCATCAGAACCAGAACCAGAACCAGACTCAGAACCAAAGCCAGCACCTTTCTCTGTCCAAATCTGCTTGTTCTAGTAATTCCGAGACCAGCAAGGGATCCGGGCTATCTCTCTCCCGGTCCGAGATTCGGGTGAACCGGGTCAAGGCCCGGGAGCGTGCCCGGGAGAGAGCAGCCAAGGATAAGGAGAAGGAGAGCAACGAGTCAGCTTCACACATTGCTCACCACCACCAGCAAAACAGCAGCAACTTGAACAACTCCATTTCTCAAAGCGCTTCTTTCACCGAGCTTCTCACTGGTGGCATCGGTACCAACAGCAGCAACAACAACAACAGTCCAACCGCAGCTGCTCATCAGCAGCAGAACCACGGCGGCGGCGGCGAGCCCATTTTGTTCCACAAGGCAACAGCGGCAGGAGGAGGGGGACCGATGGATTACTTCAGTTCCGGACTTCTCGGGCTGTCCTCGTCGACCCGAACCCACCACTCGTCCGGGTTCTCGGGTCAAATCCAGTTGGGGATGAACTCCATTCCGCAGACAATGTCGGTTGTGTCCCCGTTCAGCGTGTCCGGGGATCATCATCACAACCACAACCCGGAGCTTCAGCATTTCTCGTTTGTTCCCGACCACCTCATCCCCGTTACGACGTCGTCGCAGCCGGGCAATGGCGGCGACTACAACCTCAACTTTTCGATCTCTTCTTCCGGCGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTTCCTCATCACAGTCTCTTTTGCCTCACCACCTTCAGAGGTTTTCTCCCATAGACGGATCATCCAATGTACCCTTCTTCATCGGAGCCGCGGCGGCTCCAACCATGGAGAACCACCATCACCACCACCACCACCATCAGCAGCACCAACAGCAGTTCCCAGCTGGGTTTGATCGCCGCTTGCAACATCCCTACGGCGACGGAAGCCGGCATTCAGACCACAAGGGAAAGGCAAAGAACTGA

Protein Analysis

501

Amino Acids

54.39

Weight (kDa)

7.57

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1252
AatII GACGTC 1 cut(s) 1163
Acc65I GGTACC 1 cut(s) 821
AccB1I GGYRCC 2 cut(s) 165, 821
AccB7I CCANNNNNTGG 1 cut(s) 47
AccI GTMKAC 1 cut(s) 983
AccII CGCG 3 cut(s) 159, 186, 1352
AccIII TCCGGA 1 cut(s) 959
AclWI GGATC 4 cut(s) 606, 619, 1095, 1327
AcoI YGGCCR 1 cut(s) 490
AcuI CTGAAG 4 cut(s) 937, 1100, 1235, 1280
AcyI GRCGYC 3 cut(s) 141, 366, 1160
AfaI GTAC 3 cut(s) 261, 823, 1332
AfeI AGCGCT 1 cut(s) 787
AfiI CCNNNNNNNGG 7 cut(s) 47, 124, 642, 658, 1108, 1178, 1316
AgsI TTSAA 5 cut(s) 20, 237, 302, 766, 1237
AjuI GAANNNNNNNTTGG 2 cut(s) 1319, 1351
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 4 cut(s) 193, 243, 593, 1281
AlwI GGATC 4 cut(s) 606, 619, 1095, 1327
Ama87I CYCGRG 6 cut(s) 190, 479, 663, 675, 968, 1012
Aor13HI TCCGGA 1 cut(s) 959
Aor51HI AGCGCT 1 cut(s) 787
AoxI GGCC 4 cut(s) 195, 490, 660, 1222
Asp718I GGTACC 1 cut(s) 821
AspLEI GCGC 1 cut(s) 788
AspS9I GGNCC 5 cut(s) 195, 633, 661, 938, 1245
AsuHPI GGTGA 6 cut(s) 506, 658, 728, 787, 1280, 1373
AvaI CYCGRG 6 cut(s) 190, 479, 663, 675, 968, 1012
AvaII GGWCC 3 cut(s) 633, 938, 1245
BaeGI GKGCMC 2 cut(s) 489, 676
BaeI ACNNNNGTAYC 2 cut(s) 251, 284
BamHI GGATCC 1 cut(s) 611
BanI GGYRCC 2 cut(s) 165, 821
BanII GRGCYC 3 cut(s) 246, 480, 900
Bbv12I GWGCWC 1 cut(s) 480
BbvCI CCTCAGC 1 cut(s) 468
BccI CCATC 6 cut(s) 112, 391, 525, 937, 1386, 1404
BceAI ACGGC 3 cut(s) 505, 898, 1471
BclI TGATCA 1 cut(s) 348
BcoDI GTCTC 4 cut(s) 193, 243, 593, 1281
BfaI CTAG 2 cut(s) 113, 588
BfoI RGCGCY 1 cut(s) 789
BglI GCCNNNNNGGC 1 cut(s) 1355
BlpI GCTNAGC 2 cut(s) 375, 422
Bme18I GGWCC 3 cut(s) 633, 938, 1245
BmeT110I CYCGRG 6 cut(s) 190, 479, 663, 675, 968, 1012
BmgT120I GGNCC 5 cut(s) 195, 633, 661, 938, 1245
BmiI GGNNCC 8 cut(s) 167, 613, 823, 939, 1246, 1247, 1348, 1359
BmsI GCATC 2 cut(s) 186, 825
BplI GAGNNNNNCTC 2 cut(s) 1291, 1323
Bpu10I CCTNAGC 1 cut(s) 468
Bpu1102I GCTNAGC 2 cut(s) 375, 422
BpuEI CTTGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 1092
BsaHI GRCGYC 3 cut(s) 141, 366, 1160
BsaI GGTCTC 2 cut(s) 243, 593
BsaJI CCNNGG 9 cut(s) 157, 493, 663, 675, 690, 880, 1083, 1350, 1365
BsaWI WCCGGW 2 cut(s) 252, 959
Bsc4I CCNNNNNNNGG 7 cut(s) 47, 124, 642, 658, 1108, 1178, 1316
Bse118I RCCGGY 2 cut(s) 143, 1467
Bse1I ACTGG 2 cut(s) 814, 1024
Bse3DI GCAATG 2 cut(s) 729, 1183
Bse8I GATNNNNATC 1 cut(s) 1092
BseAI TCCGGA 1 cut(s) 959
BseDI CCNNGG 9 cut(s) 157, 493, 663, 675, 690, 880, 1083, 1350, 1365
BseGI GGATG 5 cut(s) 180, 1038, 1146, 1322, 1447
BseJI GATNNNNATC 1 cut(s) 1092
BseLI CCNNNNNNNGG 7 cut(s) 47, 124, 642, 658, 1108, 1178, 1316
BseMI GCAATG 2 cut(s) 729, 1183
BseMII CTCAG 5 cut(s) 259, 366, 436, 459, 557
BseNI ACTGG 2 cut(s) 814, 1024
BseRI GAGGAG 2 cut(s) 26, 945
BseSI GKGCMC 2 cut(s) 489, 676
BseYI CCCAGC 5 cut(s) 76, 310, 326, 1420, 1424
Bsh1236I CGCG 3 cut(s) 159, 186, 1352
BshFI GGCC 4 cut(s) 197, 492, 662, 1224
BshNI GGYRCC 2 cut(s) 165, 821
BsiHKAI GWGCWC 1 cut(s) 480
BsiHKCI CYCGRG 6 cut(s) 190, 479, 663, 675, 968, 1012
BslFI GGGAC 3 cut(s) 951, 1051, 1258
BslI CCNNNNNNNGG 7 cut(s) 47, 124, 642, 658, 1108, 1178, 1316
BsmAI GTCTC 4 cut(s) 193, 243, 593, 1281
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 3 cut(s) 951, 1051, 1258
BsmI GAATGC 1 cut(s) 1471
BsnI GGCC 4 cut(s) 197, 492, 662, 1224
Bso31I GGTCTC 2 cut(s) 243, 593
BsoBI CYCGRG 6 cut(s) 190, 479, 663, 675, 968, 1012
Bsp1286I GDGCHC 5 cut(s) 246, 480, 489, 676, 900
Bsp13I TCCGGA 1 cut(s) 959
Bsp1720I GCTNAGC 2 cut(s) 375, 422
Bsp19I CCATGG 2 cut(s) 493, 1365
BspANI GGCC 4 cut(s) 197, 492, 662, 1224
BspCNI CTCAG 5 cut(s) 258, 367, 435, 460, 556
BspEI TCCGGA 1 cut(s) 959
BspFNI CGCG 3 cut(s) 159, 186, 1352
BspLI GGNNCC 8 cut(s) 167, 613, 823, 939, 1246, 1247, 1348, 1359
BspPI GGATC 4 cut(s) 606, 619, 1095, 1327
BspT107I GGYRCC 2 cut(s) 165, 821
BspTNI GGTCTC 2 cut(s) 243, 593
BsrDI GCAATG 2 cut(s) 729, 1183
BsrFI RCCGGY 2 cut(s) 143, 1467
BsrI ACTGG 2 cut(s) 814, 1024
BssAI RCCGGY 2 cut(s) 143, 1467
BssECI CCNNGG 9 cut(s) 157, 493, 663, 675, 690, 880, 1083, 1350, 1365
BssNI GRCGYC 3 cut(s) 141, 366, 1160
BssT1I CCWWGG 3 cut(s) 493, 690, 1365
Bst4CI ACNGT 3 cut(s) 264, 848, 1275
Bst6I CTCTTC 2 cut(s) 428, 1216
BstACI GRCGYC 3 cut(s) 141, 366, 1160
BstC8I GCNNGC 7 cut(s) 145, 449, 557, 672, 896, 1442, 1469
BstDEI CTNAG 5 cut(s) 245, 375, 422, 468, 543
BstDSI CCRYGG 5 cut(s) 157, 493, 880, 1350, 1365
BstF5I GGATG 5 cut(s) 180, 1038, 1146, 1322, 1447
BstFNI CGCG 3 cut(s) 159, 186, 1352
BstH2I RGCGCY 1 cut(s) 789
BstHHI GCGC 1 cut(s) 788
BstMAI GTCTC 4 cut(s) 193, 243, 593, 1281
BstSLI GKGCMC 2 cut(s) 489, 676
BstUI CGCG 3 cut(s) 159, 186, 1352
BstX2I RGATCY 1 cut(s) 611
BstYI RGATCY 1 cut(s) 611
BsuRI GGCC 4 cut(s) 197, 492, 662, 1224
BtgI CCRYGG 5 cut(s) 157, 493, 880, 1350, 1365
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 5 cut(s) 180, 1038, 1146, 1322, 1447
BtsI GCAGTG 2 cut(s) 132, 342
BtsIMutI CAGTG 3 cut(s) 132, 342, 807
Cac8I GCNNGC 7 cut(s) 145, 449, 557, 672, 896, 1442, 1469
CfoI GCGC 1 cut(s) 788
Cfr10I RCCGGY 2 cut(s) 143, 1467
Cfr13I GGNCC 5 cut(s) 195, 633, 661, 938, 1245
Cfr42I CCGCGG 2 cut(s) 160, 1353
Cfr9I CCCGGG 2 cut(s) 663, 675
CpoI CGGWCCG 1 cut(s) 633
CseI GACGC 3 cut(s) 149, 175, 374
Csp6I GTAC 3 cut(s) 260, 822, 1331
CspI CGGWCCG 1 cut(s) 633
CviAII CATG 3 cut(s) 452, 494, 1366
CviQI GTAC 3 cut(s) 260, 822, 1331
DdeI CTNAG 5 cut(s) 245, 375, 422, 468, 543
DrdI GACNNNNNNGTC 1 cut(s) 1252
DseDI GACNNNNNNGTC 1 cut(s) 1252
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 428, 1216
EarI CTCTTC 2 cut(s) 428, 1216
Ecl136II GAGCTC 1 cut(s) 478
Eco130I CCWWGG 3 cut(s) 493, 690, 1365
Eco24I GRGCYC 3 cut(s) 246, 480, 900
Eco31I GGTCTC 2 cut(s) 243, 593
Eco47I GGWCC 3 cut(s) 633, 938, 1245
Eco47III AGCGCT 1 cut(s) 787
Eco53kI GAGCTC 1 cut(s) 478
Eco57I CTGAAG 4 cut(s) 937, 1100, 1235, 1280
Eco88I CYCGRG 6 cut(s) 190, 479, 663, 675, 968, 1012
EcoICRI GAGCTC 1 cut(s) 478
EcoO109I RGGNCCY 2 cut(s) 195, 1245
EcoT14I CCWWGG 3 cut(s) 493, 690, 1365
EcoT38I GRGCYC 3 cut(s) 246, 480, 900
ErhI CCWWGG 3 cut(s) 493, 690, 1365
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 3 cut(s) 455, 497, 1369
FaiI YATR 6 cut(s) 294, 371, 453, 495, 1313, 1367
FalI AAGNNNNNCTT 2 cut(s) 775, 807
FaqI GGGAC 3 cut(s) 951, 1051, 1258
FatI CATG 3 cut(s) 451, 493, 1365
FauI CCCGC 2 cut(s) 152, 182
FbaI TGATCA 1 cut(s) 348
FblI GTMKAC 1 cut(s) 983
FokI GGATG 5 cut(s) 167, 1045, 1133, 1309, 1434
FriOI GRGCYC 3 cut(s) 246, 480, 900
FspBI CTAG 2 cut(s) 113, 588
GlaI GCGC 1 cut(s) 787
GsaI CCCAGC 5 cut(s) 80, 314, 330, 1424, 1428
HaeII RGCGCY 1 cut(s) 789
HaeIII GGCC 4 cut(s) 197, 492, 662, 1224
HgaI GACGC 3 cut(s) 149, 175, 374
HhaI GCGC 1 cut(s) 788
Hin1I GRCGYC 3 cut(s) 141, 366, 1160
Hin1II CATG 3 cut(s) 455, 497, 1369
Hin6I GCGC 1 cut(s) 786
HinP1I GCGC 1 cut(s) 786
HincII GTYRAC 1 cut(s) 984
HindII GTYRAC 1 cut(s) 984
HinfI GANTC 5 cut(s) 16, 461, 541, 640, 716
HphI GGTGA 6 cut(s) 506, 658, 728, 787, 1280, 1373
Hpy166II GTNNAC 3 cut(s) 231, 649, 984
Hpy188I TCNGA 8 cut(s) 248, 522, 546, 598, 637, 1299, 1346, 1477
Hpy188III TCNNGA 6 cut(s) 98, 121, 190, 302, 960, 1136
Hpy8I GTNNAC 3 cut(s) 231, 649, 984
Hpy99I CGWCG 7 cut(s) 89, 92, 985, 1162, 1165, 1168, 1463
HpyAV CCTTC 5 cut(s) 409, 697, 1259, 1304, 1345
HpyCH4III ACNGT 3 cut(s) 264, 848, 1275
HpyCH4IV ACGT 1 cut(s) 1160
HpyCH4V TGCA 1 cut(s) 1444
HpyF3I CTNAG 5 cut(s) 245, 375, 422, 468, 543
HpySE526I ACGT 1 cut(s) 1160
Hsp92I GRCGYC 3 cut(s) 141, 366, 1160
Hsp92II CATG 3 cut(s) 455, 497, 1369
HspAI GCGC 1 cut(s) 786
KflI GGGWCCC 1 cut(s) 1245
Kpn2I TCCGGA 1 cut(s) 959
KpnI GGTACC 1 cut(s) 825
KroI GCCGGC 2 cut(s) 143, 1467
KroNI GCCGGC 2 cut(s) 145, 1469
Ksp22I TGATCA 1 cut(s) 348
KspI CCGCGG 2 cut(s) 160, 1353
LmnI GCTCC 4 cut(s) 667, 1111, 1346, 1363
LweI GCATC 2 cut(s) 186, 825
MaeI CTAG 2 cut(s) 113, 588
MaeII ACGT 1 cut(s) 1160
MaeIII GTNAC 3 cut(s) 271, 314, 1153
MboII GAAGA 7 cut(s) 104, 290, 445, 1203, 1206, 1254, 1330
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 5 cut(s) 246, 480, 489, 676, 900
MluCI AATT 5 cut(s) 45, 394, 505, 592, 1258
MlyI GAGTC 2 cut(s) 535, 725
MmeI TCCRAC 2 cut(s) 875, 1385
MroI TCCGGA 1 cut(s) 959
MroNI GCCGGC 2 cut(s) 143, 1467
MslI CAYNNNNRTG 1 cut(s) 492
MspA1I CMGCKG 8 cut(s) 80, 159, 362, 467, 860, 923, 1352, 1424
Mva1269I GAATGC 1 cut(s) 1471
MvnI CGCG 3 cut(s) 159, 186, 1352
NaeI GCCGGC 2 cut(s) 145, 1469
NcoI CCATGG 2 cut(s) 493, 1365
NgoMIV GCCGGC 2 cut(s) 143, 1467
NlaIII CATG 3 cut(s) 455, 497, 1369
NlaIV GGNNCC 8 cut(s) 167, 613, 823, 939, 1246, 1247, 1348, 1359
PaeR7I CTCGAG 2 cut(s) 190, 479
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PctI GAATGC 1 cut(s) 1471
PdiI GCCGGC 2 cut(s) 145, 1469
PfeI GAWTC 3 cut(s) 16, 461, 640
PflFI GACNNNGTC 2 cut(s) 1054, 1162
PflMI CCANNNNNTGG 1 cut(s) 47
PleI GAGTC 2 cut(s) 535, 724
PpsI GAGTC 2 cut(s) 535, 724
PpuMI RGGWCCY 1 cut(s) 1245
Psp124BI GAGCTC 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 1245
PspFI CCCAGC 5 cut(s) 76, 310, 326, 1420, 1424
PspN4I GGNNCC 8 cut(s) 167, 613, 823, 939, 1246, 1247, 1348, 1359
PspPI GGNCC 5 cut(s) 195, 633, 661, 938, 1245
PspPPI RGGWCCY 1 cut(s) 1245
PspXI VCTCGAGB 1 cut(s) 479
PsuI RGATCY 1 cut(s) 611
PsyI GACNNNGTC 2 cut(s) 1054, 1162
PvuII CAGCTG 4 cut(s) 80, 467, 860, 1424
RsaI GTAC 3 cut(s) 261, 823, 1332
RsaNI GTAC 3 cut(s) 260, 822, 1331
RseI CAYNNNNRTG 1 cut(s) 492
Rsr2I CGGWCCG 1 cut(s) 633
RsrII CGGWCCG 1 cut(s) 633
SacI GAGCTC 1 cut(s) 480
SacII CCGCGG 2 cut(s) 160, 1353
SalI GTCGAC 1 cut(s) 982
Sau96I GGNCC 5 cut(s) 195, 633, 661, 938, 1245
SchI GAGTC 2 cut(s) 535, 725
SduI GDGCHC 5 cut(s) 246, 480, 489, 676, 900
SfaNI GCATC 2 cut(s) 186, 825
Sfr274I CTCGAG 2 cut(s) 190, 479
Sfr303I CCGCGG 2 cut(s) 160, 1353
SgrBI CCGCGG 2 cut(s) 160, 1353
SinI GGWCC 3 cut(s) 633, 938, 1245
SlaI CTCGAG 2 cut(s) 190, 479
SmaI CCCGGG 2 cut(s) 665, 677
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 3 cut(s) 119, 190, 479
SmoI CTYRAG 3 cut(s) 119, 190, 479
Sse9I AATT 5 cut(s) 45, 394, 505, 592, 1258
SspMI CTAG 2 cut(s) 113, 588
SstI GAGCTC 1 cut(s) 480
StyI CCWWGG 3 cut(s) 493, 690, 1365
TaaI ACNGT 3 cut(s) 264, 848, 1275
TaiI ACGT 1 cut(s) 1163
TaqI TCGA 4 cut(s) 191, 480, 983, 1205
TaqII GACCGA 1 cut(s) 955
TasI AATT 5 cut(s) 45, 394, 505, 592, 1258
TfiI GAWTC 3 cut(s) 16, 461, 640
TscAI CASTG 3 cut(s) 139, 342, 814
TspDTI ATGAA 2 cut(s) 1049, 1330
TspGWI ACGGA 2 cut(s) 1332, 1476
TspMI CCCGGG 2 cut(s) 663, 675
TspRI CASTG 3 cut(s) 139, 342, 814
Tth111I GACNNNGTC 2 cut(s) 1054, 1162
Van91I CCANNNNNTGG 1 cut(s) 47
VpaK11BI GGWCC 3 cut(s) 633, 938, 1245
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XhoI CTCGAG 2 cut(s) 190, 479
XmaI CCCGGG 2 cut(s) 663, 675
XmiI GTMKAC 1 cut(s) 983
XspI CTAG 2 cut(s) 113, 588
ZraI GACGTC 1 cut(s) 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.