Rh5AG113800
TCP Family

Transcription factor TCP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005089
Physical Location & Seq
Reverse (-)
10477422 .. 10484179
6758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG113800.1

Sequence Viewer

Length: 1329 bp
ATGGAGGTGGAGGAGATTCAAGCTCAGCAGCCCTGCAAGTTCCCAAGAACTGGAAATGGCGGTAGAGGAAGCACTATAGTCAAGAGCCCAGATGAGGAAGACGGCGGCGGCGGTCGGGAGCTCAAGAGAGCTGGCGGGGGAGACGCGGGCACTAACCGGCTTAACGGGTGGCACCACTCTCGAATCATCAGGGTTTCGAGAGCCTCCGGAGGGAAAGATCGGCACAGCAAGGTGTGGACTTCAAAGGGGTTGAGGGACAGGAGGGTCCGGCTGTCGGTTACAACCGCTATTCAATTCTACGATCTTCAAGATCGGCTGGGTTATGACCAACCCAGTAAGGCAGTGGAGTGGCTGATCAAAGCTGCGGCTGACGCCATCTCGGAGCTTCCTTCTCTGAACAGCTCGTTCCCCGACACTCCGAAGCAGCTGAGCGATGAGAAGAGGGCGAGCAGCGAGCGCGGGTTCGATTCCGTTGAGCTTGATGTAGATGGTGACCCCAATTATCACCATCAAGTGCAGAATCATCATCAGCTTTGCATGTCGAAATCTGCTTGCAGTAGTACTTCTGAGACGAGCAAGGGATCGGGGGGGCTGTCTCTGTCCCGGTCGGAGATGCGGGTGAACCGGGATAAGGCCAGGGAGCGAGCCCGGGAGAGAGCAGCCAAGGAGAAGGAGAAAGACAGCAACAGCAACAACGACGAGTCCTCCCGCATTGCACAGGCTATTTCTCAAAGTGCATCGTTTACTGAGCTTCTCACCGGCGGAATCGGAAACAACAGGAACAACAACAGTCCCAACGGCGAGCCCATTTTGTTCCACAAGGCAGCAGCACCGCCGATGGAATACTTCGGGTCCAGTCTTCTGGGACTTTCCTCCACCCCAACCCGAAACCACCATCAATTCCACCTGGGGAATTCGCTCCCCCAGACAATGTTCAGCATCTCCGGTGACCACAACCACAGCCACCCGGAGATGCAGCATTTCTCGTTTGTTCCCGACTACATCCCTGTCGTCTCGGCAGCGGCCAACGGCGGCGAATACAACCTCAACTTCTCCATGTCTTCTTCCGGCGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCATCATCATCACCATCACCATCACCTTCTCTTTTGCCTCACCTCCAGAGGTTCTCTCCCATGGACGGATCGTCCAGTGTACCTTTCTTCATCGGAGCTGCCGCCGCAGCCGCAGCTCCAACCATGGAGAATCACCAGCACCACCAGTTCCCAGCTGGATTGCAGCTCTACGGCGACGGAAGCCGGCATTCAGACCACAAGGGAAAAGCAAAGAACTGA

Protein Analysis

442

Amino Acids

47.84

Weight (kDa)

8.35

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 70 - 225 9.5e-44 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 263, 1102
AccB1I GGYRCC 1 cut(s) 171
AccB7I CCANNNNNTGG 1 cut(s) 50
AccII CGCG 2 cut(s) 146, 459
AccIII TCCGGA 1 cut(s) 206
AclWI GGATC 2 cut(s) 589, 1186
AcoI YGGCCR 1 cut(s) 1023
AcsI RAATTY 1 cut(s) 913
AcuI CTGAAG 1 cut(s) 1085
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 2 cut(s) 562, 1191
AfiI CCNNNNNNNGG 6 cut(s) 50, 94, 210, 274, 631, 1175
AgsI TTSAA 5 cut(s) 20, 243, 293, 308, 1087
AhdI GACNNNNNGTC 1 cut(s) 1180
AjnI CCWGG 2 cut(s) 635, 906
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 4 cut(s) 135, 563, 600, 1018
AlwI GGATC 2 cut(s) 589, 1186
Ama87I CYCGRG 1 cut(s) 648
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 3 cut(s) 633, 1023, 1072
ApoI RAATTY 1 cut(s) 913
AspLEI GCGC 1 cut(s) 459
AspS9I GGNCC 3 cut(s) 265, 852, 1095
AsuC2I CCSGG 5 cut(s) 604, 626, 649, 650, 968
AvaI CYCGRG 1 cut(s) 648
AvaII GGWCC 3 cut(s) 265, 852, 1095
BaeGI GKGCMC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 171
BanII GRGCYC 4 cut(s) 89, 123, 649, 807
BbsI GAAGAC 3 cut(s) 105, 851, 1053
Bbv12I GWGCWC 1 cut(s) 123
BccI CCATC 7 cut(s) 383, 482, 516, 832, 903, 1132, 1138
BceAI ACGGC 4 cut(s) 118, 814, 1045, 1297
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 2 cut(s) 637, 908
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 5 cut(s) 604, 626, 649, 650, 968
BcoDI GTCTC 4 cut(s) 135, 563, 600, 1018
BfmI CTRYAG 1 cut(s) 75
BlpI GCTNAGC 2 cut(s) 24, 428
BmcAI AGTACT 1 cut(s) 562
Bme1390I CCNGG 7 cut(s) 604, 626, 637, 649, 650, 908, 968
Bme18I GGWCC 3 cut(s) 265, 852, 1095
BmeRI GACNNNNNGTC 1 cut(s) 1180
BmeT110I CYCGRG 1 cut(s) 648
BmgT120I GGNCC 3 cut(s) 265, 852, 1095
BmiI GGNNCC 5 cut(s) 173, 266, 853, 1096, 1097
BmrFI CCNGG 7 cut(s) 604, 626, 637, 649, 650, 908, 968
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 4 cut(s) 603, 746, 948, 963
BmuI ACTGGG 1 cut(s) 327
BpiI GAAGAC 3 cut(s) 105, 851, 1053
BplI GAGNNNNNCTC 2 cut(s) 1150, 1182
BpmI CTGGAG 1 cut(s) 1139
Bpu1102I GCTNAGC 2 cut(s) 24, 428
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 5 cut(s) 604, 626, 649, 650, 968
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 6 cut(s) 636, 648, 663, 907, 1170, 1233
BsaWI WCCGGW 2 cut(s) 206, 944
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 94, 210, 274, 631, 1175
Bse118I RCCGGY 3 cut(s) 156, 758, 1293
Bse1I ACTGG 5 cut(s) 55, 333, 855, 1185, 1255
Bse3DI GCAATG 1 cut(s) 711
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 2 cut(s) 637, 908
BseDI CCNNGG 6 cut(s) 636, 648, 663, 907, 1170, 1233
BseGI GGATG 1 cut(s) 1002
BseLI CCNNNNNNNGG 6 cut(s) 50, 94, 210, 274, 631, 1175
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 4 cut(s) 38, 419, 558, 738
BseNI ACTGG 5 cut(s) 55, 333, 855, 1185, 1255
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 152
BseYI CCCAGC 2 cut(s) 316, 1261
BsgI GTGCAG 1 cut(s) 536
Bsh1236I CGCG 2 cut(s) 146, 459
Bsh1285I CGRYCG 2 cut(s) 115, 608
BshFI GGCC 3 cut(s) 635, 1025, 1074
BshNI GGYRCC 1 cut(s) 171
BsiEI CGRYCG 2 cut(s) 115, 608
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 648
BslFI GGGAC 5 cut(s) 269, 586, 777, 879, 1108
BslI CCNNNNNNNGG 6 cut(s) 50, 94, 210, 274, 631, 1175
BsmAI GTCTC 4 cut(s) 135, 563, 600, 1018
BsmBI CGTCTC 3 cut(s) 135, 563, 1018
BsmFI GGGAC 5 cut(s) 269, 586, 777, 879, 1108
BsmI GAATGC 1 cut(s) 1297
BsnI GGCC 3 cut(s) 635, 1025, 1074
BsoBI CYCGRG 1 cut(s) 648
Bsp1286I GDGCHC 5 cut(s) 89, 123, 152, 649, 807
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 6 cut(s) 217, 301, 310, 354, 581, 1178
Bsp1720I GCTNAGC 2 cut(s) 24, 428
Bsp19I CCATGG 2 cut(s) 1170, 1233
BspANI GGCC 3 cut(s) 635, 1025, 1074
BspCNI CTCAG 4 cut(s) 37, 420, 559, 739
BspEI TCCGGA 1 cut(s) 206
BspFNI CGCG 2 cut(s) 146, 459
BspLI GGNNCC 5 cut(s) 173, 266, 853, 1096, 1097
BspPI GGATC 2 cut(s) 589, 1186
BspT107I GGYRCC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 3 cut(s) 156, 758, 1293
BsrI ACTGG 5 cut(s) 55, 333, 855, 1185, 1255
BssAI RCCGGY 3 cut(s) 156, 758, 1293
BssECI CCNNGG 6 cut(s) 636, 648, 663, 907, 1170, 1233
BssMI GATC 6 cut(s) 217, 301, 310, 354, 581, 1178
BssNI GRCGYC 1 cut(s) 372
BssT1I CCWWGG 3 cut(s) 663, 1170, 1233
Bst2UI CCWGG 2 cut(s) 637, 908
Bst4CI ACNGT 1 cut(s) 791
Bst6I CTCTTC 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 8 cut(s) 133, 148, 448, 455, 553, 645, 803, 1295
BstDEI CTNAG 4 cut(s) 24, 428, 567, 747
BstDSI CCRYGG 2 cut(s) 1170, 1233
BstEII GGTNACC 2 cut(s) 491, 947
BstF5I GGATG 1 cut(s) 1002
BstFNI CGCG 2 cut(s) 146, 459
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 6 cut(s) 220, 304, 313, 357, 584, 1181
BstMAI GTCTC 4 cut(s) 135, 563, 600, 1018
BstMBI GATC 6 cut(s) 217, 301, 310, 354, 581, 1178
BstMCI CGRYCG 2 cut(s) 115, 608
BstMWI GCNNNNNNNGC 7 cut(s) 371, 456, 1214, 1217, 1220, 1223, 1290
BstNI CCWGG 2 cut(s) 637, 908
BstNSI RCATGY 1 cut(s) 541
BstPI GGTNACC 2 cut(s) 491, 947
BstSCI CCNGG 7 cut(s) 602, 624, 635, 647, 648, 906, 966
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 152
BstUI CGCG 2 cut(s) 146, 459
BstV2I GAAGAC 3 cut(s) 105, 851, 1053
BstXI CCANNNNNNTGG 1 cut(s) 862
BsuRI GGCC 3 cut(s) 635, 1025, 1074
BtgI CCRYGG 2 cut(s) 1170, 1233
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 1002
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 2 cut(s) 348, 1192
Cac8I GCNNGC 8 cut(s) 133, 148, 448, 455, 553, 645, 803, 1295
CfoI GCGC 1 cut(s) 459
Cfr10I RCCGGY 3 cut(s) 156, 758, 1293
Cfr13I GGNCC 3 cut(s) 265, 852, 1095
Cfr9I CCCGGG 1 cut(s) 648
CseI GACGC 2 cut(s) 152, 380
Csp6I GTAC 2 cut(s) 561, 1190
CviAII CATG 4 cut(s) 538, 1057, 1171, 1234
CviQI GTAC 2 cut(s) 561, 1190
DdeI CTNAG 4 cut(s) 24, 428, 567, 747
DpnI GATC 6 cut(s) 219, 303, 312, 356, 583, 1180
DpnII GATC 6 cut(s) 217, 301, 310, 354, 581, 1178
DrdI GACNNNNNNGTC 2 cut(s) 263, 1102
DriI GACNNNNNGTC 1 cut(s) 1180
DseDI GACNNNNNNGTC 2 cut(s) 263, 1102
EaeI YGGCCR 1 cut(s) 1023
Eam1104I CTCTTC 1 cut(s) 434
Eam1105I GACNNNNNGTC 1 cut(s) 1180
EarI CTCTTC 1 cut(s) 434
EciI GGCGGA 1 cut(s) 777
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 3 cut(s) 663, 1170, 1233
Eco24I GRGCYC 4 cut(s) 89, 123, 649, 807
Eco47I GGWCC 3 cut(s) 265, 852, 1095
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 1085
Eco88I CYCGRG 1 cut(s) 648
Eco91I GGTNACC 2 cut(s) 491, 947
EcoICRI GAGCTC 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 1095
EcoO65I GGTNACC 2 cut(s) 491, 947
EcoRI GAATTC 1 cut(s) 913
EcoRII CCWGG 2 cut(s) 635, 906
EcoT14I CCWWGG 3 cut(s) 663, 1170, 1233
EcoT38I GRGCYC 4 cut(s) 89, 123, 649, 807
ErhI CCWWGG 3 cut(s) 663, 1170, 1233
Esp3I CGTCTC 3 cut(s) 135, 563, 1018
FaeI CATG 4 cut(s) 541, 1060, 1174, 1237
FaiI YATR 6 cut(s) 77, 324, 539, 1058, 1172, 1235
FaqI GGGAC 5 cut(s) 269, 586, 777, 879, 1108
FatI CATG 4 cut(s) 537, 1056, 1170, 1233
FauI CCCGC 5 cut(s) 128, 139, 452, 609, 716
FbaI TGATCA 1 cut(s) 354
FokI GGATG 1 cut(s) 989
FriOI GRGCYC 4 cut(s) 89, 123, 649, 807
GlaI GCGC 1 cut(s) 458
GsaI CCCAGC 2 cut(s) 320, 1265
GsuI CTGGAG 1 cut(s) 1139
HaeIII GGCC 3 cut(s) 635, 1025, 1074
HgaI GACGC 2 cut(s) 152, 380
HhaI GCGC 1 cut(s) 459
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 4 cut(s) 541, 1060, 1174, 1237
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HinfI GANTC 7 cut(s) 16, 183, 467, 520, 701, 765, 1240
Hpy166II GTNNAC 4 cut(s) 237, 622, 744, 1190
Hpy188I TCNGA 8 cut(s) 382, 396, 420, 568, 610, 770, 1205, 1303
Hpy188III TCNNGA 9 cut(s) 82, 116, 124, 180, 198, 207, 308, 995, 1156
Hpy8I GTNNAC 4 cut(s) 237, 622, 744, 1190
Hpy99I CGWCG 2 cut(s) 701, 1289
HpyAV CCTTC 4 cut(s) 399, 664, 1109, 1146
HpyCH4III ACNGT 1 cut(s) 791
HpyCH4V TGCA 8 cut(s) 36, 517, 537, 555, 716, 737, 976, 1273
HpyF10VI GCNNNNNNNGC 7 cut(s) 371, 456, 1214, 1217, 1220, 1223, 1290
HpyF3I CTNAG 4 cut(s) 24, 428, 567, 747
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 4 cut(s) 541, 1060, 1174, 1237
HspAI GCGC 1 cut(s) 457
KflI GGGWCCC 1 cut(s) 1095
Kpn2I TCCGGA 1 cut(s) 206
KroI GCCGGC 1 cut(s) 1293
KroNI GCCGGC 1 cut(s) 1295
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 6 cut(s) 217, 301, 310, 354, 581, 1178
LmnI GCTCC 6 cut(s) 118, 382, 640, 924, 1205, 1231
LweI GCATC 4 cut(s) 603, 746, 948, 963
MaeIII GTNAC 3 cut(s) 277, 491, 947
MalI GATC 6 cut(s) 219, 303, 312, 356, 583, 1180
MboI GATC 6 cut(s) 217, 301, 310, 354, 581, 1178
MboII GAAGA 7 cut(s) 110, 296, 451, 851, 1053, 1056, 1189
MhlI GDGCHC 5 cut(s) 89, 123, 152, 649, 807
MluCI AATT 5 cut(s) 293, 499, 899, 913, 1108
MlyI GAGTC 1 cut(s) 710
MmeI TCCRAC 2 cut(s) 588, 1253
MroI TCCGGA 1 cut(s) 206
MroNI GCCGGC 1 cut(s) 1293
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 3 cut(s) 427, 1022, 1265
MspR9I CCNGG 7 cut(s) 604, 626, 637, 649, 650, 908, 968
Mva1269I GAATGC 1 cut(s) 1297
MvaI CCWGG 2 cut(s) 637, 908
MvnI CGCG 2 cut(s) 146, 459
MwoI GCNNNNNNNGC 7 cut(s) 371, 456, 1214, 1217, 1220, 1223, 1290
NaeI GCCGGC 1 cut(s) 1295
NciI CCSGG 5 cut(s) 604, 626, 649, 650, 968
NcoI CCATGG 2 cut(s) 1170, 1233
NdeII GATC 6 cut(s) 217, 301, 310, 354, 581, 1178
NgoMIV GCCGGC 1 cut(s) 1293
NlaIII CATG 4 cut(s) 541, 1060, 1174, 1237
NlaIV GGNNCC 5 cut(s) 173, 266, 853, 1096, 1097
NmeAIII GCCGAG 1 cut(s) 995
NmuCI GTSAC 2 cut(s) 491, 947
NspI RCATGY 1 cut(s) 541
PctI GAATGC 1 cut(s) 1297
PdiI GCCGGC 1 cut(s) 1295
PfeI GAWTC 6 cut(s) 16, 183, 467, 520, 765, 1240
PflMI CCANNNNNTGG 1 cut(s) 50
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PpuMI RGGWCCY 1 cut(s) 1095
Psp124BI GAGCTC 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 1095
Psp6I CCWGG 2 cut(s) 635, 906
PspEI GGTNACC 2 cut(s) 491, 947
PspFI CCCAGC 2 cut(s) 316, 1261
PspGI CCWGG 2 cut(s) 635, 906
PspN4I GGNNCC 5 cut(s) 173, 266, 853, 1096, 1097
PspPI GGNCC 3 cut(s) 265, 852, 1095
PspPPI RGGWCCY 1 cut(s) 1095
PvuII CAGCTG 2 cut(s) 427, 1265
RsaI GTAC 2 cut(s) 562, 1191
RsaNI GTAC 2 cut(s) 561, 1190
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 6 cut(s) 217, 301, 310, 354, 581, 1178
Sau96I GGNCC 3 cut(s) 265, 852, 1095
ScaI AGTACT 1 cut(s) 562
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 7 cut(s) 604, 626, 637, 649, 650, 908, 968
SduI GDGCHC 5 cut(s) 89, 123, 152, 649, 807
SfaNI GCATC 4 cut(s) 603, 746, 948, 963
SfcI CTRYAG 1 cut(s) 75
SgrAI CRCCGGYG 1 cut(s) 758
SinI GGWCC 3 cut(s) 265, 852, 1095
SmaI CCCGGG 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 5 cut(s) 293, 499, 899, 913, 1108
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 7 cut(s) 602, 624, 635, 647, 648, 906, 966
StyI CCWWGG 3 cut(s) 663, 1170, 1233
TaaI ACNGT 1 cut(s) 791
TaqI TCGA 4 cut(s) 181, 197, 465, 542
TasI AATT 5 cut(s) 293, 499, 899, 913, 1108
TatI WGTACW 1 cut(s) 560
TauI GCSGC 9 cut(s) 108, 111, 368, 1025, 1035, 1074, 1214, 1217, 1223
TfiI GAWTC 6 cut(s) 16, 183, 467, 520, 765, 1240
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 348, 1192
TseFI GTSAC 2 cut(s) 491, 947
Tsp45I GTSAC 2 cut(s) 491, 947
TspDTI ATGAA 2 cut(s) 1101, 1189
TspGWI ACGGA 3 cut(s) 460, 1191, 1302
TspMI CCCGGG 1 cut(s) 648
TspRI CASTG 2 cut(s) 348, 1192
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 3 cut(s) 265, 852, 1095
XapI RAATTY 1 cut(s) 913
XceI RCATGY 1 cut(s) 541
XcmI CCANNNNNNNNNTGG 2 cut(s) 340, 1262
XmaI CCCGGG 1 cut(s) 648
ZrmI AGTACT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.