FvH4_3g05220
TCP Family

Transcription factor TCP2-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
3017766 .. 3024201
6436 bp
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UTR
Exon/CDS
Intron
FvH4_3g05220.t1

Sequence Viewer

Length: 1383 bp
ATGGAGGTTGAGGAGATTCCAGCTCAGCAGCCCTGCAAGTTCCCAAGAATCGGAAATGGCGGCAGAGGAAGCAGCTCCGTAGCCAAGAACCCAGATGAGGAAGACAACAACGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGGAGATCAAGACTACTAACCACCTTAACGGGTGGCACCACTCTCGAATCATCCGGGTCTCGAGAGCCTCCGGAGGCAAAGATCGCCACAGCAAGGTGTGGACTTCAAAAGGTTTAAGGGACAGGAGGGTCCGGTTGTCGGTTTCAACAGCCATTCAGTTCTATGATCTTCAAGATCGGTTGGGTTACGACCAACCCAGCAAAGCAGTTGAGTGGTTGATAAAGTCTGCTGCTGACGCCATCGCCGAGCTTCCTTCGCTGAACACCGACTCGTTCCCGGACACTCCCAAGCAGCTCAGCGATGAGAAGAGGGGGAGCAGCGAGCATGGTTTGGACTCTGTTGAGGTTGATGTTGATGATCACCCCAATTATCACCATCAAATGAATCAACAGCAGCTTTGTCTTTCGAAATCGGCTTGCAGTAGTACTTCCGAGACAAGCAAAGGATCCGGGCTGTCGCTGTCCCGGCCGAATCGGGTGAAGGCGGCCCGGGAGCGAGCCCGGGAGAGAACAGCCAAAGAGAAGGAGAAGGAATCCAACAACAATTACAACAATAACGAGTCTTCCCGCATTGCACAGGCTATTTCTCAAAACTCATCTTTCACTGAGCTTCTCACCGGCGGAATAGGACACAACAGTAACAACAGTCCCACCGGGCATCATCATCATCAGAACTGCAACGGCGAACACGTTTTATTCCACAAGGCGGCGGCACATCAACAACAACAGATGGACTACTCATTCGGGTCGAGTAGTCTCCTCGGACTTTCCCCCACCCCTGCTCGAAACCAGCATCAATTCTCCGGGCAAATCCACCTGGGGAATTCGCTGCCGGCGCAGACATTGTTCAGCATCTCCGGTGACCACCACCACCGCAGCAGCAGCAGTAGCAGCCACCCGGAGATGCCGCAGCATTTCTCGTTCGTTCCCGACTACATCCCTGTCTCGGCGGCCGCCAATGGCGGTGAATACAACCTCAACTTCTCGATGTCGATGTCTTCTTCTGGCGGCCTTGCTGGTTTCAATGGGGGGACCCTTCAGTCCAATTCATCATCATCGCCTTCTCTTTTGTCTCAGCTCCAAAGGTTCTCTCCCATGGAGTCCAATGTACCTTTCTTCATCGGAGCCGCCGCAGCTCCAACCATGGAGAATCACCACCACCACCACCACCAGTTCCCAGCTGGATTGCAGCTCTACGGTGACGGAAGCCGGCATTCAGACCACAAGGGAAAAGCAAAGAACTGA

Protein Analysis

461

Amino Acids

49.95

Weight (kDa)

7.49

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 71 - 223 3.6e-41 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 266, 1177
AccB1I GGYRCC 1 cut(s) 174
AccIII TCCGGA 1 cut(s) 209
AclWI GGATC 2 cut(s) 579, 592
AcoI YGGCCR 2 cut(s) 605, 1089
AcsI RAATTY 1 cut(s) 961
AcuI CTGAAG 1 cut(s) 1160
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 2 cut(s) 565, 1248
AfiI CCNNNNNNNGG 6 cut(s) 50, 97, 232, 277, 844, 1084
AflIII ACRYGT 1 cut(s) 826
AgsI TTSAA 4 cut(s) 246, 285, 311, 1162
AjnI CCWGG 1 cut(s) 954
AjuI GAANNNNNNNTTGG 2 cut(s) 1235, 1267
Alw26I GTCTC 5 cut(s) 202, 566, 899, 1087, 1215
AlwI GGATC 2 cut(s) 579, 592
Ama87I CYCGRG 3 cut(s) 199, 627, 639
Aor13HI TCCGGA 1 cut(s) 209
AoxI GGCC 4 cut(s) 605, 624, 1089, 1147
ApoI RAATTY 1 cut(s) 961
ArsI GACNNNNNNTTYG 2 cut(s) 863, 895
AspLEI GCGC 1 cut(s) 976
AspS9I GGNCC 3 cut(s) 268, 625, 1170
AsuHPI GGTGA 8 cut(s) 491, 503, 628, 745, 1010, 1115, 1283, 1349
AsuII TTCGAA 1 cut(s) 545
AvaI CYCGRG 3 cut(s) 199, 627, 639
AvaII GGWCC 2 cut(s) 268, 1170
BamHI GGATCC 1 cut(s) 584
BanI GGYRCC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 640
BbsI GAAGAC 3 cut(s) 108, 693, 1128
BccI CCATC 3 cut(s) 386, 522, 862
BceAI ACGGC 2 cut(s) 127, 835
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 1 cut(s) 956
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 5 cut(s) 202, 566, 899, 1087, 1215
BlpI GCTNAGC 2 cut(s) 24, 434
BmcAI AGTACT 1 cut(s) 565
Bme18I GGWCC 2 cut(s) 268, 1170
BmeT110I CYCGRG 3 cut(s) 199, 627, 639
BmgT120I GGNCC 3 cut(s) 268, 625, 1170
BmiI GGNNCC 6 cut(s) 176, 269, 586, 1171, 1172, 1264
BmsI GCATC 4 cut(s) 805, 940, 999, 1032
BpiI GAAGAC 3 cut(s) 108, 693, 1128
Bpu1102I GCTNAGC 2 cut(s) 24, 434
Bpu14I TTCGAA 1 cut(s) 545
BsaHI GRCGYC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 6 cut(s) 627, 639, 898, 955, 1233, 1281
BsaWI WCCGGW 3 cut(s) 209, 270, 995
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 97, 232, 277, 844, 1084
Bse118I RCCGGY 3 cut(s) 755, 970, 1347
Bse1I ACTGG 1 cut(s) 1309
Bse3DI GCAATG 1 cut(s) 708
BseAI TCCGGA 1 cut(s) 209
BseBI CCWGG 1 cut(s) 956
BseDI CCNNGG 6 cut(s) 627, 639, 898, 955, 1233, 1281
BseGI GGATG 2 cut(s) 189, 1074
BseLI CCNNNNNNNGG 6 cut(s) 50, 97, 232, 277, 844, 1084
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 4 cut(s) 38, 448, 735, 1226
BseNI ACTGG 1 cut(s) 1309
BseRI GAGGAG 2 cut(s) 26, 887
BseX3I CGGCCG 2 cut(s) 605, 1089
BseYI CCCAGC 2 cut(s) 335, 1315
Bsh1285I CGRYCG 2 cut(s) 608, 1092
BshFI GGCC 4 cut(s) 607, 626, 1091, 1149
BshNI GGYRCC 1 cut(s) 174
BsiEI CGRYCG 2 cut(s) 608, 1092
BsiHKCI CYCGRG 3 cut(s) 199, 627, 639
BslFI GGGAC 4 cut(s) 272, 586, 771, 1183
BslI CCNNNNNNNGG 6 cut(s) 50, 97, 232, 277, 844, 1084
BsmAI GTCTC 5 cut(s) 202, 566, 899, 1087, 1215
BsmFI GGGAC 4 cut(s) 272, 586, 771, 1183
BsmI GAATGC 1 cut(s) 1351
BsnI GGCC 4 cut(s) 607, 626, 1091, 1149
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 3 cut(s) 199, 627, 639
Bsp119I TTCGAA 1 cut(s) 545
Bsp1286I GDGCHC 1 cut(s) 640
Bsp13I TCCGGA 1 cut(s) 209
Bsp143I GATC 6 cut(s) 144, 220, 304, 313, 496, 584
Bsp1720I GCTNAGC 2 cut(s) 24, 434
Bsp19I CCATGG 2 cut(s) 1233, 1281
BspANI GGCC 4 cut(s) 607, 626, 1091, 1149
BspCNI CTCAG 4 cut(s) 37, 447, 736, 1225
BspEI TCCGGA 1 cut(s) 209
BspLI GGNNCC 6 cut(s) 176, 269, 586, 1171, 1172, 1264
BspPI GGATC 2 cut(s) 579, 592
BspT104I TTCGAA 1 cut(s) 545
BspT107I GGYRCC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 708
BsrFI RCCGGY 3 cut(s) 755, 970, 1347
BsrI ACTGG 1 cut(s) 1309
BssAI RCCGGY 3 cut(s) 755, 970, 1347
BssECI CCNNGG 6 cut(s) 627, 639, 898, 955, 1233, 1281
BssMI GATC 6 cut(s) 144, 220, 304, 313, 496, 584
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 2 cut(s) 1233, 1281
Bst2UI CCWGG 1 cut(s) 956
Bst4CI ACNGT 3 cut(s) 776, 785, 1337
Bst6I CTCTTC 1 cut(s) 440
BstACI GRCGYC 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 545
BstC8I GCNNGC 5 cut(s) 461, 556, 636, 972, 1349
BstDEI CTNAG 4 cut(s) 24, 434, 744, 1212
BstDSI CCRYGG 2 cut(s) 1233, 1281
BstEII GGTNACC 1 cut(s) 998
BstF5I GGATG 2 cut(s) 189, 1074
BstHHI GCGC 1 cut(s) 976
BstKTI GATC 6 cut(s) 147, 223, 307, 316, 499, 587
BstMAI GTCTC 5 cut(s) 202, 566, 899, 1087, 1215
BstMBI GATC 6 cut(s) 144, 220, 304, 313, 496, 584
BstMCI CGRYCG 2 cut(s) 608, 1092
BstNI CCWGG 1 cut(s) 956
BstPI GGTNACC 1 cut(s) 998
BstV2I GAAGAC 3 cut(s) 108, 693, 1128
BstX2I RGATCY 1 cut(s) 584
BstYI RGATCY 1 cut(s) 584
BstZI CGGCCG 2 cut(s) 605, 1089
BsuRI GGCC 4 cut(s) 607, 626, 1091, 1149
BtgI CCRYGG 2 cut(s) 1233, 1281
BtgZI GCGATG 3 cut(s) 364, 453, 1179
BtsCI GGATG 2 cut(s) 189, 1074
BtsIMutI CAGTG 1 cut(s) 741
Cac8I GCNNGC 5 cut(s) 461, 556, 636, 972, 1349
CciNI GCGGCCGC 1 cut(s) 1089
CfoI GCGC 1 cut(s) 976
Cfr10I RCCGGY 3 cut(s) 755, 970, 1347
Cfr13I GGNCC 3 cut(s) 268, 625, 1170
Cfr9I CCCGGG 2 cut(s) 627, 639
CseI GACGC 1 cut(s) 383
Csp6I GTAC 2 cut(s) 564, 1247
CviAII CATG 3 cut(s) 464, 1234, 1282
CviQI GTAC 2 cut(s) 564, 1247
DdeI CTNAG 4 cut(s) 24, 434, 744, 1212
DpnI GATC 6 cut(s) 146, 222, 306, 315, 498, 586
DpnII GATC 6 cut(s) 144, 220, 304, 313, 496, 584
DrdI GACNNNNNNGTC 2 cut(s) 266, 1177
DseDI GACNNNNNNGTC 2 cut(s) 266, 1177
EaeI YGGCCR 2 cut(s) 605, 1089
EagI CGGCCG 2 cut(s) 605, 1089
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
EciI GGCGGA 1 cut(s) 774
EclXI CGGCCG 2 cut(s) 605, 1089
Eco130I CCWWGG 2 cut(s) 1233, 1281
Eco24I GRGCYC 1 cut(s) 640
Eco31I GGTCTC 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 268, 1170
Eco52I CGGCCG 2 cut(s) 605, 1089
Eco57I CTGAAG 1 cut(s) 1160
Eco88I CYCGRG 3 cut(s) 199, 627, 639
Eco91I GGTNACC 1 cut(s) 998
EcoO109I RGGNCCY 1 cut(s) 1170
EcoO65I GGTNACC 1 cut(s) 998
EcoRI GAATTC 1 cut(s) 961
EcoRII CCWGG 1 cut(s) 954
EcoT14I CCWWGG 2 cut(s) 1233, 1281
EcoT38I GRGCYC 1 cut(s) 640
ErhI CCWWGG 2 cut(s) 1233, 1281
FaeI CATG 3 cut(s) 467, 1237, 1285
FaiI YATR 4 cut(s) 303, 465, 1235, 1283
FaqI GGGAC 4 cut(s) 272, 586, 771, 1183
FatI CATG 3 cut(s) 463, 1233, 1281
FauI CCCGC 1 cut(s) 713
FbaI TGATCA 1 cut(s) 496
FokI GGATG 2 cut(s) 176, 1061
FriOI GRGCYC 1 cut(s) 640
GlaI GCGC 1 cut(s) 975
GsaI CCCAGC 2 cut(s) 339, 1319
HaeIII GGCC 4 cut(s) 607, 626, 1091, 1149
HgaI GACGC 1 cut(s) 383
HhaI GCGC 1 cut(s) 976
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 3 cut(s) 467, 1237, 1285
Hin6I GCGC 1 cut(s) 974
HinP1I GCGC 1 cut(s) 974
HphI GGTGA 8 cut(s) 491, 503, 628, 745, 1010, 1115, 1283, 1349
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 6 cut(s) 53, 571, 810, 902, 1262, 1357
Hpy188III TCNNGA 8 cut(s) 148, 183, 199, 201, 210, 311, 1067, 1123
Hpy8I GTNNAC 1 cut(s) 240
HpyAV CCTTC 6 cut(s) 402, 613, 655, 661, 1184, 1209
HpyCH4III ACNGT 3 cut(s) 776, 785, 1337
HpyCH4IV ACGT 1 cut(s) 828
HpyCH4V TGCA 5 cut(s) 36, 558, 713, 816, 1327
HpyF3I CTNAG 4 cut(s) 24, 434, 744, 1212
HpySE526I ACGT 1 cut(s) 828
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 3 cut(s) 467, 1237, 1285
HspAI GCGC 1 cut(s) 974
KflI GGGWCCC 1 cut(s) 1170
Kpn2I TCCGGA 1 cut(s) 209
KroI GCCGGC 2 cut(s) 970, 1347
KroNI GCCGGC 2 cut(s) 972, 1349
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 6 cut(s) 144, 220, 304, 313, 496, 584
LmnI GCTCC 6 cut(s) 80, 453, 631, 1221, 1262, 1279
LweI GCATC 4 cut(s) 805, 940, 999, 1032
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 4 cut(s) 323, 776, 998, 1337
MalI GATC 6 cut(s) 146, 222, 306, 315, 498, 586
MboI GATC 6 cut(s) 144, 220, 304, 313, 496, 584
MboII GAAGA 7 cut(s) 113, 299, 457, 693, 1128, 1131, 1246
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 5 cut(s) 505, 682, 935, 961, 1183
MlyI GAGTC 4 cut(s) 401, 467, 707, 1247
MmeI TCCRAC 2 cut(s) 699, 1301
MroI TCCGGA 1 cut(s) 209
MroNI GCCGGC 2 cut(s) 970, 1347
MseI TTAA 2 cut(s) 165, 254
MspA1I CMGCKG 1 cut(s) 1319
Mva1269I GAATGC 1 cut(s) 1351
MvaI CCWGG 1 cut(s) 956
NaeI GCCGGC 2 cut(s) 972, 1349
NcoI CCATGG 2 cut(s) 1233, 1281
NdeII GATC 6 cut(s) 144, 220, 304, 313, 496, 584
NgoMIV GCCGGC 2 cut(s) 970, 1347
NlaIII CATG 3 cut(s) 467, 1237, 1285
NlaIV GGNNCC 6 cut(s) 176, 269, 586, 1171, 1172, 1264
NmeAIII GCCGAG 2 cut(s) 409, 1064
NmuCI GTSAC 2 cut(s) 998, 1337
NotI GCGGCCGC 1 cut(s) 1089
NspV TTCGAA 1 cut(s) 545
PaeR7I CTCGAG 1 cut(s) 199
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 825
PctI GAATGC 1 cut(s) 1351
PdiI GCCGGC 2 cut(s) 972, 1349
PfeI GAWTC 7 cut(s) 16, 48, 186, 523, 610, 671, 1288
PfoI TCCNGGA 1 cut(s) 414
PleI GAGTC 4 cut(s) 401, 467, 706, 1246
PpsI GAGTC 4 cut(s) 401, 467, 706, 1246
PpuMI RGGWCCY 1 cut(s) 1170
Psp5II RGGWCCY 1 cut(s) 1170
Psp6I CCWGG 1 cut(s) 954
PspEI GGTNACC 1 cut(s) 998
PspFI CCCAGC 2 cut(s) 335, 1315
PspGI CCWGG 1 cut(s) 954
PspN4I GGNNCC 6 cut(s) 176, 269, 586, 1171, 1172, 1264
PspPI GGNCC 3 cut(s) 268, 625, 1170
PspPPI RGGWCCY 1 cut(s) 1170
PsuI RGATCY 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 1319
RsaI GTAC 2 cut(s) 565, 1248
RsaNI GTAC 2 cut(s) 564, 1247
SaqAI TTAA 2 cut(s) 165, 254
Sau3AI GATC 6 cut(s) 144, 220, 304, 313, 496, 584
Sau96I GGNCC 3 cut(s) 268, 625, 1170
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 4 cut(s) 401, 467, 707, 1247
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 4 cut(s) 805, 940, 999, 1032
Sfr274I CTCGAG 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 545
SgrAI CRCCGGYG 1 cut(s) 755
SinI GGWCC 2 cut(s) 268, 1170
SlaI CTCGAG 1 cut(s) 199
SmaI CCCGGG 2 cut(s) 629, 641
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 5 cut(s) 505, 682, 935, 961, 1183
StyI CCWWGG 2 cut(s) 1233, 1281
TaaI ACNGT 3 cut(s) 776, 785, 1337
TaiI ACGT 1 cut(s) 831
TaqI TCGA 7 cut(s) 184, 200, 545, 887, 922, 1124, 1130
TasI AATT 5 cut(s) 505, 682, 935, 961, 1183
TatI WGTACW 1 cut(s) 563
TfiI GAWTC 7 cut(s) 16, 48, 186, 523, 610, 671, 1288
Tru1I TTAA 2 cut(s) 165, 254
Tru9I TTAA 2 cut(s) 165, 254
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 2 cut(s) 998, 1337
Tsp45I GTSAC 2 cut(s) 998, 1337
TspDTI ATGAA 3 cut(s) 536, 1176, 1246
TspGWI ACGGA 2 cut(s) 67, 1356
TspMI CCCGGG 2 cut(s) 627, 639
TspRI CASTG 1 cut(s) 748
VpaK11BI GGWCC 2 cut(s) 268, 1170
XapI RAATTY 1 cut(s) 961
XcmI CCANNNNNNNNNTGG 1 cut(s) 1316
XhoI CTCGAG 1 cut(s) 199
XmaI CCCGGG 2 cut(s) 627, 639
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.