Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005089

Physical Location & Seq

Genomic Coordinates Forward (+)

1243490 .. 1244110

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAGTTGCTCCACATCTTTGCACTCCTAGCAACAATGGCTGTTGTTTCAGCTGCATTTGATCTGGAAGATTACAATGAAGAACCGGAAGTGCAGAGTAATGAATCAACGGTGCCTGAATCTGAAATGCAAGAAGCGACTACTTCTTTGAGAGGAGTGAGCCGCTTTCTGACTTCCCAGCAGAACCTGTTGGGAAACTTGACCTGCAACAAGTTTCCTAGGGTTTGTCGTCTGAAGAAGAGCCCAGGGCCCGACTGCTGCAAGAAGAAGTGTGTCAATGTGAAGACGGATAAATTGAACTGCGGGTTCTGCGGGCGCAAGTGCAAGCAAACTGAGATTTGTTGCAAGGGGAAGTGCGTCAATGTGAAGACGGATAAATTGAACTGCGGGGTCTGCGGTTACAAATGCAAGTACCCTGAGATTTGTTGCAAGGGAAAGTGCGTCAATGTGAAGACGGATAAATTGAACTGCGGGATCTGCGGTTACAAGTGCAAGTACCCTGAGATTTGCTGCAAGGGGAAGTGCGTCAATCCAACTTGTGACAAAAAGAATTGCGGTGGATGCAACAAGAAGTGCAAGAGAGGGGAGTTATGTGTTTATGGGATGTGCAATTATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0008285 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010099 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0042127 GO:0045935 GO:0045962 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

206

Amino Acids

22.78

Weight (kDa)

8.92

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stig1	PF04885	68 - 142	1.6e-20	Stigma-specific STIG1-like protein family
Stig1	PF04885	140 - 206	8.8e-22	Stigma-specific STIG1-like protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30210 AT1G30210 AT4G18390 AT4G18390
fragaria_vesca	FvH4_3g05220 FvH4_3g05220
malus_domestica	MD05G1281100.v1.1 MD10G1259500.v1.1
prunus_persica	Prupe.3G099100_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1
pyrus_communis	pycom05g10530 pycom05g26120 pycom10g21590
rosa_chinensis	RchiOBHm_Chr5g0014491
rosa_laevigata	RLG00000032116
rosa_multiflora	Rmu_sc0000441.1_g000121 Rmu_sc0017039.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062060
rosa_rugosa	Rorug05G0018400 Rorug05G0018500
rosa_samantha	Rh5AG113800 Rh5BG110400 Rh5CG122300 Rh5DG109700
rosa_wichuraiana	Rw5G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	112
AciI	CCGC	8 cut(s)	163, 303, 312, 387, 396, 471, 480, 555
AclWI	GGATC	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	2 cut(s)	413, 497
AgsI	TTSAA	3 cut(s)	298, 382, 466
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	1 cut(s)	248
ApaI	GGGCCC	1 cut(s)	252
ApeKI	GCWGC	3 cut(s)	53, 258, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	130, 162
AspA2I	CCTAGG	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	248, 249
AvrII	CCTAGG	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	2 cut(s)	245, 252
BbsI	GAAGAC	3 cut(s)	290, 374, 458
BbvI	GCAGC	3 cut(s)	40, 245, 497
BciT130I	CCWGG	1 cut(s)	246
BfaI	CTAG	2 cut(s)	29, 219
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	4 cut(s)	54, 163, 259, 511
BlnI	CCTAGG	1 cut(s)	218
BlsI	GCNGC	4 cut(s)	55, 164, 260, 512
Bme1390I	CCNGG	1 cut(s)	246
BmgT120I	GGNCC	2 cut(s)	248, 249
BmiI	GGNNCC	2 cut(s)	114, 250
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	551
BpiI	GAAGAC	3 cut(s)	290, 374, 458
BsaJI	CCNNGG	3 cut(s)	218, 244, 245
BsaWI	WCCGGW	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	3 cut(s)	218, 244, 245
BseGI	GGATG	2 cut(s)	566, 609
BseMII	CTCAG	3 cut(s)	324, 408, 492
BseRI	GAGGAG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	3 cut(s)	40, 245, 497
BseYI	CCCAGC	1 cut(s)	177
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	86
BsnI	GGCC	1 cut(s)	250
Bsp120I	GGGCCC	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	245, 252
Bsp143I	GATC	2 cut(s)	61, 474
BspACI	CCGC	8 cut(s)	163, 303, 312, 387, 396, 471, 480, 555
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	3 cut(s)	325, 409, 493
BspLI	GGNNCC	2 cut(s)	114, 250
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	482
BspQI	GCTCTTC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	218, 244, 245
BssMI	GATC	2 cut(s)	61, 474
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	314, 326
BstDEI	CTNAG	3 cut(s)	333, 417, 501
BstF5I	GGATG	2 cut(s)	566, 609
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	2 cut(s)	64, 477
BstMBI	GATC	2 cut(s)	61, 474
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 38, 309, 393, 477, 561
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	40, 245, 497
BstV2I	GAAGAC	3 cut(s)	290, 374, 458
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	566, 609
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	2 cut(s)	314, 326
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	2 cut(s)	248, 249
CseI	GACGC	3 cut(s)	346, 430, 514
Csp6I	GTAC	2 cut(s)	412, 496
CviAII	CATG	1 cut(s)	618
CviJI	RGCY	5 cut(s)	41, 53, 162, 243, 250
CviKI_1	RGCY	5 cut(s)	41, 53, 162, 243, 250
CviQI	GTAC	2 cut(s)	412, 496
DdeI	CTNAG	3 cut(s)	333, 417, 501
DpnI	GATC	2 cut(s)	63, 476
DpnII	GATC	2 cut(s)	61, 474
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	218
Eco24I	GRGCYC	2 cut(s)	245, 252
Eco57I	CTGAAG	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	2 cut(s)	245, 252
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	1 cut(s)	621
FaiI	YATR	4 cut(s)	592, 600, 615, 619
FatI	CATG	1 cut(s)	617
FauI	CCCGC	4 cut(s)	296, 305, 380, 464
Fnu4HI	GCNGC	4 cut(s)	54, 163, 259, 511
FokI	GGATG	2 cut(s)	573, 616
FriOI	GRGCYC	2 cut(s)	245, 252
Fsp4HI	GCNGC	4 cut(s)	54, 163, 259, 511
FspBI	CTAG	2 cut(s)	29, 219
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	4 cut(s)	54, 163, 259, 511
GsaI	CCCAGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	3 cut(s)	346, 430, 514
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	621
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	104, 119
HpaII	CCGG	1 cut(s)	86
Hpy188I	TCNGA	3 cut(s)	124, 171, 234
Hpy188III	TCNNGA	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 38, 309, 393, 477, 561
HpyF3I	CTNAG	3 cut(s)	333, 417, 501
Hsp92II	CATG	1 cut(s)	621
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	61, 474
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	15
Lsp1109I	GCAGC	3 cut(s)	40, 245, 497
LweI	GCATC	1 cut(s)	551
MaeI	CTAG	2 cut(s)	29, 219
MaeIII	GTNAC	3 cut(s)	398, 482, 539
MalI	GATC	2 cut(s)	63, 476
MboI	GATC	2 cut(s)	61, 474
MboII	GAAGA	8 cut(s)	80, 92, 247, 250, 277, 295, 379, 463
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	2 cut(s)	245, 252
MluCI	AATT	5 cut(s)	293, 377, 461, 550, 610
MmeI	TCCRAC	1 cut(s)	557
MnlI	CCTC	2 cut(s)	146, 575
Mph1103I	ATGCAT	1 cut(s)	619
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	6 cut(s)	29, 38, 309, 393, 477, 561
NdeII	GATC	2 cut(s)	61, 474
NlaIII	CATG	1 cut(s)	621
NlaIV	GGNNCC	2 cut(s)	114, 250
NmuCI	GTSAC	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	619
PasI	CCCWGGG	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	104, 119
PkrI	GCNGC	4 cut(s)	55, 164, 260, 512
Psp6I	CCWGG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	114, 250
PspOMI	GGGCCC	1 cut(s)	248
PspPI	GGNCC	2 cut(s)	248, 249
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	474
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	2 cut(s)	413, 497
RsaNI	GTAC	2 cut(s)	412, 496
SapI	GCTCTTC	1 cut(s)	233
SatI	GCNGC	4 cut(s)	54, 163, 259, 511
Sau3AI	GATC	2 cut(s)	61, 474
Sau96I	GGNCC	2 cut(s)	248, 249
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	245, 252
SetI	ASST	3 cut(s)	55, 189, 206
SfaNI	GCATC	1 cut(s)	551
Sse9I	AATT	5 cut(s)	293, 377, 461, 550, 610
SsiI	CCGC	8 cut(s)	163, 303, 312, 387, 396, 471, 480, 555
SspMI	CTAG	2 cut(s)	29, 219
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	112
TasI	AATT	5 cut(s)	293, 377, 461, 550, 610
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	104, 119
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	3 cut(s)	53, 258, 510
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	3 cut(s)	17, 93, 117
TspGWI	ACGGA	3 cut(s)	302, 386, 470
XmaJI	CCTAGG	1 cut(s)	218
XspI	CTAG	2 cut(s)	29, 219
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.