Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005089

Physical Location & Seq

Genomic Coordinates Reverse (-)

7615004 .. 7615351

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G099100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGACGAGGAGGAGATTCAAGCCCAAGCATGTAAGTTCCCAAGAATTGGAAACGGCAGCAGCAGTGCCACTAACCCAGCTGCCGACGACGAAGATCAAGACCCATCGTGTCTAGCCCTCAAGAGGGCTGACAACCGCTTCCGCGAGTGGCACTACTCCTGCATCATCCACGTCTCGAGGGCCTCCGGCTACAAAGATCGGCACAACAAGGTGTGGACTTCAAAGGGGCTCAGAGACCGATCCCCCAGCCCCATCCCCATGCGAGATTCACCCCTAGATCGCCGCCTAACGCCATCATACATACAACCACCCCATCCCCACCCGAAACGGATGCTAGTTTGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0008285 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010099 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0042127 GO:0045935 GO:0045962 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

116

Amino Acids

13.22

Weight (kDa)

8.91

Isoelectric Point (pI)

74.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30210 AT1G30210 AT4G18390 AT4G18390
fragaria_vesca	FvH4_3g05220 FvH4_3g05220
malus_domestica	MD05G1281100.v1.1 MD10G1259500.v1.1
prunus_persica	Prupe.3G099100_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1
pyrus_communis	pycom05g10530 pycom05g26120 pycom10g21590
rosa_chinensis	RchiOBHm_Chr5g0014491
rosa_laevigata	RLG00000032116
rosa_multiflora	Rmu_sc0000441.1_g000121 Rmu_sc0017039.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062060
rosa_rugosa	Rorug05G0018400 Rorug05G0018500
rosa_samantha	Rh5AG113800 Rh5BG110400 Rh5CG122300 Rh5DG109700
rosa_wichuraiana	Rw5G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	47
AccII	CGCG	1 cut(s)	144
AciI	CCGC	3 cut(s)	136, 142, 283
AclWI	GGATC	1 cut(s)	234
AfiI	CCNNNNNNNGG	3 cut(s)	47, 123, 124
AgsI	TTSAA	2 cut(s)	20, 222
AjiI	CACGTC	1 cut(s)	172
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw26I	GTCTC	2 cut(s)	178, 228
AlwI	GGATC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	3 cut(s)	57, 60, 80
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	67, 69, 72
BccI	CCATC	4 cut(s)	112, 260, 301, 321
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BcoDI	GTCTC	2 cut(s)	178, 228
BfaI	CTAG	3 cut(s)	113, 275, 335
BisI	GCNGC	4 cut(s)	58, 61, 81, 283
BlsI	GCNGC	4 cut(s)	59, 62, 82, 284
BmeT110I	CYCGRG	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	180
BmsI	GCATC	2 cut(s)	171, 321
BpuEI	CTTGAG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 123, 124
BseGI	GGATG	4 cut(s)	165, 252, 313, 336
BseLI	CCNNNNNNNGG	3 cut(s)	47, 123, 124
BseMII	CTCAG	1 cut(s)	244
BseRI	GAGGAG	2 cut(s)	23, 26
BseXI	GCAGC	3 cut(s)	67, 69, 72
BseYI	CCCAGC	2 cut(s)	76, 245
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	47, 123, 124
BsmAI	GTCTC	2 cut(s)	178, 228
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	228
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	94, 196, 239, 277
BspACI	CCGC	3 cut(s)	136, 142, 283
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	144
BspPI	GGATC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	228
BssMI	GATC	4 cut(s)	94, 196, 239, 277
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	4 cut(s)	165, 252, 313, 336
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	4 cut(s)	97, 199, 242, 280
BstMAI	GTCTC	2 cut(s)	178, 228
BstMBI	GATC	4 cut(s)	94, 196, 239, 277
BstNSI	RCATGY	1 cut(s)	33
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	67, 69, 72
BsuRI	GGCC	1 cut(s)	182
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	4 cut(s)	165, 252, 313, 336
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	180
CviAII	CATG	2 cut(s)	30, 259
CviJI	RGCY	8 cut(s)	23, 80, 116, 128, 182, 189, 229, 249
CviKI_1	RGCY	8 cut(s)	23, 80, 116, 128, 182, 189, 229, 249
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	4 cut(s)	96, 198, 241, 279
DpnII	GATC	4 cut(s)	94, 196, 239, 277
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	2 cut(s)	33, 262
FaiI	YATR	4 cut(s)	31, 260, 298, 302
FatI	CATG	2 cut(s)	29, 258
Fnu4HI	GCNGC	4 cut(s)	58, 61, 81, 283
FokI	GGATG	4 cut(s)	152, 239, 300, 343
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	58, 61, 81, 283
FspBI	CTAG	3 cut(s)	113, 275, 335
GluI	GCNGC	4 cut(s)	58, 61, 81, 283
GsaI	CCCAGC	2 cut(s)	80, 249
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	2 cut(s)	33, 262
HinfI	GANTC	2 cut(s)	16, 266
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	261
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	233, 347
Hpy188III	TCNNGA	3 cut(s)	98, 121, 175
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	2 cut(s)	89, 92
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	162
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	33, 262
Kzo9I	GATC	4 cut(s)	94, 196, 239, 277
LpnPI	CCDG	4 cut(s)	90, 172, 199, 259
Lsp1109I	GCAGC	3 cut(s)	67, 69, 72
LweI	GCATC	2 cut(s)	171, 321
MaeI	CTAG	3 cut(s)	113, 275, 335
MaeII	ACGT	1 cut(s)	171
MalI	GATC	4 cut(s)	96, 198, 241, 279
MboI	GATC	4 cut(s)	94, 196, 239, 277
MboII	GAAGA	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	1 cut(s)	45
MnlI	CCTC	5 cut(s)	4, 117, 128, 171, 193
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	144
NdeII	GATC	4 cut(s)	94, 196, 239, 277
NlaIII	CATG	2 cut(s)	33, 262
NspI	RCATGY	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	16, 266
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	4 cut(s)	59, 62, 82, 284
PspFI	CCCAGC	2 cut(s)	76, 245
PspPI	GGNCC	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	257
SatI	GCNGC	4 cut(s)	58, 61, 81, 283
Sau3AI	GATC	4 cut(s)	94, 196, 239, 277
Sau96I	GGNCC	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	3 cut(s)	82, 174, 213
SfaNI	GCATC	2 cut(s)	171, 321
Sfr274I	CTCGAG	1 cut(s)	175
SlaI	CTCGAG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	119, 175
SmoI	CTYRAG	2 cut(s)	119, 175
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	3 cut(s)	136, 142, 283
SspMI	CTAG	3 cut(s)	113, 275, 335
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	176
TaqII	GACCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	45
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	16, 266
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	3 cut(s)	57, 60, 80
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	47
XceI	RCATGY	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	175
XspI	CTAG	3 cut(s)	113, 275, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.