Rh5CG122000

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011877
Physical Location & Seq
Forward (+)
10089952 .. 10096115
6164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG122000.1

Sequence Viewer

Length: 1134 bp
ATGAAGGCATTACAAGAACAGGCAGAAAGGCTCACTCTTAGTTCCCGAGCTTTCTATAATGATAGATTTCCAGTATTTGCTGAGTATCTAACAAGCATGTTTGATTATGATATGGTGCTGCCTATGAACACTGGTGCGGAAGCTGTAGAAACAGCTTTAAAGTTGGCAAGGAAATGGGGTTATGAGAAGAAAAAAATTCCAAAAGATGAGGCTATTATTGTCTCATGTTGTGGCTGCTTCCATGGTCGTACATTGGCTGTCATTTCTATGAGCTGTGACAATGAGGCAACTCGAGGTTTTTGGCCCTTAGTGCCAGGACATCTTAAAGTTGATTTTGGTGATGCAGTTGGCCTTGAAAAAATCTTTAAAGAGAATGGAGATCGAATTGCTGGATTTCTTTTTGAACCCATTCAAGGAGAGGCTGGGGTTATAATTCCTCCAGATGGTTATTTGAAATCAGTCAGAGATCTATGCACAAAATATAACATTTTGATGATTGATGATGAAATACAATCTGGTTTAGCACGGTCAGGAAGAATGCTGGCTTGTGATTGGGAAGAAGTTCGCCCAGATGTAGTGATTCTCGGAAAAGCATTGGGTGGTGGTGTGATACCTGTAAGTGCGGTGCTTGCAGACAAAGACATTATGCTTTGTATCCGACCTGGAGAGCATGGAAGTACCTTTGGTGGTAATCCGTTGGCCAGTGCTGTTGCTATTGCCTCACTAGATGTAATAAGAGATGAGAGACTTGCTGAAAGATCTGCCCAAATGGGAGAAGAGCTGAGGAATCAGCTAAACAAGATTCAGCAGAAGTACCCAAACTACATTAAGGAAGTTCGAGGAAGAGGTTTGTTCAATGCTGTGGAGCTCAATAGCAAAAACTTGTCCCCTGTTTCTGCTTATGATATCTGTCTAAAGTTGAAGGAGAGGGGAGTTCTTGCCAAGCCAACTCATGATACTATTATTAGATTGACTCCTCCACTCTCCATGAGTTTGGAAGAGCTCCAAGAAGGATCGAAGGCAATCTCAGATGTTCTGGAACATGATCTACCTAAGATGCAGAAGGAAAAACCAGAAAACATCTCTTCAACTGCTTCCAACATATGTGACCGTTGTGGACGAAACTTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0003674 GO:0003824 GO:0004587 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006536 GO:0006560 GO:0006561 GO:0006591 GO:0006593 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006972 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009084 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009628 GO:0009651 GO:0009814 GO:0009816 GO:0009987 GO:0012501 GO:0016053 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019544 GO:0019752 GO:0019842 GO:0030170 GO:0031974 GO:0033554 GO:0034050 GO:0036094 GO:0042538 GO:0042742 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046394 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051640 GO:0051641 GO:0051646 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070279 GO:0071704 GO:0097159 GO:0098542 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00330 ko01100 ko01110 ko01130 map00330 map01100 map01110 map01130
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

377

Amino Acids

41.73

Weight (kDa)

5.74

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 2 - 346 1.3e-102 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011877)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46180
fragaria_vesca FvH4_3g05240 FvH4_3g05240 FvH4_3g05240 FvH4_3g05240
malus_domestica MD05G1281300.v1.1 MD10G1260100.v1.1
prunus_persica Prupe.4G083300_v2.0.a1 Prupe.4G083300_v2.0.a1
pyrus_communis pycom10g21610
rosa_chinensis RchiOBHm_Chr5g0014471
rosa_laevigata RLG00000032113
rosa_multiflora Rmu_sc0004194.1_g000003
rosa_roxburghii Rroxscaffold_1G00062100
rosa_rugosa Rorug05G0018400
rosa_samantha Rh5AG113500 Rh5CG122000 Rh5DG109300
rosa_wichuraiana Rw5G009850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AciI CCGC 2 cut(s) 137, 623
AclWI GGATC 1 cut(s) 1021
AcoI YGGCCR 1 cut(s) 699
AcsI RAATTY 1 cut(s) 195
AfaI GTAC 4 cut(s) 250, 679, 815, 1130
AfiI CCNNNNNNNGG 2 cut(s) 413, 443
AgsI TTSAA 7 cut(s) 356, 404, 413, 454, 856, 922, 1089
AjnI CCWGG 2 cut(s) 313, 661
AluBI AGCT 8 cut(s) 50, 143, 155, 273, 781, 793, 868, 1003
AluI AGCT 8 cut(s) 50, 143, 155, 273, 781, 793, 868, 1003
Alw21I GWGCWC 2 cut(s) 870, 1005
Alw26I GTCTC 2 cut(s) 226, 739
AlwI GGATC 1 cut(s) 1021
Ama87I CYCGRG 2 cut(s) 45, 291
AoxI GGCC 3 cut(s) 302, 349, 699
ApeKI GCWGC 2 cut(s) 118, 234
ApoI RAATTY 1 cut(s) 195
Asp700I GAANNNNTTC 2 cut(s) 408, 561
AspS9I GGNCC 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 350
AvaI CYCGRG 2 cut(s) 45, 291
BalI TGGCCA 1 cut(s) 701
BanII GRGCYC 2 cut(s) 870, 1005
Bbv12I GWGCWC 2 cut(s) 870, 1005
BbvCI CCTCAGC 1 cut(s) 782
BbvI GCAGC 2 cut(s) 105, 221
BccI CCATC 1 cut(s) 437
BciT130I CCWGG 2 cut(s) 315, 663
BciVI GTATCC 1 cut(s) 665
BcoDI GTCTC 2 cut(s) 226, 739
BfaI CTAG 1 cut(s) 725
BfmI CTRYAG 1 cut(s) 144
BfuI GTATCC 1 cut(s) 665
BglII AGATCT 2 cut(s) 466, 758
BisI GCNGC 2 cut(s) 119, 235
BlsI GCNGC 2 cut(s) 120, 236
Bme1390I CCNGG 2 cut(s) 315, 663
BmeT110I CYCGRG 2 cut(s) 45, 291
BmgT120I GGNCC 1 cut(s) 303
BmrFI CCNGG 2 cut(s) 315, 663
BmsI GCATC 2 cut(s) 331, 1047
BpmI CTGGAG 2 cut(s) 423, 684
Bpu10I CCTNAGC 1 cut(s) 782
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 443
Bse1I ACTGG 3 cut(s) 71, 136, 702
BseBI CCWGG 2 cut(s) 315, 663
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 413, 443
BseMII CTCAG 3 cut(s) 72, 773, 1041
BseNI ACTGG 3 cut(s) 71, 136, 702
BseRI GAGGAG 1 cut(s) 966
BseXI GCAGC 2 cut(s) 105, 221
BseYI CCCAGC 1 cut(s) 422
BshFI GGCC 3 cut(s) 304, 351, 701
BsiHKAI GWGCWC 2 cut(s) 870, 1005
BsiHKCI CYCGRG 2 cut(s) 45, 291
BslFI GGGAC 1 cut(s) 871
BslI CCNNNNNNNGG 2 cut(s) 413, 443
BsmAI GTCTC 2 cut(s) 226, 739
BsmFI GGGAC 1 cut(s) 871
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 3 cut(s) 304, 351, 701
BsoBI CYCGRG 2 cut(s) 45, 291
Bsp1286I GDGCHC 2 cut(s) 870, 1005
Bsp143I GATC 5 cut(s) 379, 466, 758, 1013, 1045
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 2 cut(s) 137, 623
BspANI GGCC 3 cut(s) 304, 351, 701
BspCNI CTCAG 3 cut(s) 73, 774, 1040
BspHI TCATGA 1 cut(s) 952
BspPI GGATC 1 cut(s) 1021
BspQI GCTCTTC 2 cut(s) 771, 993
BsrI ACTGG 3 cut(s) 71, 136, 702
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 5 cut(s) 379, 466, 758, 1013, 1045
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 2 cut(s) 315, 663
Bst4CI ACNGT 2 cut(s) 528, 1112
Bst6I CTCTTC 4 cut(s) 771, 838, 993, 1090
BstC8I GCNNGC 2 cut(s) 543, 630
BstDEI CTNAG 6 cut(s) 38, 81, 307, 782, 1027, 1053
BstDSI CCRYGG 1 cut(s) 241
BstKTI GATC 5 cut(s) 382, 469, 761, 1016, 1048
BstMAI GTCTC 2 cut(s) 226, 739
BstMBI GATC 5 cut(s) 379, 466, 758, 1013, 1045
BstMWI GCNNNNNNNGC 2 cut(s) 310, 629
BstNI CCWGG 2 cut(s) 315, 663
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 313, 661
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 105, 221
BstX2I RGATCY 2 cut(s) 466, 758
BstXI CCANNNNNNTGG 1 cut(s) 994
BstYI RGATCY 2 cut(s) 466, 758
BsuI GTATCC 1 cut(s) 665
BsuRI GGCC 3 cut(s) 304, 351, 701
BtgI CCRYGG 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 129, 709
Cac8I GCNNGC 2 cut(s) 543, 630
CciI TCATGA 1 cut(s) 952
Cfr13I GGNCC 1 cut(s) 303
Csp6I GTAC 4 cut(s) 249, 678, 814, 1129
CviAII CATG 7 cut(s) 97, 225, 242, 671, 953, 988, 1043
CviQI GTAC 4 cut(s) 249, 678, 814, 1129
DdeI CTNAG 6 cut(s) 38, 81, 307, 782, 1027, 1053
DpnI GATC 5 cut(s) 381, 468, 760, 1015, 1047
DpnII GATC 5 cut(s) 379, 466, 758, 1013, 1045
DraI TTTAAA 2 cut(s) 159, 367
EaeI YGGCCR 1 cut(s) 699
Eam1104I CTCTTC 4 cut(s) 771, 838, 993, 1090
EarI CTCTTC 4 cut(s) 771, 838, 993, 1090
Ecl136II GAGCTC 2 cut(s) 868, 1003
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 2 cut(s) 870, 1005
Eco32I GATATC 1 cut(s) 907
Eco53kI GAGCTC 2 cut(s) 868, 1003
Eco88I CYCGRG 2 cut(s) 45, 291
EcoICRI GAGCTC 2 cut(s) 868, 1003
EcoRII CCWGG 2 cut(s) 313, 661
EcoRV GATATC 1 cut(s) 907
EcoT14I CCWWGG 1 cut(s) 241
EcoT38I GRGCYC 2 cut(s) 870, 1005
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 7 cut(s) 100, 228, 245, 674, 956, 991, 1046
FaqI GGGAC 1 cut(s) 871
FatI CATG 7 cut(s) 96, 224, 241, 670, 952, 987, 1042
FauNDI CATATG 1 cut(s) 1103
Fnu4HI GCNGC 2 cut(s) 119, 235
FriOI GRGCYC 2 cut(s) 870, 1005
Fsp4HI GCNGC 2 cut(s) 119, 235
FspBI CTAG 1 cut(s) 725
GluI GCNGC 2 cut(s) 119, 235
GsaI CCCAGC 1 cut(s) 426
GsuI CTGGAG 2 cut(s) 423, 684
HaeIII GGCC 3 cut(s) 304, 351, 701
Hin1II CATG 7 cut(s) 100, 228, 245, 674, 956, 991, 1046
HinfI GANTC 4 cut(s) 580, 787, 802, 973
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 1118
Hpy188I TCNGA 4 cut(s) 464, 587, 659, 1030
Hpy188III TCNNGA 5 cut(s) 45, 440, 531, 953, 1037
Hpy8I GTNNAC 1 cut(s) 1118
HpyAV CCTTC 4 cut(s) 916, 1004, 1012, 1057
HpyCH4III ACNGT 2 cut(s) 528, 1112
HpyCH4V TGCA 4 cut(s) 344, 474, 632, 1060
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 629
HpyF3I CTNAG 6 cut(s) 38, 81, 307, 782, 1027, 1053
Hsp92II CATG 7 cut(s) 100, 228, 245, 674, 956, 991, 1046
Kzo9I GATC 5 cut(s) 379, 466, 758, 1013, 1045
LguI GCTCTTC 2 cut(s) 771, 993
LmnI GCTCC 2 cut(s) 865, 1008
Lsp1109I GCAGC 2 cut(s) 105, 221
LweI GCATC 2 cut(s) 331, 1047
MaeI CTAG 1 cut(s) 725
MaeIII GTNAC 2 cut(s) 275, 1106
MalI GATC 5 cut(s) 381, 468, 760, 1015, 1047
MboI GATC 5 cut(s) 379, 466, 758, 1013, 1045
MboII GAAGA 7 cut(s) 199, 546, 569, 788, 855, 1010, 1077
MflI RGATCY 2 cut(s) 466, 758
MhlI GDGCHC 2 cut(s) 870, 1005
MlsI TGGCCA 1 cut(s) 701
MluCI AATT 3 cut(s) 195, 384, 432
MluNI TGGCCA 1 cut(s) 701
MlyI GAGTC 1 cut(s) 967
MmeI TCCRAC 2 cut(s) 682, 1122
Mox20I TGGCCA 1 cut(s) 701
MroXI GAANNNNTTC 2 cut(s) 408, 561
MscI TGGCCA 1 cut(s) 701
MseI TTAA 4 cut(s) 158, 324, 366, 828
MslI CAYNNNNRTG 2 cut(s) 266, 491
Msp20I TGGCCA 1 cut(s) 701
MspR9I CCNGG 2 cut(s) 315, 663
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 2 cut(s) 315, 663
MwoI GCNNNNNNNGC 2 cut(s) 310, 629
NcoI CCATGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 1103
NdeII GATC 5 cut(s) 379, 466, 758, 1013, 1045
NlaIII CATG 7 cut(s) 100, 228, 245, 674, 956, 991, 1046
NmuCI GTSAC 2 cut(s) 275, 1106
NspI RCATGY 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 291
PagI TCATGA 1 cut(s) 952
PciSI GCTCTTC 2 cut(s) 771, 993
PctI GAATGC 1 cut(s) 543
PdmI GAANNNNTTC 2 cut(s) 408, 561
PfeI GAWTC 3 cut(s) 580, 787, 802
PkrI GCNGC 2 cut(s) 120, 236
PleI GAGTC 1 cut(s) 967
PpsI GAGTC 1 cut(s) 967
PsiI TTATAA 1 cut(s) 431
Psp124BI GAGCTC 2 cut(s) 870, 1005
Psp6I CCWGG 2 cut(s) 313, 661
PspFI CCCAGC 1 cut(s) 422
PspGI CCWGG 2 cut(s) 313, 661
PspPI GGNCC 1 cut(s) 303
PspXI VCTCGAGB 1 cut(s) 291
PsrI GAACNNNNNNTAC 2 cut(s) 1032, 1064
PsuI RGATCY 2 cut(s) 466, 758
RsaI GTAC 4 cut(s) 250, 679, 815, 1130
RsaNI GTAC 4 cut(s) 249, 678, 814, 1129
RseI CAYNNNNRTG 2 cut(s) 266, 491
SacI GAGCTC 2 cut(s) 870, 1005
SapI GCTCTTC 2 cut(s) 771, 993
SaqAI TTAA 4 cut(s) 158, 324, 366, 828
SatI GCNGC 2 cut(s) 119, 235
Sau3AI GATC 5 cut(s) 379, 466, 758, 1013, 1045
Sau96I GGNCC 1 cut(s) 303
SchI GAGTC 1 cut(s) 967
ScrFI CCNGG 2 cut(s) 315, 663
SduI GDGCHC 2 cut(s) 870, 1005
SfaNI GCATC 2 cut(s) 331, 1047
SfcI CTRYAG 1 cut(s) 144
Sfr274I CTCGAG 1 cut(s) 291
SlaI CTCGAG 1 cut(s) 291
SmiMI CAYNNNNRTG 2 cut(s) 266, 491
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 3 cut(s) 195, 384, 432
SsiI CCGC 2 cut(s) 137, 623
SspMI CTAG 1 cut(s) 725
SstI GAGCTC 2 cut(s) 870, 1005
StyD4I CCNGG 2 cut(s) 313, 661
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 528, 1112
TaqI TCGA 4 cut(s) 292, 382, 838, 1016
TasI AATT 3 cut(s) 195, 384, 432
TatI WGTACW 1 cut(s) 1128
TfiI GAWTC 3 cut(s) 580, 787, 802
Tru1I TTAA 4 cut(s) 158, 324, 366, 828
Tru9I TTAA 4 cut(s) 158, 324, 366, 828
TscAI CASTG 2 cut(s) 136, 709
TseFI GTSAC 2 cut(s) 275, 1106
TseI GCWGC 2 cut(s) 118, 234
Tsp45I GTSAC 2 cut(s) 275, 1106
TspDTI ATGAA 3 cut(s) 17, 140, 519
TspGWI ACGGA 1 cut(s) 684
TspRI CASTG 2 cut(s) 136, 709
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 100
XhoI CTCGAG 1 cut(s) 291
XmnI GAANNNNTTC 2 cut(s) 408, 561
XspI CTAG 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.