Rmu_sc0004194.1_g000003

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004194.1
OG0011877
Physical Location & Seq
Forward (+)
7323 .. 12024
4702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004194.1_g000003.1.cds

Sequence Viewer

Length: 1416 bp
atggcgagcagcaggagagctttgcagagtgtgttgggcttcaacagagtgatctggactggacggaggagcttcggggctgttcctcaagccagtgcctattcatcttctcagaccctcatcaactctgaatatgaacacagtgcccacaattaccacccgattccaattgtattctctcaagcgaagggatcatgcatatgggatcccgagggaaacagatatctggactttcttgcatcttactctgctgttaaccagggtcattgtcatccaaagatcatgaaggcattacaagaacaggcagaaaggctcactcttagttcccgagctttctataatgatagatttccagtatttgccgagtatctaacaagcatgtttgattatgatatggtgctgcctatgaacactggtgcggaagctgtagaaacagctttaaagttggcaaggaaatggggttatgagaagaaaaaaattccaaaagatgaggctattattgtctcgtgttgtggctgcttccatggtcgtacattggcagtcatttctatgagctgtgacaatgaggcaacccgaggtttttggcccttagtgccaggacatcttaaagttgattttggtgatgcagttggccttgaaaaaatctttaaagagaatggagatcgaattgctggatttctttttgaacccattcaaggagaggctggggttataattcctccagatggttatttgaaatctgtcagagatctatgcacaaaatataacattttgatgattgctgatgaaatacaatctggtttagcacggtcagggagaatgctggcttgtgattgggaagaagttcgcccagatgtagtgattctaggaaaagcattgggtggtggtgtgatacctgtaagtgcggtgcttgcagacaaagacattatgctctgtgtccgacctggagagcatggaagtacctttggtggtaatccgttggccagtgctgttgctattgcctcactagatgtaataagagatgagagacttgctgaaagatctgcccaaatgggagaagagctgaggaatcagctaaacaagattcagcagaagtacccaaactacattaaggaagttcgaggaagaggtttgttcaatgctgtggagctcaatagcaaaaacttgtcccctgtttctgcttatgatatctgtctaaagttgaaggagagaggagtacttgccaagccaactcatgatactattatcagattgactcctccactctccatgagtttggaagagctccaagaaggatcgaaggcaatctcagacgttctggaacatgatctacctaagatgcagaaggaaaaaccagaaaacatctcttcaactgcttccaacatatgtgaccgttgtggacgaaacttgtactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002376 GO:0003674 GO:0003824 GO:0004587 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006520 GO:0006525 GO:0006527 GO:0006536 GO:0006560 GO:0006561 GO:0006591 GO:0006593 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006972 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008483 GO:0008652 GO:0009056 GO:0009058 GO:0009063 GO:0009064 GO:0009065 GO:0009084 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009628 GO:0009651 GO:0009814 GO:0009816 GO:0009987 GO:0012501 GO:0016053 GO:0016054 GO:0016740 GO:0016769 GO:0018130 GO:0019544 GO:0019752 GO:0019842 GO:0030170 GO:0031974 GO:0033554 GO:0034050 GO:0036094 GO:0042538 GO:0042742 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046394 GO:0046395 GO:0046483 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051640 GO:0051641 GO:0051646 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070279 GO:0071704 GO:0097159 GO:0098542 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1901607
KEGG Pathways
Metabolic & Signaling
ko00330 ko01100 ko01110 ko01130 map00330 map01100 map01110 map01130
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

471

Amino Acids

52.12

Weight (kDa)

6.8

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011877)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G46180
fragaria_vesca FvH4_3g05240 FvH4_3g05240 FvH4_3g05240 FvH4_3g05240
malus_domestica MD05G1281300.v1.1 MD10G1260100.v1.1
prunus_persica Prupe.4G083300_v2.0.a1 Prupe.4G083300_v2.0.a1
pyrus_communis pycom10g21610
rosa_chinensis RchiOBHm_Chr5g0014471
rosa_laevigata RLG00000032113
rosa_multiflora Rmu_sc0004194.1_g000003
rosa_roxburghii Rroxscaffold_1G00062100
rosa_rugosa Rorug05G0018400
rosa_samantha Rh5AG113500 Rh5CG122000 Rh5DG109300
rosa_wichuraiana Rw5G009850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 713
AciI CCGC 2 cut(s) 419, 905
AclWI GGATC 4 cut(s) 199, 200, 213, 1303
AcoI YGGCCR 1 cut(s) 981
AcsI RAATTY 1 cut(s) 477
AfaI GTAC 5 cut(s) 532, 961, 1097, 1218, 1412
AfiI CCNNNNNNNGG 2 cut(s) 695, 725
AgsI TTSAA 8 cut(s) 43, 638, 686, 695, 736, 1138, 1204, 1371
AjnI CCWGG 3 cut(s) 258, 595, 943
Alw21I GWGCWC 2 cut(s) 1152, 1287
Alw26I GTCTC 2 cut(s) 508, 1021
AlwI GGATC 4 cut(s) 199, 200, 213, 1303
Ama87I CYCGRG 3 cut(s) 209, 327, 573
AoxI GGCC 3 cut(s) 584, 631, 981
ApeKI GCWGC 3 cut(s) 9, 400, 516
ApoI RAATTY 1 cut(s) 477
Asp700I GAANNNNTTC 2 cut(s) 690, 843
AspS9I GGNCC 1 cut(s) 585
AsuHPI GGTGA 1 cut(s) 632
AvaI CYCGRG 3 cut(s) 209, 327, 573
BaeGI GKGCMC 1 cut(s) 148
BalI TGGCCA 1 cut(s) 983
BamHI GGATCC 1 cut(s) 205
BanII GRGCYC 2 cut(s) 1152, 1287
BauI CACGAG 1 cut(s) 505
Bbv12I GWGCWC 2 cut(s) 1152, 1287
BbvCI CCTCAGC 1 cut(s) 1064
BbvI GCAGC 3 cut(s) 21, 387, 503
BccI CCATC 1 cut(s) 719
BciT130I CCWGG 3 cut(s) 260, 597, 945
BcoDI GTCTC 2 cut(s) 508, 1021
BfaI CTAG 2 cut(s) 866, 1007
BfmI CTRYAG 1 cut(s) 426
BglII AGATCT 2 cut(s) 748, 1040
BisI GCNGC 3 cut(s) 10, 401, 517
BlsI GCNGC 3 cut(s) 11, 402, 518
BmcAI AGTACT 1 cut(s) 1218
Bme1390I CCNGG 3 cut(s) 260, 597, 945
BmeT110I CYCGRG 3 cut(s) 209, 327, 573
BmgT120I GGNCC 1 cut(s) 585
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 3 cut(s) 260, 597, 945
BmsI GCATC 3 cut(s) 248, 613, 1329
BpmI CTGGAG 2 cut(s) 705, 966
Bpu10I CCTNAGC 1 cut(s) 1064
BpuEI CTTGAG 2 cut(s) 72, 165
BsaJI CCNNGG 4 cut(s) 210, 259, 523, 574
Bsc4I CCNNNNNNNGG 2 cut(s) 695, 725
Bse1I ACTGG 5 cut(s) 64, 93, 353, 418, 984
BseBI CCWGG 3 cut(s) 260, 597, 945
BseDI CCNNGG 4 cut(s) 210, 259, 523, 574
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 2 cut(s) 695, 725
BseMII CTCAG 3 cut(s) 125, 1055, 1323
BseNI ACTGG 5 cut(s) 64, 93, 353, 418, 984
BseRI GAGGAG 3 cut(s) 82, 1227, 1248
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 3 cut(s) 21, 387, 503
BseYI CCCAGC 1 cut(s) 704
BshFI GGCC 3 cut(s) 586, 633, 983
BsiHKAI GWGCWC 2 cut(s) 1152, 1287
BsiHKCI CYCGRG 3 cut(s) 209, 327, 573
BslFI GGGAC 1 cut(s) 1153
BslI CCNNNNNNNGG 2 cut(s) 695, 725
BsmAI GTCTC 2 cut(s) 508, 1021
BsmFI GGGAC 1 cut(s) 1153
BsmI GAATGC 1 cut(s) 825
BsnI GGCC 3 cut(s) 586, 633, 983
BsoBI CYCGRG 3 cut(s) 209, 327, 573
Bsp1286I GDGCHC 3 cut(s) 148, 1152, 1287
Bsp143I GATC 9 cut(s) 51, 191, 205, 279, 661, 748, 1040, 1295, 1327
Bsp19I CCATGG 1 cut(s) 523
BspACI CCGC 2 cut(s) 419, 905
BspANI GGCC 3 cut(s) 586, 633, 983
BspCNI CTCAG 3 cut(s) 124, 1056, 1322
BspHI TCATGA 2 cut(s) 282, 1234
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 4 cut(s) 199, 200, 213, 1303
BspQI GCTCTTC 2 cut(s) 1053, 1275
BsrI ACTGG 5 cut(s) 64, 93, 353, 418, 984
BssECI CCNNGG 4 cut(s) 210, 259, 523, 574
BssMI GATC 9 cut(s) 51, 191, 205, 279, 661, 748, 1040, 1295, 1327
BssSI CACGAG 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 523
Bst2BI CACGAG 1 cut(s) 505
Bst2UI CCWGG 3 cut(s) 260, 597, 945
Bst4CI ACNGT 3 cut(s) 143, 810, 1394
Bst6I CTCTTC 4 cut(s) 1053, 1120, 1275, 1372
BstC8I GCNNGC 3 cut(s) 7, 825, 912
BstDEI CTNAG 6 cut(s) 111, 320, 589, 1064, 1309, 1335
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 9 cut(s) 54, 194, 208, 282, 664, 751, 1043, 1298, 1330
BstMAI GTCTC 2 cut(s) 508, 1021
BstMBI GATC 9 cut(s) 51, 191, 205, 279, 661, 748, 1040, 1295, 1327
BstMWI GCNNNNNNNGC 2 cut(s) 592, 911
BstNI CCWGG 3 cut(s) 260, 597, 945
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 3 cut(s) 258, 595, 943
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 148
BstV1I GCAGC 3 cut(s) 21, 387, 503
BstX2I RGATCY 3 cut(s) 205, 748, 1040
BstXI CCANNNNNNTGG 1 cut(s) 1276
BstYI RGATCY 3 cut(s) 205, 748, 1040
BsuRI GGCC 3 cut(s) 586, 633, 983
BtgI CCRYGG 1 cut(s) 523
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 4 cut(s) 100, 148, 411, 991
Cac8I GCNNGC 3 cut(s) 7, 825, 912
CciI TCATGA 2 cut(s) 282, 1234
Cfr13I GGNCC 1 cut(s) 585
Csp6I GTAC 5 cut(s) 531, 960, 1096, 1217, 1411
CviAII CATG 8 cut(s) 195, 283, 379, 524, 953, 1235, 1270, 1325
CviQI GTAC 5 cut(s) 531, 960, 1096, 1217, 1411
DdeI CTNAG 6 cut(s) 111, 320, 589, 1064, 1309, 1335
DpnI GATC 9 cut(s) 53, 193, 207, 281, 663, 750, 1042, 1297, 1329
DpnII GATC 9 cut(s) 51, 191, 205, 279, 661, 748, 1040, 1295, 1327
DraI TTTAAA 2 cut(s) 441, 649
EaeI YGGCCR 1 cut(s) 981
Eam1104I CTCTTC 4 cut(s) 1053, 1120, 1275, 1372
EarI CTCTTC 4 cut(s) 1053, 1120, 1275, 1372
Ecl136II GAGCTC 2 cut(s) 1150, 1285
Eco130I CCWWGG 1 cut(s) 523
Eco24I GRGCYC 2 cut(s) 1152, 1287
Eco32I GATATC 2 cut(s) 224, 1189
Eco53kI GAGCTC 2 cut(s) 1150, 1285
Eco88I CYCGRG 3 cut(s) 209, 327, 573
EcoICRI GAGCTC 2 cut(s) 1150, 1285
EcoRII CCWGG 3 cut(s) 258, 595, 943
EcoRV GATATC 2 cut(s) 224, 1189
EcoT14I CCWWGG 1 cut(s) 523
EcoT22I ATGCAT 1 cut(s) 200
EcoT38I GRGCYC 2 cut(s) 1152, 1287
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 8 cut(s) 198, 286, 382, 527, 956, 1238, 1273, 1328
FaqI GGGAC 1 cut(s) 1153
FatI CATG 8 cut(s) 194, 282, 378, 523, 952, 1234, 1269, 1324
FauNDI CATATG 2 cut(s) 200, 1385
Fnu4HI GCNGC 3 cut(s) 10, 401, 517
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 2 cut(s) 1152, 1287
Fsp4HI GCNGC 3 cut(s) 10, 401, 517
FspBI CTAG 2 cut(s) 866, 1007
GluI GCNGC 3 cut(s) 10, 401, 517
GsaI CCCAGC 1 cut(s) 708
GsuI CTGGAG 2 cut(s) 705, 966
HaeIII GGCC 3 cut(s) 586, 633, 983
Hin1II CATG 8 cut(s) 198, 286, 382, 527, 956, 1238, 1273, 1328
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 5 cut(s) 163, 862, 1069, 1084, 1255
HpaI GTTAAC 1 cut(s) 256
HphI GGTGA 1 cut(s) 632
Hpy166II GTNNAC 2 cut(s) 256, 1400
Hpy188I TCNGA 6 cut(s) 114, 130, 746, 941, 1250, 1312
Hpy188III TCNNGA 8 cut(s) 55, 209, 227, 283, 327, 722, 1235, 1319
Hpy8I GTNNAC 2 cut(s) 256, 1400
HpyAV CCTTC 6 cut(s) 181, 280, 1198, 1286, 1294, 1339
HpyCH4III ACNGT 3 cut(s) 143, 810, 1394
HpyCH4IV ACGT 1 cut(s) 1314
HpyCH4V TGCA 7 cut(s) 25, 198, 239, 626, 756, 914, 1342
HpyF10VI GCNNNNNNNGC 2 cut(s) 592, 911
HpyF3I CTNAG 6 cut(s) 111, 320, 589, 1064, 1309, 1335
HpySE526I ACGT 1 cut(s) 1314
Hsp92II CATG 8 cut(s) 198, 286, 382, 527, 956, 1238, 1273, 1328
KspAI GTTAAC 1 cut(s) 256
Kzo9I GATC 9 cut(s) 51, 191, 205, 279, 661, 748, 1040, 1295, 1327
LguI GCTCTTC 2 cut(s) 1053, 1275
LmnI GCTCC 3 cut(s) 69, 1147, 1290
Lsp1109I GCAGC 3 cut(s) 21, 387, 503
LweI GCATC 3 cut(s) 248, 613, 1329
MaeI CTAG 2 cut(s) 866, 1007
MaeII ACGT 1 cut(s) 1314
MaeIII GTNAC 2 cut(s) 557, 1388
MalI GATC 9 cut(s) 53, 193, 207, 281, 663, 750, 1042, 1297, 1329
MboI GATC 9 cut(s) 51, 191, 205, 279, 661, 748, 1040, 1295, 1327
MboII GAAGA 7 cut(s) 99, 481, 851, 1070, 1137, 1292, 1359
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 3 cut(s) 205, 748, 1040
MhlI GDGCHC 3 cut(s) 148, 1152, 1287
MlsI TGGCCA 1 cut(s) 983
MluCI AATT 5 cut(s) 151, 168, 477, 666, 714
MluNI TGGCCA 1 cut(s) 983
MlyI GAGTC 1 cut(s) 1249
MmeI TCCRAC 2 cut(s) 964, 1404
Mox20I TGGCCA 1 cut(s) 983
Mph1103I ATGCAT 1 cut(s) 200
MroXI GAANNNNTTC 2 cut(s) 690, 843
MscI TGGCCA 1 cut(s) 983
MseI TTAA 5 cut(s) 255, 440, 606, 648, 1110
MslI CAYNNNNRTG 3 cut(s) 199, 548, 773
Msp20I TGGCCA 1 cut(s) 983
MspR9I CCNGG 3 cut(s) 260, 597, 945
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 825
MvaI CCWGG 3 cut(s) 260, 597, 945
MwoI GCNNNNNNNGC 2 cut(s) 592, 911
NcoI CCATGG 1 cut(s) 523
NdeI CATATG 2 cut(s) 200, 1385
NdeII GATC 9 cut(s) 51, 191, 205, 279, 661, 748, 1040, 1295, 1327
NlaIII CATG 8 cut(s) 198, 286, 382, 527, 956, 1238, 1273, 1328
NlaIV GGNNCC 1 cut(s) 207
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 2 cut(s) 557, 1388
NsiI ATGCAT 1 cut(s) 200
NspI RCATGY 1 cut(s) 382
PagI TCATGA 2 cut(s) 282, 1234
PciSI GCTCTTC 2 cut(s) 1053, 1275
PctI GAATGC 1 cut(s) 825
PdmI GAANNNNTTC 2 cut(s) 690, 843
PfeI GAWTC 4 cut(s) 163, 862, 1069, 1084
PkrI GCNGC 3 cut(s) 11, 402, 518
PleI GAGTC 1 cut(s) 1249
PpsI GAGTC 1 cut(s) 1249
PsiI TTATAA 1 cut(s) 713
Psp124BI GAGCTC 2 cut(s) 1152, 1287
Psp6I CCWGG 3 cut(s) 258, 595, 943
PspFI CCCAGC 1 cut(s) 704
PspGI CCWGG 3 cut(s) 258, 595, 943
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 585
PsrI GAACNNNNNNTAC 2 cut(s) 1314, 1346
PsuI RGATCY 3 cut(s) 205, 748, 1040
RsaI GTAC 5 cut(s) 532, 961, 1097, 1218, 1412
RsaNI GTAC 5 cut(s) 531, 960, 1096, 1217, 1411
RseI CAYNNNNRTG 3 cut(s) 199, 548, 773
SacI GAGCTC 2 cut(s) 1152, 1287
SapI GCTCTTC 2 cut(s) 1053, 1275
SaqAI TTAA 5 cut(s) 255, 440, 606, 648, 1110
SatI GCNGC 3 cut(s) 10, 401, 517
Sau3AI GATC 9 cut(s) 51, 191, 205, 279, 661, 748, 1040, 1295, 1327
Sau96I GGNCC 1 cut(s) 585
ScaI AGTACT 1 cut(s) 1218
SchI GAGTC 1 cut(s) 1249
ScrFI CCNGG 3 cut(s) 260, 597, 945
SduI GDGCHC 3 cut(s) 148, 1152, 1287
SfaNI GCATC 3 cut(s) 248, 613, 1329
SfcI CTRYAG 1 cut(s) 426
SmiMI CAYNNNNRTG 3 cut(s) 199, 548, 773
SmlI CTYRAG 2 cut(s) 87, 180
SmoI CTYRAG 2 cut(s) 87, 180
Sse9I AATT 5 cut(s) 151, 168, 477, 666, 714
SsiI CCGC 2 cut(s) 419, 905
SspMI CTAG 2 cut(s) 866, 1007
SstI GAGCTC 2 cut(s) 1152, 1287
StyD4I CCNGG 3 cut(s) 258, 595, 943
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 3 cut(s) 143, 810, 1394
TaiI ACGT 1 cut(s) 1317
TaqI TCGA 3 cut(s) 664, 1120, 1298
TasI AATT 5 cut(s) 151, 168, 477, 666, 714
TatI WGTACW 2 cut(s) 1216, 1410
TfiI GAWTC 4 cut(s) 163, 862, 1069, 1084
Tru1I TTAA 5 cut(s) 255, 440, 606, 648, 1110
Tru9I TTAA 5 cut(s) 255, 440, 606, 648, 1110
TscAI CASTG 4 cut(s) 100, 148, 418, 991
TseFI GTSAC 2 cut(s) 557, 1388
TseI GCWGC 3 cut(s) 9, 400, 516
Tsp45I GTSAC 2 cut(s) 557, 1388
TspDTI ATGAA 5 cut(s) 93, 150, 299, 422, 801
TspGWI ACGGA 2 cut(s) 79, 966
TspRI CASTG 4 cut(s) 100, 148, 418, 991
XapI RAATTY 1 cut(s) 477
XceI RCATGY 1 cut(s) 382
XmnI GAANNNNTTC 2 cut(s) 690, 843
XspI CTAG 2 cut(s) 866, 1007
ZrmI AGTACT 1 cut(s) 1218
Zsp2I ATGCAT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.