FvH4_3g05790

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016780
Physical Location & Seq
Forward (+)
3383687 .. 3385733
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05790.t1

Sequence Viewer

Length: 762 bp
ATGGAAGAAGAAGAGCCCAAGAAGAGGAGGGTGGTGGTGGAATCTCTGGGATGGCTGACGGAGTCGACCATCATGCCCAAGAAGCACCGCGCCATCGCCGGCGTCGGAGCCTCTTCCATCATGGAGCTCAAGGCCCAGCTCTACCAGTCTCAAGAAGATTCCAAGAAGTCCAAGGACCTCGCCGGCTCTGACGCCGACTTCCTCCGCGCCAAGAAGAAGATCACCGCACACGACGCCTTCTCCGCCAAGAACTCCGGCGTCGACGCCCGGGCCCACAAGGACAAGCTTGAGCTGAAGGCAGTTAAGGATGGATCAGCAAGCTATGCAGCCTTGGAGAAAAAGGCTGCATTGTATGAGAAGCTAGCGAGGGGGGAGCTATCCGATGAGGAAGACAAGGAAAAGTATTGTGTGGATTTCTTTGTTAAGAGACATGAGCAGGATGAGTCGGAGCAGACTCAGCGTCACGATTCGTCTGCTGTCGCACCACTGGAAGATCAAGATGGCGAGACTGATCTTTCTACGTTGTTTAGCAGAAAACCTGTGGGGCTTGGGCACGCAGGTGCGACATGGGACAATGATGAACACAAGCGATTTGTGAGGGAAGTTCATCAAGAAGCGAATCAAGCAAGAGAGAAAGCCTCGGAGCTCAAAGTACGCAGGCAAGAGCAGGCAACTGCTCGTCGTGAGAAGTTAAAACAAGCATACATCCGGAAACAGCTAGAGAAACTAAAAGCAGCAGCACCGAATAAGGAACAGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

254

Amino Acids

28.59

Weight (kDa)

8.38

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016780)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05790
malus_domestica MD10G1263800.v1.1
prunus_persica Prupe.4G078700_v2.0.a1
pyrus_communis pycom05g26480 pycom10g22000
rosa_chinensis RchiOBHm_Chr5g0013711
rosa_laevigata RLG00000032042
rosa_multiflora Rmu_sc0002573.1_g000001
rosa_roxburghii Rroxscaffold_1G00062900
rosa_rugosa Rorug05G0012500
rosa_samantha Rh5AG106800 Rh5BG102900 Rh5CG114800 Rh5DG101600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 548
AccI GTMKAC 2 cut(s) 65, 261
AccII CGCG 2 cut(s) 90, 207
AccIII TCCGGA 1 cut(s) 708
AciI CCGC 4 cut(s) 88, 205, 225, 243
AclWI GGATC 1 cut(s) 319
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 5 cut(s) 102, 192, 234, 258, 264
AfaI GTAC 1 cut(s) 654
AfiI CCNNNNNNNGG 1 cut(s) 24
AhdI GACNNNNNGTC 1 cut(s) 459
AleI CACNNNNGTG 1 cut(s) 558
AluBI AGCT 9 cut(s) 127, 139, 286, 292, 321, 361, 376, 646, 718
AluI AGCT 9 cut(s) 127, 139, 286, 292, 321, 361, 376, 646, 718
Alw21I GWGCWC 2 cut(s) 129, 648
Alw26I GTCTC 3 cut(s) 153, 421, 500
AlwI GGATC 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 267
Aor13HI TCCGGA 1 cut(s) 708
AoxI GGCC 2 cut(s) 132, 270
ApaI GGGCCC 1 cut(s) 274
ApeKI GCWGC 4 cut(s) 326, 344, 734, 737
AspLEI GCGC 2 cut(s) 92, 209
AspS9I GGNCC 4 cut(s) 133, 175, 270, 271
AsuC2I CCSGG 2 cut(s) 268, 269
AsuHPI GGTGA 1 cut(s) 214
AsuNHI GCTAGC 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 2 cut(s) 274, 555
BanII GRGCYC 4 cut(s) 18, 129, 274, 648
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 2 cut(s) 129, 648
BbvI GCAGC 4 cut(s) 331, 338, 746, 749
BccI CCATC 6 cut(s) 45, 77, 101, 125, 302, 494
BcgI CGANNNNNNTGC 4 cut(s) 55, 89, 455, 489
BcnI CCSGG 2 cut(s) 268, 269
BcoDI GTCTC 3 cut(s) 153, 421, 500
BfaI CTAG 2 cut(s) 362, 719
BfuAI ACCTGC 1 cut(s) 548
BisI GCNGC 4 cut(s) 327, 345, 735, 738
BlsI GCNGC 4 cut(s) 328, 346, 736, 739
Bme1390I CCNGG 2 cut(s) 268, 269
Bme18I GGWCC 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 459
BmeT110I CYCGRG 1 cut(s) 267
BmgT120I GGNCC 4 cut(s) 133, 175, 270, 271
BmiI GGNNCC 2 cut(s) 109, 272
BmrFI CCNGG 2 cut(s) 268, 269
BmtI GCTAGC 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpuEI CTTGAG 3 cut(s) 113, 135, 308
BpuMI CCSGG 2 cut(s) 268, 269
BsaHI GRCGYC 5 cut(s) 102, 192, 234, 258, 264
BsaJI CCNNGG 4 cut(s) 171, 267, 330, 639
BsaWI WCCGGW 1 cut(s) 708
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse118I RCCGGY 2 cut(s) 98, 182
Bse1I ACTGG 2 cut(s) 145, 492
BseAI TCCGGA 1 cut(s) 708
BseDI CCNNGG 4 cut(s) 171, 267, 330, 639
BseGI GGATG 4 cut(s) 56, 313, 445, 705
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 2 cut(s) 145, 492
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 2 cut(s) 274, 555
BseXI GCAGC 4 cut(s) 331, 338, 746, 749
BseYI CCCAGC 1 cut(s) 135
Bsh1236I CGCG 2 cut(s) 90, 207
BshFI GGCC 2 cut(s) 134, 272
BsiHKAI GWGCWC 2 cut(s) 129, 648
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 5 cut(s) 99, 183, 255, 268, 709
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 3 cut(s) 153, 421, 500
BsmFI GGGAC 1 cut(s) 584
BsnI GGCC 2 cut(s) 134, 272
BsoBI CYCGRG 1 cut(s) 267
Bsp120I GGGCCC 1 cut(s) 270
Bsp1286I GDGCHC 5 cut(s) 18, 129, 274, 555, 648
Bsp13I TCCGGA 1 cut(s) 708
Bsp143I GATC 4 cut(s) 219, 311, 493, 511
BspACI CCGC 4 cut(s) 88, 205, 225, 243
BspANI GGCC 2 cut(s) 134, 272
BspCNI CTCAG 1 cut(s) 469
BspEI TCCGGA 1 cut(s) 708
BspFNI CGCG 2 cut(s) 90, 207
BspLI GGNNCC 2 cut(s) 109, 272
BspMI ACCTGC 1 cut(s) 548
BspOI GCTAGC 1 cut(s) 365
BspPI GGATC 1 cut(s) 319
BspQI GCTCTTC 1 cut(s) 6
BsrFI RCCGGY 2 cut(s) 98, 182
BsrI ACTGG 2 cut(s) 145, 492
BssAI RCCGGY 2 cut(s) 98, 182
BssECI CCNNGG 4 cut(s) 171, 267, 330, 639
BssMI GATC 4 cut(s) 219, 311, 493, 511
BssNI GRCGYC 5 cut(s) 102, 192, 234, 258, 264
BssT1I CCWWGG 2 cut(s) 171, 330
Bst6I CTCTTC 3 cut(s) 6, 17, 118
BstACI GRCGYC 5 cut(s) 102, 192, 234, 258, 264
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 7 cut(s) 100, 184, 319, 363, 555, 659, 669
BstDEI CTNAG 1 cut(s) 456
BstF5I GGATG 4 cut(s) 56, 313, 445, 705
BstFNI CGCG 2 cut(s) 90, 207
BstHHI GCGC 2 cut(s) 92, 209
BstKTI GATC 4 cut(s) 222, 314, 496, 514
BstMAI GTCTC 3 cut(s) 153, 421, 500
BstMBI GATC 4 cut(s) 219, 311, 493, 511
BstMWI GCNNNNNNNGC 6 cut(s) 82, 233, 242, 323, 457, 623
BstSCI CCNGG 2 cut(s) 266, 267
BstSLI GKGCMC 2 cut(s) 274, 555
BstUI CGCG 2 cut(s) 90, 207
BstV1I GCAGC 4 cut(s) 331, 338, 746, 749
BstV2I GAAGAC 1 cut(s) 396
BsuRI GGCC 2 cut(s) 134, 272
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 4 cut(s) 56, 313, 445, 705
BtsIMutI CAGTG 1 cut(s) 485
BveI ACCTGC 1 cut(s) 548
Cac8I GCNNGC 7 cut(s) 100, 184, 319, 363, 555, 659, 669
CfoI GCGC 2 cut(s) 92, 209
Cfr10I RCCGGY 2 cut(s) 98, 182
Cfr13I GGNCC 4 cut(s) 133, 175, 270, 271
Cfr9I CCCGGG 1 cut(s) 267
CseI GACGC 6 cut(s) 91, 200, 242, 247, 272, 449
Csp6I GTAC 1 cut(s) 653
CviAII CATG 4 cut(s) 73, 121, 431, 567
CviQI GTAC 1 cut(s) 653
DdeI CTNAG 1 cut(s) 456
DpnI GATC 4 cut(s) 221, 313, 495, 513
DpnII GATC 4 cut(s) 219, 311, 493, 511
DriI GACNNNNNGTC 1 cut(s) 459
Eam1104I CTCTTC 3 cut(s) 6, 17, 118
Eam1105I GACNNNNNGTC 1 cut(s) 459
EarI CTCTTC 3 cut(s) 6, 17, 118
EciI GGCGGA 1 cut(s) 232
Ecl136II GAGCTC 2 cut(s) 127, 646
Eco130I CCWWGG 2 cut(s) 171, 330
Eco24I GRGCYC 4 cut(s) 18, 129, 274, 648
Eco47I GGWCC 1 cut(s) 175
Eco53kI GAGCTC 2 cut(s) 127, 646
Eco57I CTGAAG 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 267
EcoICRI GAGCTC 2 cut(s) 127, 646
EcoO109I RGGNCCY 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 171, 330
EcoT38I GRGCYC 4 cut(s) 18, 129, 274, 648
ErhI CCWWGG 2 cut(s) 171, 330
FaeI CATG 4 cut(s) 76, 124, 434, 570
FaiI YATR 8 cut(s) 74, 122, 324, 354, 432, 568, 703, 760
FaqI GGGAC 1 cut(s) 584
FatI CATG 4 cut(s) 72, 120, 430, 566
FblI GTMKAC 2 cut(s) 65, 261
Fnu4HI GCNGC 4 cut(s) 327, 345, 735, 738
FokI GGATG 4 cut(s) 63, 320, 452, 692
FriOI GRGCYC 4 cut(s) 18, 129, 274, 648
Fsp4HI GCNGC 4 cut(s) 327, 345, 735, 738
FspBI CTAG 2 cut(s) 362, 719
GlaI GCGC 2 cut(s) 91, 208
GluI GCNGC 4 cut(s) 327, 345, 735, 738
GsaI CCCAGC 1 cut(s) 139
HaeIII GGCC 2 cut(s) 134, 272
HapII CCGG 5 cut(s) 99, 183, 255, 268, 709
HgaI GACGC 6 cut(s) 91, 200, 242, 247, 272, 449
HhaI GCGC 2 cut(s) 92, 209
Hin1I GRCGYC 5 cut(s) 102, 192, 234, 258, 264
Hin1II CATG 4 cut(s) 76, 124, 434, 570
Hin6I GCGC 2 cut(s) 90, 207
HinP1I GCGC 2 cut(s) 90, 207
HincII GTYRAC 2 cut(s) 66, 262
HindII GTYRAC 2 cut(s) 66, 262
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 7 cut(s) 41, 62, 158, 443, 454, 467, 619
HpaII CCGG 5 cut(s) 99, 183, 255, 268, 709
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 66, 262
Hpy188I TCNGA 5 cut(s) 107, 190, 382, 448, 643
Hpy188III TCNNGA 6 cut(s) 152, 464, 497, 611, 683, 709
Hpy8I GTNNAC 2 cut(s) 66, 262
Hpy99I CGWCG 5 cut(s) 107, 236, 263, 266, 684
HpyAV CCTTC 2 cut(s) 247, 289
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 2 cut(s) 326, 347
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 233, 242, 323, 457, 623
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 1 cut(s) 521
Hsp92I GRCGYC 5 cut(s) 102, 192, 234, 258, 264
Hsp92II CATG 4 cut(s) 76, 124, 434, 570
HspAI GCGC 2 cut(s) 90, 207
Kpn2I TCCGGA 1 cut(s) 708
KroI GCCGGC 2 cut(s) 98, 182
KroNI GCCGGC 2 cut(s) 100, 184
Kzo9I GATC 4 cut(s) 219, 311, 493, 511
LguI GCTCTTC 1 cut(s) 6
LmnI GCTCC 5 cut(s) 107, 124, 373, 448, 643
Lsp1109I GCAGC 4 cut(s) 331, 338, 746, 749
MaeI CTAG 2 cut(s) 362, 719
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 1 cut(s) 461
MalI GATC 4 cut(s) 221, 313, 495, 513
MboI GATC 4 cut(s) 219, 311, 493, 511
MhlI GDGCHC 5 cut(s) 18, 129, 274, 555, 648
MlyI GAGTC 3 cut(s) 71, 448, 452
MmeI TCCRAC 2 cut(s) 85, 426
MnlI CCTC 9 cut(s) 18, 21, 121, 188, 212, 360, 379, 591, 649
MreI CGCCGGCG 1 cut(s) 98
MroI TCCGGA 1 cut(s) 708
MroNI GCCGGC 2 cut(s) 98, 182
MseI TTAA 3 cut(s) 303, 423, 692
MslI CAYNNNNRTG 1 cut(s) 558
MspI CCGG 5 cut(s) 99, 183, 255, 268, 709
MspR9I CCNGG 2 cut(s) 268, 269
MvnI CGCG 2 cut(s) 90, 207
MwoI GCNNNNNNNGC 6 cut(s) 82, 233, 242, 323, 457, 623
NaeI GCCGGC 2 cut(s) 100, 184
NciI CCSGG 2 cut(s) 268, 269
NdeII GATC 4 cut(s) 219, 311, 493, 511
NgoMIV GCCGGC 2 cut(s) 98, 182
NheI GCTAGC 1 cut(s) 361
NlaIII CATG 4 cut(s) 76, 124, 434, 570
NlaIV GGNNCC 2 cut(s) 109, 272
NmuCI GTSAC 1 cut(s) 461
OliI CACNNNNGTG 1 cut(s) 558
PaqCI CACCTGC 1 cut(s) 548
PciSI GCTCTTC 1 cut(s) 6
PdiI GCCGGC 2 cut(s) 100, 184
PfeI GAWTC 4 cut(s) 41, 158, 467, 619
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 4 cut(s) 328, 346, 736, 739
PleI GAGTC 3 cut(s) 70, 448, 451
PpsI GAGTC 3 cut(s) 70, 448, 451
PpuMI RGGWCCY 1 cut(s) 175
Psp124BI GAGCTC 2 cut(s) 129, 648
Psp5II RGGWCCY 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 135
PspN4I GGNNCC 2 cut(s) 109, 272
PspOMI GGGCCC 1 cut(s) 270
PspPI GGNCC 4 cut(s) 133, 175, 270, 271
PspPPI RGGWCCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 61
RsaI GTAC 1 cut(s) 654
RsaNI GTAC 1 cut(s) 653
RseI CAYNNNNRTG 1 cut(s) 558
SacI GAGCTC 2 cut(s) 129, 648
SalI GTCGAC 2 cut(s) 64, 260
SapI GCTCTTC 1 cut(s) 6
SaqAI TTAA 3 cut(s) 303, 423, 692
SatI GCNGC 4 cut(s) 327, 345, 735, 738
Sau3AI GATC 4 cut(s) 219, 311, 493, 511
Sau96I GGNCC 4 cut(s) 133, 175, 270, 271
SchI GAGTC 3 cut(s) 71, 448, 452
ScrFI CCNGG 2 cut(s) 268, 269
SduI GDGCHC 5 cut(s) 18, 129, 274, 555, 648
SgrAI CRCCGGYG 1 cut(s) 98
SgrDI CGTCGACG 1 cut(s) 260
SinI GGWCC 1 cut(s) 175
SmaI CCCGGG 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 3 cut(s) 128, 150, 287
SmoI CTYRAG 3 cut(s) 128, 150, 287
SrfI GCCCGGGC 1 cut(s) 269
SsiI CCGC 4 cut(s) 88, 205, 225, 243
SspMI CTAG 2 cut(s) 362, 719
SstI GAGCTC 2 cut(s) 129, 648
StyD4I CCNGG 2 cut(s) 266, 267
StyI CCWWGG 2 cut(s) 171, 330
TaiI ACGT 1 cut(s) 524
TaqI TCGA 2 cut(s) 65, 261
TfiI GAWTC 4 cut(s) 41, 158, 467, 619
Tru1I TTAA 3 cut(s) 303, 423, 692
Tru9I TTAA 3 cut(s) 303, 423, 692
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 4 cut(s) 326, 344, 734, 737
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 594, 596
TspGWI ACGGA 1 cut(s) 74
TspMI CCCGGG 1 cut(s) 267
TspRI CASTG 1 cut(s) 492
Tth111I GACNNNGTC 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 175
XmaI CCCGGG 1 cut(s) 267
XmiI GTMKAC 2 cut(s) 65, 261
XspI CTAG 2 cut(s) 362, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.