Prupe.4G078700_v2.0.a1

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016780
Physical Location & Seq
Reverse (-)
3820376 .. 3822639
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G078700.1

Sequence Viewer

Length: 930 bp
ATGAACCCAAATGGGCCGGCCCACATTATGTGGCGGTGGAGTCCATTACGAATCCACCACCACCCGCCCTCGCAAACCGAAACGAATTCAGATATTCCAATCAATCAAATTCAAACAGAAGAAGAAGAAAGCTACGTCACTGCCAACGATCTCAATCCTGAAATTGCAGAAATGGCGGAGGAGGAGACGAAGAAGAGAAGTGTGGTGGTGGAATCCTTGGGATGGCTAACGGAATCTTCAATTATGCCCAAGAAGCACCGCGCCATCGCCGGCGTCGGAGCCTCCTCGATAATGGAGCTCAAGGCCCAACTCTATAAGTCGCAAGAAGACTCCAAGAAGTCCAAGGAACTCGCCGGCTCAGAAGTCGAGTTCCACCGCGCCAAGAAGAAGATCACGTCACACGATCCCTTGTCCGCCAAGAACTCCGGCGTCGATGCCCGGGCCCACAAAGACAAGCTTGAGCTCAAAGCAGTTAATGACGGATCAGCTAGCTATGCAGCATTAGAGAGGAAGGCCGCATTGTATGATAAGCTAGTAAAGGGGGAGCTATCTGATGAGGAAGATAAGGAGAAGTATTGTGTGGATTTTTTTTGCAAGAGAGTTGACCAGGATGAACCGCAGCAAACTCAGCATTATGATTTGCCTGCTGTAGTATCTTCGGAGAATCAAGATGGTGAGAGTGATGCTTCCATGCTGTTTAGCATGAAACCGTTGGGGCTTGGGCGAGCAGCAGCAACAATGGACAATGATGTTTACAAGAGTTTTGTGAGGGAAGTACACGAAGAAGCAAATGTAGCGAGAGAGAAGGCATCTGAGCTCAAACAGCGCAGGGAAGAGCAAGCAGGGGCTCGTCGTGAGAAGTTAAAACAGGCATATATAAGGAAACAATTGGAGAAACTAAAAGCGGCATCCAACAAGGAACAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

310

Amino Acids

34.85

Weight (kDa)

6.0

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016780)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05790
malus_domestica MD10G1263800.v1.1
prunus_persica Prupe.4G078700_v2.0.a1
pyrus_communis pycom05g26480 pycom10g22000
rosa_chinensis RchiOBHm_Chr5g0013711
rosa_laevigata RLG00000032042
rosa_multiflora Rmu_sc0002573.1_g000001
rosa_roxburghii Rroxscaffold_1G00062900
rosa_rugosa Rorug05G0012500
rosa_samantha Rh5AG106800 Rh5BG102900 Rh5CG114800 Rh5DG101600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 261, 378
AciI CCGC 9 cut(s) 34, 65, 176, 259, 376, 414, 516, 617, 905
AclWI GGATC 2 cut(s) 398, 490
AcsI RAATTY 2 cut(s) 85, 108
AcyI GRCGYC 2 cut(s) 273, 429
AfaI GTAC 1 cut(s) 777
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 113, 240
AjiI CACGTC 1 cut(s) 396
AjnI CCWGG 1 cut(s) 606
AluBI AGCT 9 cut(s) 132, 298, 457, 463, 488, 492, 532, 547, 817
AluI AGCT 9 cut(s) 132, 298, 457, 463, 488, 492, 532, 547, 817
Alw21I GWGCWC 3 cut(s) 300, 465, 819
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 2 cut(s) 398, 490
Ama87I CYCGRG 1 cut(s) 438
AoxI GGCC 5 cut(s) 14, 18, 303, 441, 513
ApaI GGGCCC 1 cut(s) 445
ApeKI GCWGC 4 cut(s) 497, 619, 728, 731
ApoI RAATTY 2 cut(s) 85, 108
AspLEI GCGC 3 cut(s) 263, 380, 828
AspS9I GGNCC 5 cut(s) 14, 19, 304, 441, 442
AsuC2I CCSGG 2 cut(s) 439, 440
AsuHPI GGTGA 1 cut(s) 686
AsuNHI GCTAGC 1 cut(s) 488
AvaI CYCGRG 1 cut(s) 438
BaeGI GKGCMC 1 cut(s) 445
BanII GRGCYC 5 cut(s) 300, 445, 465, 819, 850
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 3 cut(s) 300, 465, 819
BbvI GCAGC 4 cut(s) 509, 631, 740, 743
BccI CCATC 3 cut(s) 216, 272, 665
BciT130I CCWGG 1 cut(s) 608
BcnI CCSGG 2 cut(s) 439, 440
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 2 cut(s) 489, 533
BfmI CTRYAG 1 cut(s) 648
BisI GCNGC 6 cut(s) 498, 516, 620, 729, 732, 906
BlsI GCNGC 6 cut(s) 499, 517, 621, 730, 733, 907
Bme1390I CCNGG 3 cut(s) 439, 440, 608
BmeT110I CYCGRG 1 cut(s) 438
BmgBI CACGTC 1 cut(s) 396
BmgT120I GGNCC 5 cut(s) 14, 19, 304, 441, 442
BmiI GGNNCC 2 cut(s) 280, 443
BmrFI CCNGG 3 cut(s) 439, 440, 608
BmsI GCATC 4 cut(s) 424, 673, 818, 917
BmtI GCTAGC 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 333
BpuEI CTTGAG 2 cut(s) 284, 479
BpuMI CCSGG 2 cut(s) 439, 440
BsaBI GATNNNNATC 1 cut(s) 153
BsaHI GRCGYC 2 cut(s) 273, 429
BsaJI CCNNGG 3 cut(s) 216, 342, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse118I RCCGGY 3 cut(s) 16, 269, 353
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 3 cut(s) 216, 342, 438
BseGI GGATG 3 cut(s) 227, 616, 908
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 3 cut(s) 372, 641, 804
BseRI GAGGAG 3 cut(s) 194, 197, 274
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 4 cut(s) 509, 631, 740, 743
Bsh1236I CGCG 2 cut(s) 261, 378
BshFI GGCC 5 cut(s) 16, 20, 305, 443, 515
BsiHKAI GWGCWC 3 cut(s) 300, 465, 819
BsiHKCI CYCGRG 1 cut(s) 438
BsiSI CCGG 5 cut(s) 17, 270, 354, 426, 439
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 5 cut(s) 16, 20, 305, 443, 515
BsoBI CYCGRG 1 cut(s) 438
Bsp120I GGGCCC 1 cut(s) 441
Bsp1286I GDGCHC 5 cut(s) 300, 445, 465, 819, 850
Bsp143I GATC 4 cut(s) 148, 390, 403, 482
BspACI CCGC 9 cut(s) 34, 65, 176, 259, 376, 414, 516, 617, 905
BspANI GGCC 5 cut(s) 16, 20, 305, 443, 515
BspCNI CTCAG 3 cut(s) 371, 640, 805
BspFNI CGCG 2 cut(s) 261, 378
BspLI GGNNCC 2 cut(s) 280, 443
BspOI GCTAGC 1 cut(s) 492
BspPI GGATC 2 cut(s) 398, 490
BspQI GCTCTTC 1 cut(s) 828
BsrFI RCCGGY 3 cut(s) 16, 269, 353
BssAI RCCGGY 3 cut(s) 16, 269, 353
BssECI CCNNGG 3 cut(s) 216, 342, 438
BssMI GATC 4 cut(s) 148, 390, 403, 482
BssNI GRCGYC 2 cut(s) 273, 429
BssT1I CCWWGG 2 cut(s) 216, 342
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 1 cut(s) 711
Bst6I CTCTTC 2 cut(s) 188, 828
BstACI GRCGYC 2 cut(s) 273, 429
BstC8I GCNNGC 7 cut(s) 18, 271, 355, 490, 645, 726, 840
BstDEI CTNAG 3 cut(s) 358, 627, 813
BstF5I GGATG 3 cut(s) 227, 616, 908
BstFNI CGCG 2 cut(s) 261, 378
BstHHI GCGC 3 cut(s) 263, 380, 828
BstKTI GATC 4 cut(s) 151, 393, 406, 485
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 4 cut(s) 148, 390, 403, 482
BstMWI GCNNNNNNNGC 6 cut(s) 173, 253, 494, 628, 794, 823
BstNI CCWGG 1 cut(s) 608
BstSCI CCNGG 3 cut(s) 437, 438, 606
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 2 cut(s) 261, 378
BstV1I GCAGC 4 cut(s) 509, 631, 740, 743
BstV2I GAAGAC 1 cut(s) 333
BsuRI GGCC 5 cut(s) 16, 20, 305, 443, 515
BtgZI GCGATG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 396
BtsCI GGATG 3 cut(s) 227, 616, 908
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 7 cut(s) 18, 271, 355, 490, 645, 726, 840
CfoI GCGC 3 cut(s) 263, 380, 828
Cfr10I RCCGGY 3 cut(s) 16, 269, 353
Cfr13I GGNCC 5 cut(s) 14, 19, 304, 441, 442
Cfr9I CCCGGG 1 cut(s) 438
CseI GACGC 2 cut(s) 262, 418
Csp6I GTAC 1 cut(s) 776
CviAII CATG 2 cut(s) 691, 703
CviQI GTAC 1 cut(s) 776
DdeI CTNAG 3 cut(s) 358, 627, 813
DpnI GATC 4 cut(s) 150, 392, 405, 484
DpnII GATC 4 cut(s) 148, 390, 403, 482
Eam1104I CTCTTC 2 cut(s) 188, 828
EarI CTCTTC 2 cut(s) 188, 828
EciI GGCGGA 2 cut(s) 191, 403
Ecl136II GAGCTC 3 cut(s) 298, 463, 817
Eco130I CCWWGG 2 cut(s) 216, 342
Eco24I GRGCYC 5 cut(s) 300, 445, 465, 819, 850
Eco53kI GAGCTC 3 cut(s) 298, 463, 817
Eco88I CYCGRG 1 cut(s) 438
EcoICRI GAGCTC 3 cut(s) 298, 463, 817
EcoRI GAATTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 606
EcoT14I CCWWGG 2 cut(s) 216, 342
EcoT38I GRGCYC 5 cut(s) 300, 445, 465, 819, 850
ErhI CCWWGG 2 cut(s) 216, 342
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 2 cut(s) 694, 706
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FatI CATG 2 cut(s) 690, 702
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 6 cut(s) 498, 516, 620, 729, 732, 906
FokI GGATG 3 cut(s) 234, 623, 895
FriOI GRGCYC 5 cut(s) 300, 445, 465, 819, 850
FseI GGCCGGCC 1 cut(s) 20
Fsp4HI GCNGC 6 cut(s) 498, 516, 620, 729, 732, 906
FspBI CTAG 2 cut(s) 489, 533
GlaI GCGC 3 cut(s) 262, 379, 827
GluI GCNGC 6 cut(s) 498, 516, 620, 729, 732, 906
HaeIII GGCC 5 cut(s) 16, 20, 305, 443, 515
HapII CCGG 5 cut(s) 17, 270, 354, 426, 439
HgaI GACGC 2 cut(s) 262, 418
HhaI GCGC 3 cut(s) 263, 380, 828
Hin1I GRCGYC 2 cut(s) 273, 429
Hin1II CATG 2 cut(s) 694, 706
Hin6I GCGC 3 cut(s) 261, 378, 826
HinP1I GCGC 3 cut(s) 261, 378, 826
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 6 cut(s) 40, 51, 212, 233, 329, 664
HpaII CCGG 5 cut(s) 17, 270, 354, 426, 439
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 3 cut(s) 604, 754, 778
Hpy188I TCNGA 6 cut(s) 91, 278, 361, 553, 661, 814
Hpy188III TCNNGA 3 cut(s) 158, 668, 854
Hpy8I GTNNAC 3 cut(s) 604, 754, 778
Hpy99I CGWCG 3 cut(s) 278, 434, 855
HpyAV CCTTC 2 cut(s) 505, 799
HpyCH4III ACNGT 1 cut(s) 711
HpyCH4IV ACGT 2 cut(s) 135, 395
HpyCH4V TGCA 3 cut(s) 167, 497, 594
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 253, 494, 628, 794, 823
HpyF3I CTNAG 3 cut(s) 358, 627, 813
HpySE526I ACGT 2 cut(s) 135, 395
Hsp92I GRCGYC 2 cut(s) 273, 429
Hsp92II CATG 2 cut(s) 694, 706
HspAI GCGC 3 cut(s) 261, 378, 826
KroI GCCGGC 3 cut(s) 16, 269, 353
KroNI GCCGGC 3 cut(s) 18, 271, 355
Kzo9I GATC 4 cut(s) 148, 390, 403, 482
LguI GCTCTTC 1 cut(s) 828
LmnI GCTCC 3 cut(s) 278, 295, 544
Lsp1109I GCAGC 4 cut(s) 509, 631, 740, 743
LweI GCATC 4 cut(s) 424, 673, 818, 917
MaeI CTAG 2 cut(s) 489, 533
MaeII ACGT 2 cut(s) 135, 395
MaeIII GTNAC 2 cut(s) 136, 396
MalI GATC 4 cut(s) 150, 392, 405, 484
MboI GATC 4 cut(s) 148, 390, 403, 482
MfeI CAATTG 1 cut(s) 887
MhlI GDGCHC 5 cut(s) 300, 445, 465, 819, 850
MluCI AATT 5 cut(s) 85, 108, 162, 240, 887
MlyI GAGTC 2 cut(s) 49, 323
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 8 cut(s) 79, 172, 175, 292, 295, 501, 550, 762
MreI CGCCGGCG 1 cut(s) 269
MroNI GCCGGC 3 cut(s) 16, 269, 353
MseI TTAA 2 cut(s) 474, 863
MspI CCGG 5 cut(s) 17, 270, 354, 426, 439
MspR9I CCNGG 3 cut(s) 439, 440, 608
MunI CAATTG 1 cut(s) 887
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 2 cut(s) 261, 378
MwoI GCNNNNNNNGC 6 cut(s) 173, 253, 494, 628, 794, 823
NaeI GCCGGC 3 cut(s) 18, 271, 355
NciI CCSGG 2 cut(s) 439, 440
NdeII GATC 4 cut(s) 148, 390, 403, 482
NgoMIV GCCGGC 3 cut(s) 16, 269, 353
NheI GCTAGC 1 cut(s) 488
NlaIII CATG 2 cut(s) 694, 706
NlaIV GGNNCC 2 cut(s) 280, 443
NmuCI GTSAC 2 cut(s) 136, 396
PciSI GCTCTTC 1 cut(s) 828
PdiI GCCGGC 3 cut(s) 18, 271, 355
PfeI GAWTC 4 cut(s) 51, 212, 233, 664
PkrI GCNGC 6 cut(s) 499, 517, 621, 730, 733, 907
PleI GAGTC 2 cut(s) 48, 323
PpsI GAGTC 2 cut(s) 48, 323
Psp124BI GAGCTC 3 cut(s) 300, 465, 819
Psp6I CCWGG 1 cut(s) 606
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 2 cut(s) 280, 443
PspOMI GGGCCC 1 cut(s) 441
PspPI GGNCC 5 cut(s) 14, 19, 304, 441, 442
RigI GGCCGGCC 1 cut(s) 20
RsaI GTAC 1 cut(s) 777
RsaNI GTAC 1 cut(s) 776
SacI GAGCTC 3 cut(s) 300, 465, 819
SapI GCTCTTC 1 cut(s) 828
SaqAI TTAA 2 cut(s) 474, 863
SatI GCNGC 6 cut(s) 498, 516, 620, 729, 732, 906
Sau3AI GATC 4 cut(s) 148, 390, 403, 482
Sau96I GGNCC 5 cut(s) 14, 19, 304, 441, 442
SchI GAGTC 2 cut(s) 49, 323
ScrFI CCNGG 3 cut(s) 439, 440, 608
SduI GDGCHC 5 cut(s) 300, 445, 465, 819, 850
SfaNI GCATC 4 cut(s) 424, 673, 818, 917
SfcI CTRYAG 1 cut(s) 648
SgrAI CRCCGGYG 1 cut(s) 269
SmaI CCCGGG 1 cut(s) 440
SmlI CTYRAG 2 cut(s) 299, 458
SmoI CTYRAG 2 cut(s) 299, 458
SrfI GCCCGGGC 1 cut(s) 440
Sse9I AATT 5 cut(s) 85, 108, 162, 240, 887
SsiI CCGC 9 cut(s) 34, 65, 176, 259, 376, 414, 516, 617, 905
SspMI CTAG 2 cut(s) 489, 533
SstI GAGCTC 3 cut(s) 300, 465, 819
StyD4I CCNGG 3 cut(s) 437, 438, 606
StyI CCWWGG 2 cut(s) 216, 342
TaaI ACNGT 1 cut(s) 711
TaiI ACGT 2 cut(s) 138, 398
TaqI TCGA 3 cut(s) 287, 366, 432
TasI AATT 5 cut(s) 85, 108, 162, 240, 887
TatI WGTACW 1 cut(s) 775
TauI GCSGC 2 cut(s) 518, 908
TfiI GAWTC 4 cut(s) 51, 212, 233, 664
Tru1I TTAA 2 cut(s) 474, 863
Tru9I TTAA 2 cut(s) 474, 863
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 2 cut(s) 136, 396
TseI GCWGC 4 cut(s) 497, 619, 728, 731
Tsp45I GTSAC 2 cut(s) 136, 396
TspDTI ATGAA 3 cut(s) 17, 627, 719
TspGWI ACGGA 2 cut(s) 245, 495
TspMI CCCGGG 1 cut(s) 438
TspRI CASTG 1 cut(s) 145
XapI RAATTY 2 cut(s) 85, 108
XmaI CCCGGG 1 cut(s) 438
XspI CTAG 2 cut(s) 489, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.