pycom05g26480

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0016780
Physical Location & Seq
Forward (+)
27741462 .. 27742304
843 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g26480.1

Sequence Viewer

Length: 543 bp
ATGGCGGCGGAGGACGAGGAGCCAAGGAAGAGAAAGGTGGTTGTGGAATCCCTCGGATGGCTGACGGAGTCCTCAATTATGCCGAAGAAGCACCGCGCCATCGCCGGCGTCGGAGCCTCCTCAATCATGGAGCTCAAGGCCCAACTCTATCAATCCCAAGAAGAATCCAAGAAGTCCAAAGAACTCGGCGGCTCCGACGTCGAGTTCCATCGCGCCAAGAAGAGAATCACCGCACACGACGCTTTCTCCGCCAAGAACTCCGGCGTCGACGCCCGGGCCCACAAGGACAAGCTTGAGCTGAAAGCAGTTCATGATGGATCGGCGAGCTATGCAGCCTTGGAAAGGAAGGCTGCATTGTACGATAAGCTAGCAAGGGGTGAGCTATCAGATGAAGAAGATAAAGAAAAGTATTGTGTGGATTTTTTCGGCAAGAGAGTTGAGCAGGACGAACCGCAGCAGACTCAGCACCGTGATTCACCTGCGGTAGTATCTCCGGAGAATCAAGATGGCGAATTGATCGATCAACGCTTCTACGCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

181

Amino Acids

20.16

Weight (kDa)

5.92

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016780)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05790
malus_domestica MD10G1263800.v1.1
prunus_persica Prupe.4G078700_v2.0.a1
pyrus_communis pycom05g26480 pycom10g22000
rosa_chinensis RchiOBHm_Chr5g0013711
rosa_laevigata RLG00000032042
rosa_multiflora Rmu_sc0002573.1_g000001
rosa_roxburghii Rroxscaffold_1G00062900
rosa_rugosa Rorug05G0012500
rosa_samantha Rh5AG106800 Rh5BG102900 Rh5CG114800 Rh5DG101600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 487
AatII GACGTC 1 cut(s) 201
Acc36I ACCTGC 1 cut(s) 487
AccI GTMKAC 1 cut(s) 267
AccII CGCG 2 cut(s) 96, 213
AccIII TCCGGA 1 cut(s) 493
AciI CCGC 8 cut(s) 5, 8, 94, 189, 231, 249, 452, 482
AclWI GGATC 1 cut(s) 325
AcyI GRCGYC 4 cut(s) 108, 198, 264, 270
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 57, 342
AluBI AGCT 6 cut(s) 133, 292, 298, 327, 367, 382
AluI AGCT 6 cut(s) 133, 292, 298, 327, 367, 382
Alw21I GWGCWC 1 cut(s) 135
AlwI GGATC 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 273
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 2 cut(s) 138, 276
ApaI GGGCCC 1 cut(s) 280
ApeKI GCWGC 3 cut(s) 332, 350, 454
AspLEI GCGC 2 cut(s) 98, 215
AspS9I GGNCC 3 cut(s) 139, 276, 277
AsuC2I CCSGG 2 cut(s) 274, 275
AsuHPI GGTGA 3 cut(s) 220, 389, 468
AsuNHI GCTAGC 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 273
BaeGI GKGCMC 1 cut(s) 280
BanII GRGCYC 2 cut(s) 135, 280
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 337, 344, 466
BccI CCATC 5 cut(s) 51, 107, 216, 308, 500
BcnI CCSGG 2 cut(s) 274, 275
BfaI CTAG 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 487
BisI GCNGC 5 cut(s) 6, 190, 333, 351, 455
BlsI GCNGC 5 cut(s) 7, 191, 334, 352, 456
Bme1390I CCNGG 2 cut(s) 274, 275
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 3 cut(s) 139, 276, 277
BmiI GGNNCC 4 cut(s) 21, 115, 193, 278
BmrFI CCNGG 2 cut(s) 274, 275
BmtI GCTAGC 1 cut(s) 371
BpuEI CTTGAG 2 cut(s) 119, 314
BpuMI CCSGG 2 cut(s) 274, 275
Bsa29I ATCGAT 1 cut(s) 519
BsaHI GRCGYC 4 cut(s) 108, 198, 264, 270
BsaJI CCNNGG 4 cut(s) 23, 52, 273, 336
BsaWI WCCGGW 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 342
Bse118I RCCGGY 1 cut(s) 104
BseAI TCCGGA 1 cut(s) 493
BseCI ATCGAT 1 cut(s) 519
BseDI CCNNGG 4 cut(s) 23, 52, 273, 336
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 2 cut(s) 57, 342
BseMII CTCAG 1 cut(s) 476
BseRI GAGGAG 2 cut(s) 32, 109
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 3 cut(s) 337, 344, 466
Bsh1236I CGCG 2 cut(s) 96, 213
BshFI GGCC 2 cut(s) 140, 278
BshVI ATCGAT 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 4 cut(s) 105, 261, 274, 494
BslI CCNNNNNNNGG 2 cut(s) 57, 342
BsnI GGCC 2 cut(s) 140, 278
BsoBI CYCGRG 1 cut(s) 273
Bsp120I GGGCCC 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 135, 280
Bsp13I TCCGGA 1 cut(s) 493
Bsp143I GATC 3 cut(s) 317, 516, 520
BspACI CCGC 8 cut(s) 5, 8, 94, 189, 231, 249, 452, 482
BspANI GGCC 2 cut(s) 140, 278
BspCNI CTCAG 1 cut(s) 475
BspDI ATCGAT 1 cut(s) 519
BspEI TCCGGA 1 cut(s) 493
BspFNI CGCG 2 cut(s) 96, 213
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 4 cut(s) 21, 115, 193, 278
BspMI ACCTGC 1 cut(s) 487
BspOI GCTAGC 1 cut(s) 371
BspPI GGATC 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 4 cut(s) 23, 52, 273, 336
BssMI GATC 3 cut(s) 317, 516, 520
BssNI GRCGYC 4 cut(s) 108, 198, 264, 270
BssT1I CCWWGG 2 cut(s) 23, 336
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 2 cut(s) 23, 215
BstACI GRCGYC 4 cut(s) 108, 198, 264, 270
BstC8I GCNNGC 3 cut(s) 106, 325, 369
BstDEI CTNAG 1 cut(s) 462
BstENI CCTNNNNNAGG 1 cut(s) 340
BstF5I GGATG 1 cut(s) 62
BstFNI CGCG 2 cut(s) 96, 213
BstHHI GCGC 2 cut(s) 98, 215
BstKTI GATC 3 cut(s) 320, 519, 523
BstMBI GATC 3 cut(s) 317, 516, 520
BstMWI GCNNNNNNNGC 5 cut(s) 88, 239, 248, 329, 463
BstSCI CCNGG 2 cut(s) 272, 273
BstSLI GKGCMC 1 cut(s) 280
BstUI CGCG 2 cut(s) 96, 213
BstV1I GCAGC 3 cut(s) 337, 344, 466
Bsu15I ATCGAT 1 cut(s) 519
BsuRI GGCC 2 cut(s) 140, 278
BsuTUI ATCGAT 1 cut(s) 519
BtgZI GCGATG 2 cut(s) 85, 194
BtsCI GGATG 1 cut(s) 62
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 3 cut(s) 106, 325, 369
CciI TCATGA 1 cut(s) 310
CfoI GCGC 2 cut(s) 98, 215
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 3 cut(s) 139, 276, 277
Cfr9I CCCGGG 1 cut(s) 273
ClaI ATCGAT 1 cut(s) 519
CseI GACGC 4 cut(s) 97, 248, 253, 278
Csp6I GTAC 1 cut(s) 358
CviAII CATG 2 cut(s) 127, 311
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 462
DpnI GATC 3 cut(s) 319, 518, 522
DpnII GATC 3 cut(s) 317, 516, 520
Eam1104I CTCTTC 2 cut(s) 23, 215
EarI CTCTTC 2 cut(s) 23, 215
EciI GGCGGA 2 cut(s) 23, 238
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 2 cut(s) 23, 336
Eco24I GRGCYC 2 cut(s) 135, 280
Eco53kI GAGCTC 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 340
EcoT14I CCWWGG 2 cut(s) 23, 336
EcoT38I GRGCYC 2 cut(s) 135, 280
ErhI CCWWGG 2 cut(s) 23, 336
FaeI CATG 2 cut(s) 130, 314
FaiI YATR 4 cut(s) 80, 128, 312, 330
FatI CATG 2 cut(s) 126, 310
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 5 cut(s) 6, 190, 333, 351, 455
FokI GGATG 1 cut(s) 69
FriOI GRGCYC 2 cut(s) 135, 280
Fsp4HI GCNGC 5 cut(s) 6, 190, 333, 351, 455
FspBI CTAG 1 cut(s) 368
GlaI GCGC 2 cut(s) 97, 214
GluI GCNGC 5 cut(s) 6, 190, 333, 351, 455
HaeIII GGCC 2 cut(s) 140, 278
HapII CCGG 4 cut(s) 105, 261, 274, 494
HgaI GACGC 4 cut(s) 97, 248, 253, 278
HhaI GCGC 2 cut(s) 98, 215
Hin1I GRCGYC 4 cut(s) 108, 198, 264, 270
Hin1II CATG 2 cut(s) 130, 314
Hin6I GCGC 2 cut(s) 96, 213
HinP1I GCGC 2 cut(s) 96, 213
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 7 cut(s) 47, 68, 164, 225, 460, 473, 499
HpaII CCGG 4 cut(s) 105, 261, 274, 494
HphI GGTGA 3 cut(s) 220, 389, 468
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 56, 113, 196, 388
Hpy188III TCNNGA 3 cut(s) 311, 494, 503
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 6 cut(s) 113, 200, 203, 242, 269, 272
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 332, 353
HpyF10VI GCNNNNNNNGC 5 cut(s) 88, 239, 248, 329, 463
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 4 cut(s) 108, 198, 264, 270
Hsp92II CATG 2 cut(s) 130, 314
HspAI GCGC 2 cut(s) 96, 213
Kpn2I TCCGGA 1 cut(s) 493
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 317, 516, 520
LmnI GCTCC 4 cut(s) 19, 113, 130, 197
LpnPI CCDG 6 cut(s) 118, 274, 287, 428, 492, 507
Lsp1109I GCAGC 3 cut(s) 337, 344, 466
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 198
MalI GATC 3 cut(s) 319, 518, 522
MboI GATC 3 cut(s) 317, 516, 520
MboII GAAGA 6 cut(s) 40, 97, 173, 232, 404, 407
MhlI GDGCHC 2 cut(s) 135, 280
MluCI AATT 2 cut(s) 75, 512
MlyI GAGTC 2 cut(s) 77, 454
MmeI TCCRAC 2 cut(s) 91, 219
MnlI CCTC 6 cut(s) 4, 10, 62, 82, 127, 130
MreI CGCCGGCG 1 cut(s) 104
MroI TCCGGA 1 cut(s) 493
MroNI GCCGGC 1 cut(s) 104
MspI CCGG 4 cut(s) 105, 261, 274, 494
MspR9I CCNGG 2 cut(s) 274, 275
MvnI CGCG 2 cut(s) 96, 213
MwoI GCNNNNNNNGC 5 cut(s) 88, 239, 248, 329, 463
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 2 cut(s) 274, 275
NdeII GATC 3 cut(s) 317, 516, 520
NgoMIV GCCGGC 1 cut(s) 104
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 2 cut(s) 130, 314
NlaIV GGNNCC 4 cut(s) 21, 115, 193, 278
NmeAIII GCCGAG 1 cut(s) 165
PagI TCATGA 1 cut(s) 310
PaqCI CACCTGC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 5 cut(s) 47, 164, 225, 473, 499
PflFI GACNNNGTC 1 cut(s) 67
PkrI GCNGC 5 cut(s) 7, 191, 334, 352, 456
PleI GAGTC 2 cut(s) 76, 454
PpsI GAGTC 2 cut(s) 76, 454
Psp124BI GAGCTC 1 cut(s) 135
PspN4I GGNNCC 4 cut(s) 21, 115, 193, 278
PspOMI GGGCCC 1 cut(s) 276
PspPI GGNCC 3 cut(s) 139, 276, 277
PsyI GACNNNGTC 1 cut(s) 67
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SacI GAGCTC 1 cut(s) 135
SalI GTCGAC 1 cut(s) 266
SatI GCNGC 5 cut(s) 6, 190, 333, 351, 455
Sau3AI GATC 3 cut(s) 317, 516, 520
Sau96I GGNCC 3 cut(s) 139, 276, 277
SchI GAGTC 2 cut(s) 77, 454
ScrFI CCNGG 2 cut(s) 274, 275
SduI GDGCHC 2 cut(s) 135, 280
SetI ASST 9 cut(s) 39, 135, 201, 294, 300, 329, 369, 384, 481
SgrAI CRCCGGYG 1 cut(s) 104
SgrDI CGTCGACG 1 cut(s) 266
SmaI CCCGGG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 134, 293
SmoI CTYRAG 2 cut(s) 134, 293
SrfI GCCCGGGC 1 cut(s) 275
Sse9I AATT 2 cut(s) 75, 512
SsiI CCGC 8 cut(s) 5, 8, 94, 189, 231, 249, 452, 482
SspMI CTAG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 272, 273
StyI CCWWGG 2 cut(s) 23, 336
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 201
TaqI TCGA 3 cut(s) 201, 267, 519
TasI AATT 2 cut(s) 75, 512
TauI GCSGC 2 cut(s) 8, 192
TfiI GAWTC 5 cut(s) 47, 164, 225, 473, 499
TseI GCWGC 3 cut(s) 332, 350, 454
TspDTI ATGAA 2 cut(s) 299, 405
TspGWI ACGGA 1 cut(s) 80
TspMI CCCGGG 1 cut(s) 273
Tth111I GACNNNGTC 1 cut(s) 67
XagI CCTNNNNNAGG 1 cut(s) 340
XmaI CCCGGG 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 1 cut(s) 368
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.