Rh5DG101600

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016780
Physical Location & Seq
Reverse (-)
9265938 .. 9268164
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG101600.1

Sequence Viewer

Length: 609 bp
ATGGGAGAAGAAGAAGAAGAGCCCAAGAAGAAGAGGGTGGTGGTGGAATCCCTGGGATGGCTTACGGAGTCGACCATAATGCCCAAGAAGCACCGCGCCATCGCCGGCGTTGGAGCCTCTTCTATCATGGAGCTCAAGGCCCAGCTCTACCAGTCTCAAGAAGACTCCAAGAAGTCCAAGGACCTCGCCGGCCCAGACACCGAGTTCCACCGCGCCAAGAAGAAGATCGCCGCACACGATGCCTTCTCCGTCAAGAACTCCGGCGTCGACGCCCGGGCCCACAAGGACAAGCTTGAGCTGAAGGCAGTTAAGGATGGATCAGCCAGCTATGCAGCGTTGGAGAAAAAGGCTGCATTGTATGATAAGCTAGCGAGGGGAGAGCTATCTGATGAGGAGGACAAGGAAAAGTATTGCGTGGATTTCTTTGTCAAGAGACATGAGCAGGATGAATCGGAGCAAACTCAGCATCACGATTCATCTGTTGTCGCACCACCGGAGAATCAAGATGGCGAGACTGATCTTTCTATGTTGTTTAGCACAAAACCTGTGGGGCTTGGGCAGGCAGGTGCAATATGGGACAATGATGAACACAAGCGATTTGTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

202

Amino Acids

22.55

Weight (kDa)

5.8

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016780)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g05790
malus_domestica MD10G1263800.v1.1
prunus_persica Prupe.4G078700_v2.0.a1
pyrus_communis pycom05g26480 pycom10g22000
rosa_chinensis RchiOBHm_Chr5g0013711
rosa_laevigata RLG00000032042
rosa_multiflora Rmu_sc0002573.1_g000001
rosa_roxburghii Rroxscaffold_1G00062900
rosa_rugosa Rorug05G0012500
rosa_samantha Rh5AG106800 Rh5BG102900 Rh5CG114800 Rh5DG101600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 554
AccI GTMKAC 2 cut(s) 71, 267
AccII CGCG 2 cut(s) 96, 213
AciI CCGC 3 cut(s) 94, 211, 231
AclWI GGATC 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 320
AcyI GRCGYC 2 cut(s) 264, 270
AfiI CCNNNNNNNGG 1 cut(s) 57
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 7 cut(s) 133, 145, 292, 298, 327, 367, 382
AluI AGCT 7 cut(s) 133, 145, 292, 298, 327, 367, 382
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 3 cut(s) 159, 427, 506
AlwI GGATC 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 3 cut(s) 138, 190, 276
ApaI GGGCCC 1 cut(s) 280
ApeKI GCWGC 2 cut(s) 332, 350
AspLEI GCGC 2 cut(s) 98, 215
AspS9I GGNCC 5 cut(s) 139, 181, 191, 276, 277
AsuC2I CCSGG 2 cut(s) 274, 275
AsuNHI GCTAGC 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 280
BanII GRGCYC 3 cut(s) 24, 135, 280
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 337, 344
BccI CCATC 4 cut(s) 51, 107, 308, 500
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BciT130I CCWGG 1 cut(s) 53
BcnI CCSGG 2 cut(s) 274, 275
BcoDI GTCTC 3 cut(s) 159, 427, 506
BfaI CTAG 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 554
BisI GCNGC 3 cut(s) 231, 333, 351
BlsI GCNGC 3 cut(s) 232, 334, 352
Bme1390I CCNGG 3 cut(s) 53, 274, 275
Bme18I GGWCC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 5 cut(s) 139, 181, 191, 276, 277
BmiI GGNNCC 2 cut(s) 115, 278
BmrFI CCNGG 3 cut(s) 53, 274, 275
BmsI GCATC 2 cut(s) 229, 475
BmtI GCTAGC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 168
BpuEI CTTGAG 3 cut(s) 119, 141, 314
BpuMI CCSGG 2 cut(s) 274, 275
BsaHI GRCGYC 2 cut(s) 264, 270
BsaJI CCNNGG 4 cut(s) 51, 52, 177, 273
BsaWI WCCGGW 1 cut(s) 493
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse118I RCCGGY 2 cut(s) 104, 188
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 4 cut(s) 51, 52, 177, 273
BseGI GGATG 3 cut(s) 62, 319, 451
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 407
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 2 cut(s) 337, 344
BseYI CCCAGC 1 cut(s) 141
Bsh1236I CGCG 2 cut(s) 96, 213
BshFI GGCC 3 cut(s) 140, 192, 278
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 5 cut(s) 105, 189, 261, 274, 494
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 3 cut(s) 159, 427, 506
BsmFI GGGAC 1 cut(s) 590
BsnI GGCC 3 cut(s) 140, 192, 278
BsoBI CYCGRG 1 cut(s) 273
Bsp120I GGGCCC 1 cut(s) 276
Bsp1286I GDGCHC 3 cut(s) 24, 135, 280
Bsp143I GATC 3 cut(s) 225, 317, 517
BspACI CCGC 3 cut(s) 94, 211, 231
BspANI GGCC 3 cut(s) 140, 192, 278
BspCNI CTCAG 1 cut(s) 475
BspFNI CGCG 2 cut(s) 96, 213
BspLI GGNNCC 2 cut(s) 115, 278
BspMI ACCTGC 1 cut(s) 554
BspOI GCTAGC 1 cut(s) 371
BspPI GGATC 1 cut(s) 325
BspQI GCTCTTC 1 cut(s) 12
BsrFI RCCGGY 2 cut(s) 104, 188
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 2 cut(s) 104, 188
BssECI CCNNGG 4 cut(s) 51, 52, 177, 273
BssMI GATC 3 cut(s) 225, 317, 517
BssNI GRCGYC 2 cut(s) 264, 270
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 3 cut(s) 12, 26, 124
BstACI GRCGYC 2 cut(s) 264, 270
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 5 cut(s) 106, 190, 325, 369, 561
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 3 cut(s) 62, 319, 451
BstFNI CGCG 2 cut(s) 96, 213
BstHHI GCGC 2 cut(s) 98, 215
BstKTI GATC 3 cut(s) 228, 320, 520
BstMAI GTCTC 3 cut(s) 159, 427, 506
BstMBI GATC 3 cut(s) 225, 317, 517
BstMWI GCNNNNNNNGC 4 cut(s) 88, 239, 329, 463
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 3 cut(s) 51, 272, 273
BstSLI GKGCMC 1 cut(s) 280
BstUI CGCG 2 cut(s) 96, 213
BstV1I GCAGC 2 cut(s) 337, 344
BstV2I GAAGAC 1 cut(s) 168
BsuRI GGCC 3 cut(s) 140, 192, 278
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 3 cut(s) 62, 319, 451
BveI ACCTGC 1 cut(s) 554
Cac8I GCNNGC 5 cut(s) 106, 190, 325, 369, 561
CfoI GCGC 2 cut(s) 98, 215
Cfr10I RCCGGY 2 cut(s) 104, 188
Cfr13I GGNCC 5 cut(s) 139, 181, 191, 276, 277
Cfr9I CCCGGG 1 cut(s) 273
CseI GACGC 2 cut(s) 253, 278
CspCI CAANNNNNGTGG 2 cut(s) 528, 563
CviAII CATG 2 cut(s) 127, 437
DdeI CTNAG 1 cut(s) 462
DpnI GATC 3 cut(s) 227, 319, 519
DpnII GATC 3 cut(s) 225, 317, 517
Eam1104I CTCTTC 3 cut(s) 12, 26, 124
EarI CTCTTC 3 cut(s) 12, 26, 124
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 3 cut(s) 24, 135, 280
Eco47I GGWCC 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 133
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 3 cut(s) 24, 135, 280
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 130, 440
FaiI YATR 7 cut(s) 77, 128, 330, 360, 438, 527, 574
FaqI GGGAC 1 cut(s) 590
FatI CATG 2 cut(s) 126, 436
FblI GTMKAC 2 cut(s) 71, 267
Fnu4HI GCNGC 3 cut(s) 231, 333, 351
FokI GGATG 3 cut(s) 69, 326, 458
FriOI GRGCYC 3 cut(s) 24, 135, 280
Fsp4HI GCNGC 3 cut(s) 231, 333, 351
FspBI CTAG 1 cut(s) 368
GlaI GCGC 2 cut(s) 97, 214
GluI GCNGC 3 cut(s) 231, 333, 351
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 3 cut(s) 140, 192, 278
HapII CCGG 5 cut(s) 105, 189, 261, 274, 494
HgaI GACGC 2 cut(s) 253, 278
HhaI GCGC 2 cut(s) 98, 215
Hin1I GRCGYC 2 cut(s) 264, 270
Hin1II CATG 2 cut(s) 130, 440
Hin6I GCGC 2 cut(s) 96, 213
HinP1I GCGC 2 cut(s) 96, 213
HincII GTYRAC 2 cut(s) 72, 268
HindII GTYRAC 2 cut(s) 72, 268
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 6 cut(s) 47, 68, 164, 449, 473, 499
HpaII CCGG 5 cut(s) 105, 189, 261, 274, 494
Hpy166II GTNNAC 2 cut(s) 72, 268
Hpy188I TCNGA 2 cut(s) 388, 454
Hpy188III TCNNGA 5 cut(s) 158, 253, 430, 470, 503
Hpy8I GTNNAC 2 cut(s) 72, 268
Hpy99I CGWCG 2 cut(s) 269, 272
HpyAV CCTTC 2 cut(s) 253, 295
HpyCH4V TGCA 3 cut(s) 332, 353, 569
HpyF10VI GCNNNNNNNGC 4 cut(s) 88, 239, 329, 463
HpyF3I CTNAG 1 cut(s) 462
Hsp92I GRCGYC 2 cut(s) 264, 270
Hsp92II CATG 2 cut(s) 130, 440
HspAI GCGC 2 cut(s) 96, 213
KroI GCCGGC 2 cut(s) 104, 188
KroNI GCCGGC 2 cut(s) 106, 190
Kzo9I GATC 3 cut(s) 225, 317, 517
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 3 cut(s) 113, 130, 454
Lsp1109I GCAGC 2 cut(s) 337, 344
LweI GCATC 2 cut(s) 229, 475
MaeI CTAG 1 cut(s) 368
MalI GATC 3 cut(s) 227, 319, 519
MboI GATC 3 cut(s) 225, 317, 517
MhlI GDGCHC 3 cut(s) 24, 135, 280
MlyI GAGTC 2 cut(s) 77, 158
MmeI TCCRAC 2 cut(s) 91, 318
MnlI CCTC 7 cut(s) 27, 127, 194, 366, 385, 388, 597
MreI CGCCGGCG 1 cut(s) 104
MroNI GCCGGC 2 cut(s) 104, 188
MseI TTAA 1 cut(s) 309
MspI CCGG 5 cut(s) 105, 189, 261, 274, 494
MspR9I CCNGG 3 cut(s) 53, 274, 275
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 2 cut(s) 96, 213
MwoI GCNNNNNNNGC 4 cut(s) 88, 239, 329, 463
NaeI GCCGGC 2 cut(s) 106, 190
NciI CCSGG 2 cut(s) 274, 275
NdeII GATC 3 cut(s) 225, 317, 517
NgoMIV GCCGGC 2 cut(s) 104, 188
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 2 cut(s) 130, 440
NlaIV GGNNCC 2 cut(s) 115, 278
PaqCI CACCTGC 1 cut(s) 554
PasI CCCWGGG 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdiI GCCGGC 2 cut(s) 106, 190
PfeI GAWTC 4 cut(s) 47, 449, 473, 499
PkrI GCNGC 3 cut(s) 232, 334, 352
PleI GAGTC 2 cut(s) 76, 158
PpsI GAGTC 2 cut(s) 76, 158
PpuMI RGGWCCY 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 135
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 115, 278
PspOMI GGGCCC 1 cut(s) 276
PspPI GGNCC 5 cut(s) 139, 181, 191, 276, 277
PspPPI RGGWCCY 1 cut(s) 181
SacI GAGCTC 1 cut(s) 135
SalI GTCGAC 2 cut(s) 70, 266
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 3 cut(s) 231, 333, 351
Sau3AI GATC 3 cut(s) 225, 317, 517
Sau96I GGNCC 5 cut(s) 139, 181, 191, 276, 277
SchI GAGTC 2 cut(s) 77, 158
ScrFI CCNGG 3 cut(s) 53, 274, 275
SduI GDGCHC 3 cut(s) 24, 135, 280
SfaNI GCATC 2 cut(s) 229, 475
SgrAI CRCCGGYG 1 cut(s) 104
SgrDI CGTCGACG 1 cut(s) 266
SinI GGWCC 1 cut(s) 181
SmaI CCCGGG 1 cut(s) 275
SmlI CTYRAG 3 cut(s) 134, 156, 293
SmoI CTYRAG 3 cut(s) 134, 156, 293
SrfI GCCCGGGC 1 cut(s) 275
SsiI CCGC 3 cut(s) 94, 211, 231
SspMI CTAG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 51, 272, 273
StyI CCWWGG 1 cut(s) 177
TaqI TCGA 2 cut(s) 71, 267
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 47, 449, 473, 499
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseI GCWGC 2 cut(s) 332, 350
TspDTI ATGAA 3 cut(s) 462, 465, 600
TspGWI ACGGA 2 cut(s) 80, 238
TspMI CCCGGG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 181
XmaI CCCGGG 1 cut(s) 273
XmiI GTMKAC 2 cut(s) 71, 267
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.