FvH4_3g06760

Protein of unknown function (DUF1264)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016212
Physical Location & Seq
Reverse (-)
3911580 .. 3912930
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06760.t1

Sequence Viewer

Length: 756 bp
ATGGCCTCGAGTGACCAGAGACCGACTGCGAATCCAGTCCAAGGCGGCAGCGACGACTCCTTGGGGTCCTTGACGCCCGGGAAGCCGATGACGTTGGGGCAGCATGTGCTGGACAAAGGAGCGGAGATGATGCAGTCCCTAAAGCCGGTGAGCCAGATAAGCCAGCACGCGTGCACCTTCGCTCTCTACAGCCACGATCCCACGCGTCAGATCGAGACCCACCACTACGTCCACCGCCTCAACCAGGACTTCCTCCAGTGCGCCGTCTACGACTCTGACGGGTCACACGGCCGCCTCATCGGTGTGGAATACATAGTATCTGATCGGATATTCGAGGCTTTGCCTCCGGAGGAGCAAAAGCTTTGGCACTCTCATGCTTATGAGATCAAATCGGGTCTTTGGGTCAATCCCCGCATCCCCGAGATGATCGGTAAGCCGGAGCTTGAAAATTTGGCCAAAACTTATGGCAAATTCTGGTGCACATGGCAGGTTGATAGAGGTGATAGGCTTCCAATGGGAGCACCTGCGTTGATGGTGTCACCTCAGCCAGTGAACTTGGGCCATGTGAAGCCGGAGCTGGTGGCGAGGAGGGATGCCATTTACAACATATCCACCGAGGCCATAAGCCACTCGAGATTGGAGATCGGGGAGCCGGAGTGGATCAATCCGCAGGCGGACTACTGGAAAAGTCACGGCAAGGGTTTTGCCGTCGACATTAAGAGCACCAAGATGTTGACGAGGGCACCCTTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1264

Protein Analysis

252

Amino Acids

28.15

Weight (kDa)

6.3

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1264 PF06884 48 - 215 1.5e-67 Protein of unknown function (DUF1264)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45690
fragaria_vesca FvH4_3g06760
malus_domestica MD10G1271700.v1.1 MD17G1093800.v1.1
prunus_persica Prupe.4G070200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0012391
rosa_laevigata RLG00000031910
rosa_multiflora Rmu_sc0003469.1_g000010
rosa_roxburghii Rroxscaffold_1G00064270
rosa_rugosa Rorug05G0000800
rosa_samantha Rh5AG095200 Rh5BG091500 Rh5CG104400 Rh5DG090900
rosa_wichuraiana Rw5G008330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
Acc36I ACCTGC 2 cut(s) 478, 532
AccB1I GGYRCC 1 cut(s) 742
AccBSI CCGCTC 1 cut(s) 122
AccI GTMKAC 2 cut(s) 267, 711
AccII CGCG 2 cut(s) 170, 205
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 7 cut(s) 45, 122, 235, 292, 412, 668, 674
AclWI GGATC 2 cut(s) 191, 668
AcoI YGGCCR 2 cut(s) 289, 453
AcsI RAATTY 2 cut(s) 448, 470
AcyI GRCGYC 1 cut(s) 74
AfiI CCNNNNNNNGG 3 cut(s) 41, 145, 244
AflIII ACRYGT 2 cut(s) 168, 203
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 3 cut(s) 361, 442, 577
AluI AGCT 3 cut(s) 361, 442, 577
Alw21I GWGCWC 4 cut(s) 176, 482, 523, 725
Alw26I GTCTC 2 cut(s) 13, 209
Alw44I GTGCAC 2 cut(s) 172, 478
AlwI GGATC 2 cut(s) 191, 668
Ama87I CYCGRG 4 cut(s) 7, 77, 419, 631
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 5 cut(s) 3, 289, 453, 559, 618
ApaLI GTGCAC 2 cut(s) 172, 478
ApeKI GCWGC 2 cut(s) 48, 100
ApoI RAATTY 2 cut(s) 448, 470
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 66, 559
AsuC2I CCSGG 2 cut(s) 78, 79
AsuHPI GGTGA 3 cut(s) 160, 512, 531
AvaI CYCGRG 4 cut(s) 7, 77, 419, 631
AvaII GGWCC 1 cut(s) 66
BaeGI GKGCMC 3 cut(s) 176, 482, 745
BalI TGGCCA 1 cut(s) 455
BanI GGYRCC 1 cut(s) 742
Bbv12I GWGCWC 4 cut(s) 176, 482, 523, 725
BbvCI CCTCAGC 1 cut(s) 543
BbvI GCAGC 2 cut(s) 60, 112
BccI CCATC 1 cut(s) 526
BceAI ACGGC 4 cut(s) 248, 304, 692, 709
BciT130I CCWGG 1 cut(s) 245
BcnI CCSGG 2 cut(s) 78, 79
BcoDI GTCTC 2 cut(s) 13, 209
BfmI CTRYAG 1 cut(s) 187
BfuAI ACCTGC 2 cut(s) 478, 532
BisI GCNGC 4 cut(s) 46, 49, 101, 292
BlsI GCNGC 4 cut(s) 47, 50, 102, 293
Bme1390I CCNGG 3 cut(s) 78, 79, 245
Bme18I GGWCC 1 cut(s) 66
BmeT110I CYCGRG 4 cut(s) 7, 77, 419, 631
BmgT120I GGNCC 2 cut(s) 66, 559
BmiI GGNNCC 3 cut(s) 67, 651, 744
BmrFI CCNGG 3 cut(s) 78, 79, 245
BmsI GCATC 3 cut(s) 120, 423, 583
BpmI CTGGAG 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 543
BpuMI CCSGG 2 cut(s) 78, 79
BsaHI GRCGYC 1 cut(s) 74
BsaI GGTCTC 2 cut(s) 13, 209
BsaJI CCNNGG 4 cut(s) 40, 60, 77, 615
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 641, 671
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 145, 244
Bse118I RCCGGY 1 cut(s) 145
Bse1I ACTGG 4 cut(s) 35, 256, 548, 686
BseAI TCCGGA 1 cut(s) 346
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 4 cut(s) 40, 60, 77, 615
BseGI GGATG 2 cut(s) 414, 598
BseLI CCNNNNNNNGG 3 cut(s) 41, 145, 244
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 4 cut(s) 35, 256, 548, 686
BseRI GAGGAG 2 cut(s) 365, 601
BseSI GKGCMC 3 cut(s) 176, 482, 745
BseX3I CGGCCG 1 cut(s) 289
BseXI GCAGC 2 cut(s) 60, 112
Bsh1236I CGCG 2 cut(s) 170, 205
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 5 cut(s) 5, 291, 455, 561, 620
BshNI GGYRCC 1 cut(s) 742
BsiEI CGRYCG 1 cut(s) 292
BsiHKAI GWGCWC 4 cut(s) 176, 482, 523, 725
BsiHKCI CYCGRG 4 cut(s) 7, 77, 419, 631
BsiSI CCGG 6 cut(s) 78, 146, 347, 437, 572, 653
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 3 cut(s) 41, 145, 244
BsmAI GTCTC 2 cut(s) 13, 209
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 5 cut(s) 5, 291, 455, 561, 620
Bso31I GGTCTC 2 cut(s) 13, 209
BsoBI CYCGRG 4 cut(s) 7, 77, 419, 631
Bsp1286I GDGCHC 5 cut(s) 176, 482, 523, 725, 745
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 7 cut(s) 196, 210, 322, 384, 426, 642, 660
BspACI CCGC 7 cut(s) 45, 122, 235, 292, 412, 668, 674
BspANI GGCC 5 cut(s) 5, 291, 455, 561, 620
BspCNI CTCAG 1 cut(s) 556
BspEI TCCGGA 1 cut(s) 346
BspFNI CGCG 2 cut(s) 170, 205
BspLI GGNNCC 3 cut(s) 67, 651, 744
BspMI ACCTGC 2 cut(s) 478, 532
BspPI GGATC 2 cut(s) 191, 668
BspT107I GGYRCC 1 cut(s) 742
BspTNI GGTCTC 2 cut(s) 13, 209
BsrBI CCGCTC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 145
BsrI ACTGG 4 cut(s) 35, 256, 548, 686
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 4 cut(s) 40, 60, 77, 615
BssMI GATC 7 cut(s) 196, 210, 322, 384, 426, 642, 660
BssNI GRCGYC 1 cut(s) 74
BssT1I CCWWGG 2 cut(s) 40, 60
Bst2UI CCWGG 1 cut(s) 245
BstACI GRCGYC 1 cut(s) 74
BstAPI GCANNNNNTGC 1 cut(s) 106
BstC8I GCNNGC 4 cut(s) 164, 168, 172, 672
BstDEI CTNAG 1 cut(s) 543
BstENI CCTNNNNNAGG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 414, 598
BstFNI CGCG 2 cut(s) 170, 205
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 7 cut(s) 199, 213, 325, 387, 429, 645, 663
BstMAI GTCTC 2 cut(s) 13, 209
BstMBI GATC 7 cut(s) 196, 210, 322, 384, 426, 642, 660
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 82, 106, 159
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 76, 77, 243
BstSFI CTRYAG 1 cut(s) 187
BstSLI GKGCMC 3 cut(s) 176, 482, 745
BstUI CGCG 2 cut(s) 170, 205
BstV1I GCAGC 2 cut(s) 60, 112
BstZI CGGCCG 1 cut(s) 289
BsuRI GGCC 5 cut(s) 5, 291, 455, 561, 620
BtsCI GGATG 2 cut(s) 414, 598
BtsIMutI CAGTG 2 cut(s) 263, 555
BveI ACCTGC 2 cut(s) 478, 532
Cac8I GCNNGC 4 cut(s) 164, 168, 172, 672
CfoI GCGC 1 cut(s) 263
Cfr10I RCCGGY 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 66, 559
Cfr9I CCCGGG 1 cut(s) 77
CseI GACGC 2 cut(s) 82, 194
CviAII CATG 4 cut(s) 104, 374, 483, 563
DdeI CTNAG 1 cut(s) 543
DpnI GATC 7 cut(s) 198, 212, 324, 386, 428, 644, 662
DpnII GATC 7 cut(s) 196, 210, 322, 384, 426, 642, 660
EaeI YGGCCR 2 cut(s) 289, 453
EagI CGGCCG 1 cut(s) 289
EciI GGCGGA 1 cut(s) 689
EclXI CGGCCG 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 40, 60
Eco31I GGTCTC 2 cut(s) 13, 209
Eco47I GGWCC 1 cut(s) 66
Eco52I CGGCCG 1 cut(s) 289
Eco88I CYCGRG 4 cut(s) 7, 77, 419, 631
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 2 cut(s) 40, 60
ErhI CCWWGG 2 cut(s) 40, 60
FaeI CATG 4 cut(s) 107, 377, 486, 566
FaiI YATR 9 cut(s) 105, 314, 375, 381, 465, 484, 564, 608, 623
FaqI GGGAC 1 cut(s) 121
FatI CATG 4 cut(s) 103, 373, 482, 562
FauI CCCGC 1 cut(s) 419
FblI GTMKAC 2 cut(s) 267, 711
Fnu4HI GCNGC 4 cut(s) 46, 49, 101, 292
FokI GGATG 2 cut(s) 401, 605
Fsp4HI GCNGC 4 cut(s) 46, 49, 101, 292
GlaI GCGC 1 cut(s) 262
GluI GCNGC 4 cut(s) 46, 49, 101, 292
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 5 cut(s) 5, 291, 455, 561, 620
HapII CCGG 6 cut(s) 78, 146, 347, 437, 572, 653
HgaI GACGC 2 cut(s) 82, 194
HhaI GCGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 4 cut(s) 107, 377, 486, 566
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HincII GTYRAC 2 cut(s) 712, 735
HindII GTYRAC 2 cut(s) 712, 735
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 3 cut(s) 31, 56, 272
HpaII CCGG 6 cut(s) 78, 146, 347, 437, 572, 653
HphI GGTGA 3 cut(s) 160, 512, 531
Hpy166II GTNNAC 7 cut(s) 174, 232, 268, 480, 553, 712, 735
Hpy188I TCNGA 4 cut(s) 210, 277, 322, 327
Hpy188III TCNNGA 3 cut(s) 214, 347, 633
Hpy8I GTNNAC 7 cut(s) 174, 232, 268, 480, 553, 712, 735
Hpy99I CGWCG 2 cut(s) 56, 713
HpyAV CCTTC 1 cut(s) 187
HpyCH4IV ACGT 2 cut(s) 92, 228
HpyCH4V TGCA 3 cut(s) 133, 174, 480
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 106, 159
HpyF3I CTNAG 1 cut(s) 543
HpySE526I ACGT 2 cut(s) 92, 228
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 4 cut(s) 107, 377, 486, 566
HspAI GCGC 1 cut(s) 261
Kpn2I TCCGGA 1 cut(s) 346
Kzo9I GATC 7 cut(s) 196, 210, 322, 384, 426, 642, 660
LmnI GCTCC 6 cut(s) 119, 352, 439, 518, 574, 649
Lsp1109I GCAGC 2 cut(s) 60, 112
LweI GCATC 3 cut(s) 120, 423, 583
MaeII ACGT 2 cut(s) 92, 228
MaeIII GTNAC 4 cut(s) 11, 282, 537, 689
MalI GATC 7 cut(s) 198, 212, 324, 386, 428, 644, 662
MbiI CCGCTC 1 cut(s) 122
MboI GATC 7 cut(s) 196, 210, 322, 384, 426, 642, 660
MhlI GDGCHC 5 cut(s) 176, 482, 523, 725, 745
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 2 cut(s) 448, 470
MluI ACGCGT 2 cut(s) 168, 203
MluNI TGGCCA 1 cut(s) 455
MlyI GAGTC 2 cut(s) 50, 266
Mox20I TGGCCA 1 cut(s) 455
MroI TCCGGA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 455
MseI TTAA 2 cut(s) 717, 754
MslI CAYNNNNRTG 4 cut(s) 302, 372, 378, 728
Msp20I TGGCCA 1 cut(s) 455
MspI CCGG 6 cut(s) 78, 146, 347, 437, 572, 653
MspR9I CCNGG 3 cut(s) 78, 79, 245
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 2 cut(s) 170, 205
MwoI GCNNNNNNNGC 3 cut(s) 82, 106, 159
NciI CCSGG 2 cut(s) 78, 79
NdeII GATC 7 cut(s) 196, 210, 322, 384, 426, 642, 660
NlaIII CATG 4 cut(s) 107, 377, 486, 566
NlaIV GGNNCC 3 cut(s) 67, 651, 744
NmuCI GTSAC 4 cut(s) 11, 282, 537, 689
NspI RCATGY 1 cut(s) 107
PaeR7I CTCGAG 2 cut(s) 7, 631
PaqCI CACCTGC 1 cut(s) 532
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 4 cut(s) 47, 50, 102, 293
PleI GAGTC 2 cut(s) 50, 266
PpsI GAGTC 2 cut(s) 50, 266
PpuMI RGGWCCY 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 3 cut(s) 67, 651, 744
PspPI GGNCC 2 cut(s) 66, 559
PspPPI RGGWCCY 1 cut(s) 66
PspXI VCTCGAGB 1 cut(s) 7
RseI CAYNNNNRTG 4 cut(s) 302, 372, 378, 728
SalI GTCGAC 1 cut(s) 710
SaqAI TTAA 2 cut(s) 717, 754
SatI GCNGC 4 cut(s) 46, 49, 101, 292
Sau3AI GATC 7 cut(s) 196, 210, 322, 384, 426, 642, 660
Sau96I GGNCC 2 cut(s) 66, 559
SchI GAGTC 2 cut(s) 50, 266
ScrFI CCNGG 3 cut(s) 78, 79, 245
SduI GDGCHC 5 cut(s) 176, 482, 523, 725, 745
SfaNI GCATC 3 cut(s) 120, 423, 583
SfcI CTRYAG 1 cut(s) 187
Sfr274I CTCGAG 2 cut(s) 7, 631
SinI GGWCC 1 cut(s) 66
SlaI CTCGAG 2 cut(s) 7, 631
SmaI CCCGGG 1 cut(s) 79
SmiMI CAYNNNNRTG 4 cut(s) 302, 372, 378, 728
SmlI CTYRAG 2 cut(s) 7, 631
SmoI CTYRAG 2 cut(s) 7, 631
Sse9I AATT 2 cut(s) 448, 470
SsiI CCGC 7 cut(s) 45, 122, 235, 292, 412, 668, 674
StyD4I CCNGG 3 cut(s) 76, 77, 243
StyI CCWWGG 2 cut(s) 40, 60
TaiI ACGT 2 cut(s) 95, 231
TaqI TCGA 5 cut(s) 8, 213, 333, 632, 711
TaqII GACCGA 1 cut(s) 37
TasI AATT 2 cut(s) 448, 470
TauI GCSGC 2 cut(s) 48, 294
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 717, 754
Tru9I TTAA 2 cut(s) 717, 754
TscAI CASTG 2 cut(s) 263, 555
TseFI GTSAC 4 cut(s) 11, 282, 537, 689
TseI GCWGC 2 cut(s) 48, 100
Tsp45I GTSAC 4 cut(s) 11, 282, 537, 689
TspMI CCCGGG 1 cut(s) 77
TspRI CASTG 2 cut(s) 263, 555
VneI GTGCAC 2 cut(s) 172, 478
VpaK11BI GGWCC 1 cut(s) 66
XagI CCTNNNNNAGG 1 cut(s) 242
XapI RAATTY 2 cut(s) 448, 470
XceI RCATGY 1 cut(s) 107
XhoI CTCGAG 2 cut(s) 7, 631
XmaI CCCGGG 1 cut(s) 77
XmiI GTMKAC 2 cut(s) 267, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.