Prupe.4G070200_v2.0.a1

Protein of unknown function (DUF1264)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016212
Physical Location & Seq
Forward (+)
3437612 .. 3438942
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G070200.1

Sequence Viewer

Length: 912 bp
ATGTCCACGTGGAAGCCTCACAACACACCACGTATTCCCACTCCTTTATCAACTCTCTCCCCTTTTCTGATCACATATATGAAACTAGTTACAACCAGAGACAGTCTACACACTTGCACTGACCATAGTCACAGAGAAAGAGAGATAGTACGAACGACGTCGTTTGAGATGGCTTCAAGTGACAAGACACCGACTCCGAACCCGGCCTTCCAGGGCGACCATCCGACGCCGCCGGGAAAGCCGATGACGATGGCCCAACACGTGTTGGACAAAGGAGCGGAGATGATGCAGTCCCTGACGCCGGTGAACCAGATGAGCCAGCACGTGTGCACCTTCGCCCTCTACAGCCACGACATGACACGTCAGATCGAGACCCACCACTACGTCACCCGCCTCAACCAGGACTTCCTCCAGTGCGCCGTCTACGACTCTGACGACTCCCACGCCCGACTCATCGGTGTGGAGTATGTGGTGTCTGATAGGATATTTGAGACTCTGCCTCCGGATGAGCAAAAGCTGTGGCATTCCCATGCTTACGAGATCAAAGCAGGCCTCTGGGTCAGCCCTCGGATCCCCGATATGATTGGCCAGCCTGAGCTCAAGAATTTGACCAAAACTTATGGCAAATTCTGGTGCACATGGCAGGTTGATCGAGGTGATCGGCTTCCACTGGGGGCGCCGGCGCTAATGATGTCTCCCCAAGCGGTGAACTTGGGGATGGTGAAGCCGGAGCTGGTGCAGAAGAGGGATGACAAGTACAACATATCAACGGATGCTTTGAGGGTGTCGAGGGTGGAGATAGCCGAGCCGGAGTGGAGTAATCCGCAGGCGGATTACTGGAAGCAGCATGGCAAGGGTTTCGCCGTTGACGTCAAGCACACTGAGATGAAGAAAATCGCACCCTTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1264

Protein Analysis

304

Amino Acids

34.66

Weight (kDa)

6.73

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45690
fragaria_vesca FvH4_3g06760
malus_domestica MD10G1271700.v1.1 MD17G1093800.v1.1
prunus_persica Prupe.4G070200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0012391
rosa_laevigata RLG00000031910
rosa_multiflora Rmu_sc0003469.1_g000010
rosa_roxburghii Rroxscaffold_1G00064270
rosa_rugosa Rorug05G0000800
rosa_samantha Rh5AG095200 Rh5BG091500 Rh5CG104400 Rh5DG090900
rosa_wichuraiana Rw5G008330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 161, 873
Acc36I ACCTGC 1 cut(s) 634
AccB1I GGYRCC 1 cut(s) 676
AccBSI CCGCTC 1 cut(s) 278
AccI GTMKAC 2 cut(s) 106, 423
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 6 cut(s) 230, 278, 391, 704, 824, 830
AclWI GGATC 2 cut(s) 565, 578
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 2 cut(s) 604, 626
AcvI CACGTG 3 cut(s) 9, 262, 325
AcyI GRCGYC 5 cut(s) 158, 227, 299, 677, 870
AfaI GTAC 2 cut(s) 150, 758
AfiI CCNNNNNNNGG 2 cut(s) 301, 400
AflIII ACRYGT 4 cut(s) 259, 261, 324, 359
AgsI TTSAA 1 cut(s) 177
AhlI ACTAGT 1 cut(s) 85
AjiI CACGTC 1 cut(s) 362
AjnI CCWGG 2 cut(s) 210, 399
AluBI AGCT 3 cut(s) 517, 598, 733
AluI AGCT 3 cut(s) 517, 598, 733
Alw21I GWGCWC 3 cut(s) 332, 600, 638
Alw26I GTCTC 4 cut(s) 93, 365, 485, 699
Alw44I GTGCAC 2 cut(s) 328, 634
AlwI GGATC 2 cut(s) 565, 578
AlwNI CAGNNNCTG 1 cut(s) 295
Aor13HI TCCGGA 1 cut(s) 502
AoxI GGCC 4 cut(s) 204, 252, 550, 586
ApaLI GTGCAC 2 cut(s) 328, 634
ApeKI GCWGC 1 cut(s) 844
ApoI RAATTY 2 cut(s) 604, 626
AspLEI GCGC 3 cut(s) 419, 679, 685
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 2 cut(s) 203, 234
AsuHPI GGTGA 5 cut(s) 316, 379, 668, 718, 733
BaeGI GKGCMC 2 cut(s) 332, 638
BalI TGGCCA 1 cut(s) 588
BamHI GGATCC 1 cut(s) 570
BanI GGYRCC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 600
BbrPI CACGTG 3 cut(s) 9, 262, 325
Bbv12I GWGCWC 3 cut(s) 332, 600, 638
BbvI GCAGC 1 cut(s) 856
BccI CCATC 4 cut(s) 163, 228, 244, 712
BceAI ACGGC 2 cut(s) 404, 848
BcgI CGANNNNNNTGC 4 cut(s) 632, 666, 841, 875
BciT130I CCWGG 2 cut(s) 212, 401
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 2 cut(s) 203, 234
BcoDI GTCTC 4 cut(s) 93, 365, 485, 699
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 343
BfoI RGCGCY 2 cut(s) 680, 686
BfuAI ACCTGC 1 cut(s) 634
BisI GCNGC 2 cut(s) 230, 845
BlsI GCNGC 2 cut(s) 231, 846
Bme1390I CCNGG 4 cut(s) 203, 212, 234, 401
BmgBI CACGTC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 2 cut(s) 572, 678
BmrFI CCNGG 4 cut(s) 203, 212, 234, 401
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 2 cut(s) 276, 763
BmuI ACTGGG 1 cut(s) 680
BoxI GACNNNNGTC 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 395
Bpu10I CCTNAGC 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 2 cut(s) 203, 234
BsaAI YACGTR 4 cut(s) 9, 32, 262, 325
BsaHI GRCGYC 5 cut(s) 158, 227, 299, 677, 870
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 211, 566
BsaWI WCCGGW 1 cut(s) 502
BsaXI ACNNNNNCTCC 4 cut(s) 178, 208, 484, 514
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 400
Bse118I RCCGGY 2 cut(s) 301, 679
Bse1I ACTGG 3 cut(s) 412, 675, 842
BseAI TCCGGA 1 cut(s) 502
BseBI CCWGG 2 cut(s) 212, 401
BseDI CCNNGG 2 cut(s) 211, 566
BseGI GGATG 5 cut(s) 220, 511, 723, 754, 778
BseLI CCNNNNNNNGG 2 cut(s) 301, 400
BseMII CTCAG 2 cut(s) 585, 873
BseNI ACTGG 3 cut(s) 412, 675, 842
BseSI GKGCMC 2 cut(s) 332, 638
BseXI GCAGC 1 cut(s) 856
BsgI GTGCAG 1 cut(s) 758
BshFI GGCC 4 cut(s) 206, 254, 552, 588
BshNI GGYRCC 1 cut(s) 676
BsiHKAI GWGCWC 3 cut(s) 332, 600, 638
BsiSI CCGG 7 cut(s) 203, 233, 302, 503, 680, 728, 809
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 2 cut(s) 301, 400
BsmAI GTCTC 4 cut(s) 93, 365, 485, 699
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 4 cut(s) 206, 254, 552, 588
Bso31I GGTCTC 1 cut(s) 365
Bsp1286I GDGCHC 3 cut(s) 332, 600, 638
Bsp13I TCCGGA 1 cut(s) 502
Bsp143I GATC 6 cut(s) 69, 366, 540, 570, 649, 658
BspACI CCGC 6 cut(s) 230, 278, 391, 704, 824, 830
BspANI GGCC 4 cut(s) 206, 254, 552, 588
BspCNI CTCAG 2 cut(s) 586, 874
BspEI TCCGGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 572, 678
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 2 cut(s) 565, 578
BspT107I GGYRCC 1 cut(s) 676
BspTNI GGTCTC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 278
BsrFI RCCGGY 2 cut(s) 301, 679
BsrI ACTGG 3 cut(s) 412, 675, 842
BssAI RCCGGY 2 cut(s) 301, 679
BssECI CCNNGG 2 cut(s) 211, 566
BssMI GATC 6 cut(s) 69, 366, 540, 570, 649, 658
BssNI GRCGYC 5 cut(s) 158, 227, 299, 677, 870
Bst2UI CCWGG 2 cut(s) 212, 401
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 737
BstACI GRCGYC 5 cut(s) 158, 227, 299, 677, 870
BstBAI YACGTR 4 cut(s) 9, 32, 262, 325
BstC8I GCNNGC 5 cut(s) 320, 550, 590, 681, 828
BstDEI CTNAG 2 cut(s) 594, 882
BstENI CCTNNNNNAGG 1 cut(s) 398
BstF5I GGATG 5 cut(s) 220, 511, 723, 754, 778
BstH2I RGCGCY 2 cut(s) 680, 686
BstHHI GCGC 3 cut(s) 419, 679, 685
BstKTI GATC 6 cut(s) 72, 369, 543, 573, 652, 661
BstMAI GTCTC 4 cut(s) 93, 365, 485, 699
BstMBI GATC 6 cut(s) 69, 366, 540, 570, 649, 658
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 2 cut(s) 212, 401
BstPAI GACNNNNGTC 1 cut(s) 126
BstSCI CCNGG 4 cut(s) 201, 210, 232, 399
BstSFI CTRYAG 1 cut(s) 343
BstSLI GKGCMC 2 cut(s) 332, 638
BstV1I GCAGC 1 cut(s) 856
BstX2I RGATCY 1 cut(s) 570
BstYI RGATCY 1 cut(s) 570
BsuRI GGCC 4 cut(s) 206, 254, 552, 588
BtrI CACGTC 1 cut(s) 362
BtsCI GGATG 5 cut(s) 220, 511, 723, 754, 778
BtsIMutI CAGTG 4 cut(s) 117, 419, 668, 879
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 5 cut(s) 320, 550, 590, 681, 828
CaiI CAGNNNCTG 1 cut(s) 295
CfoI GCGC 3 cut(s) 419, 679, 685
Cfr10I RCCGGY 2 cut(s) 301, 679
Cfr13I GGNCC 1 cut(s) 253
CseI GACGC 2 cut(s) 235, 307
Csp6I GTAC 2 cut(s) 149, 757
CspCI CAANNNNNGTGG 2 cut(s) 500, 535
CviAII CATG 4 cut(s) 355, 530, 639, 848
CviQI GTAC 2 cut(s) 149, 757
DdeI CTNAG 2 cut(s) 594, 882
DinI GGCGCC 1 cut(s) 678
DpnI GATC 6 cut(s) 71, 368, 542, 572, 651, 660
DpnII GATC 6 cut(s) 69, 366, 540, 570, 649, 658
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 1 cut(s) 737
EarI CTCTTC 1 cut(s) 737
EciI GGCGGA 1 cut(s) 845
Ecl136II GAGCTC 1 cut(s) 598
Eco147I AGGCCT 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 600
Eco31I GGTCTC 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 598
Eco72I CACGTG 3 cut(s) 9, 262, 325
EcoICRI GAGCTC 1 cut(s) 598
EcoNI CCTNNNNNAGG 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 210, 399
EcoT38I GRGCYC 1 cut(s) 600
EgeI GGCGCC 1 cut(s) 678
EheI GGCGCC 1 cut(s) 678
FaeI CATG 4 cut(s) 358, 533, 642, 851
FaqI GGGAC 1 cut(s) 277
FatI CATG 4 cut(s) 354, 529, 638, 847
FauI CCCGC 1 cut(s) 398
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 2 cut(s) 106, 423
Fnu4HI GCNGC 2 cut(s) 230, 845
FokI GGATG 5 cut(s) 207, 518, 730, 761, 785
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 2 cut(s) 230, 845
FspBI CTAG 1 cut(s) 86
GlaI GCGC 3 cut(s) 418, 678, 684
GluI GCNGC 2 cut(s) 230, 845
GsuI CTGGAG 1 cut(s) 395
HaeII RGCGCY 2 cut(s) 680, 686
HaeIII GGCC 4 cut(s) 206, 254, 552, 588
HapII CCGG 7 cut(s) 203, 233, 302, 503, 680, 728, 809
HgaI GACGC 2 cut(s) 235, 307
HhaI GCGC 3 cut(s) 419, 679, 685
Hin1I GRCGYC 5 cut(s) 158, 227, 299, 677, 870
Hin1II CATG 4 cut(s) 358, 533, 642, 851
Hin6I GCGC 3 cut(s) 417, 677, 683
HinP1I GCGC 3 cut(s) 417, 677, 683
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HinfI GANTC 5 cut(s) 193, 428, 437, 450, 493
HpaII CCGG 7 cut(s) 203, 233, 302, 503, 680, 728, 809
HphI GGTGA 5 cut(s) 316, 379, 668, 718, 733
Hpy166II GTNNAC 8 cut(s) 6, 107, 307, 330, 424, 636, 709, 868
Hpy188I TCNGA 7 cut(s) 69, 198, 225, 366, 433, 478, 570
Hpy188III TCNNGA 3 cut(s) 370, 503, 601
Hpy8I GTNNAC 8 cut(s) 6, 107, 307, 330, 424, 636, 709, 868
Hpy99I CGWCG 3 cut(s) 160, 163, 229
HpyAV CCTTC 2 cut(s) 217, 343
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 8 cut(s) 8, 31, 158, 261, 324, 361, 384, 870
HpyCH4V TGCA 5 cut(s) 117, 289, 330, 636, 739
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 2 cut(s) 594, 882
HpySE526I ACGT 8 cut(s) 8, 31, 158, 261, 324, 361, 384, 870
Hsp92I GRCGYC 5 cut(s) 158, 227, 299, 677, 870
Hsp92II CATG 4 cut(s) 358, 533, 642, 851
HspAI GCGC 3 cut(s) 417, 677, 683
KasI GGCGCC 1 cut(s) 676
Kpn2I TCCGGA 1 cut(s) 502
KroI GCCGGC 1 cut(s) 679
KroNI GCCGGC 1 cut(s) 681
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 6 cut(s) 69, 366, 540, 570, 649, 658
LmnI GCTCC 2 cut(s) 275, 730
Lsp1109I GCAGC 1 cut(s) 856
LweI GCATC 2 cut(s) 276, 763
MaeI CTAG 1 cut(s) 86
MaeII ACGT 8 cut(s) 8, 31, 158, 261, 324, 361, 384, 870
MaeIII GTNAC 4 cut(s) 88, 128, 179, 385
MalI GATC 6 cut(s) 71, 368, 542, 572, 651, 660
MbiI CCGCTC 1 cut(s) 278
MboI GATC 6 cut(s) 69, 366, 540, 570, 649, 658
MboII GAAGA 2 cut(s) 754, 901
MflI RGATCY 1 cut(s) 570
MhlI GDGCHC 3 cut(s) 332, 600, 638
MlsI TGGCCA 1 cut(s) 588
MluCI AATT 2 cut(s) 604, 626
MluNI TGGCCA 1 cut(s) 588
Mly113I GGCGCC 1 cut(s) 677
MlyI GAGTC 5 cut(s) 187, 422, 431, 444, 487
MmeI TCCRAC 2 cut(s) 246, 248
Mox20I TGGCCA 1 cut(s) 588
MreI CGCCGGCG 1 cut(s) 679
MroI TCCGGA 1 cut(s) 502
MroNI GCCGGC 1 cut(s) 679
MscI TGGCCA 1 cut(s) 588
MseI TTAA 1 cut(s) 910
MslI CAYNNNNRTG 4 cut(s) 77, 458, 528, 884
Msp20I TGGCCA 1 cut(s) 588
MspI CCGG 7 cut(s) 203, 233, 302, 503, 680, 728, 809
MspR9I CCNGG 4 cut(s) 203, 212, 234, 401
Mva1269I GAATGC 1 cut(s) 523
MvaI CCWGG 2 cut(s) 212, 401
MwoI GCNNNNNNNGC 1 cut(s) 238
NaeI GCCGGC 1 cut(s) 681
NarI GGCGCC 1 cut(s) 677
NciI CCSGG 2 cut(s) 203, 234
NdeII GATC 6 cut(s) 69, 366, 540, 570, 649, 658
NgoMIV GCCGGC 1 cut(s) 679
NlaIII CATG 4 cut(s) 358, 533, 642, 851
NlaIV GGNNCC 2 cut(s) 572, 678
NmeAIII GCCGAG 1 cut(s) 829
NmuCI GTSAC 3 cut(s) 128, 179, 385
PceI AGGCCT 1 cut(s) 552
PcsI WCGNNNNNNNCGW 2 cut(s) 432, 867
PctI GAATGC 1 cut(s) 523
PdiI GCCGGC 1 cut(s) 681
PkrI GCNGC 2 cut(s) 231, 846
PleI GAGTC 5 cut(s) 187, 422, 431, 444, 487
PluTI GGCGCC 1 cut(s) 680
PmaCI CACGTG 3 cut(s) 9, 262, 325
PmlI CACGTG 3 cut(s) 9, 262, 325
PpsI GAGTC 5 cut(s) 187, 422, 431, 444, 487
Ppu21I YACGTR 4 cut(s) 9, 32, 262, 325
PshAI GACNNNNGTC 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 600
Psp6I CCWGG 2 cut(s) 210, 399
PspCI CACGTG 3 cut(s) 9, 262, 325
PspGI CCWGG 2 cut(s) 210, 399
PspN4I GGNNCC 2 cut(s) 572, 678
PspPI GGNCC 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 295
PsuI RGATCY 1 cut(s) 570
RsaI GTAC 2 cut(s) 150, 758
RsaNI GTAC 2 cut(s) 149, 757
RseI CAYNNNNRTG 4 cut(s) 77, 458, 528, 884
SacI GAGCTC 1 cut(s) 600
SaqAI TTAA 1 cut(s) 910
SatI GCNGC 2 cut(s) 230, 845
Sau3AI GATC 6 cut(s) 69, 366, 540, 570, 649, 658
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 5 cut(s) 187, 422, 431, 444, 487
ScrFI CCNGG 4 cut(s) 203, 212, 234, 401
SduI GDGCHC 3 cut(s) 332, 600, 638
SfaNI GCATC 2 cut(s) 276, 763
SfcI CTRYAG 1 cut(s) 343
SfoI GGCGCC 1 cut(s) 678
SgrAI CRCCGGYG 2 cut(s) 301, 679
SmiMI CAYNNNNRTG 4 cut(s) 77, 458, 528, 884
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
SpeI ACTAGT 1 cut(s) 85
Sse9I AATT 2 cut(s) 604, 626
SseBI AGGCCT 1 cut(s) 552
SsiI CCGC 6 cut(s) 230, 278, 391, 704, 824, 830
SspDI GGCGCC 1 cut(s) 676
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 600
StuI AGGCCT 1 cut(s) 552
StyD4I CCNGG 4 cut(s) 201, 210, 232, 399
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 8 cut(s) 11, 34, 161, 264, 327, 364, 387, 873
TaqI TCGA 3 cut(s) 369, 652, 788
TasI AATT 2 cut(s) 604, 626
TatI WGTACW 1 cut(s) 756
TauI GCSGC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 910
Tru9I TTAA 1 cut(s) 910
TscAI CASTG 4 cut(s) 124, 419, 675, 886
TseFI GTSAC 3 cut(s) 128, 179, 385
TseI GCWGC 1 cut(s) 844
Tsp45I GTSAC 3 cut(s) 128, 179, 385
TspDTI ATGAA 2 cut(s) 95, 902
TspGWI ACGGA 1 cut(s) 785
TspRI CASTG 4 cut(s) 124, 419, 675, 886
VneI GTGCAC 2 cut(s) 328, 634
XagI CCTNNNNNAGG 1 cut(s) 398
XapI RAATTY 2 cut(s) 604, 626
XmiI GTMKAC 2 cut(s) 106, 423
XspI CTAG 1 cut(s) 86
ZraI GACGTC 2 cut(s) 159, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.