RLG00000031910

Protein of unknown function (DUF1264)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016212
Physical Location & Seq
Forward (+)
9405090 .. 9406035
946 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031910

Sequence Viewer

Length: 744 bp
ATGGCCTCGAGTGACAAGAGACCGACTCCGAACCTAGTCCTCGGCGGCGGGGACTCCACGACGCCGGGGAAGCCGATGACGATGGGGCAGCACGTGCTGGACAAAGGAGCGGAGATGATGCAGTCGCTGAAGCCGGTGAACCAGATGAGCCAGCACGTGTGCACCTTCGCTCTCTACAGCCACGACCCGACACGTCAGATCGAGACCCACCACTACGTCCATCGCCTCAACCACGACTTCCTCCAGTGTGCCGTCTACGACTCCGACGGCTCCCACGGCCGCCTCATCGGTGTGGAATACATAGTATCTGATCGGATTTTCGAGGCTTTGCCTCCGGAGGAGCAAAAACTATGGCACTCTCATGCTTATGAGATCAAAGCGGGTCTTTGGGTCAATCCCCGGGTCCCCGAGATGGTCGGCAGGCCGGAGCTCGAAAATTTGGCCAAAACTTATGGCAAATTCTGGTGCACATGGCAGGTTGATAGAGGTGATAGGCTTCCACTAGGGGCACCTGCCCTGATGGTGTCATCGCAACCGGTGAACTTAGGGCATGTGAAGCCAGAGCTGGTGGCGAGGAGGGATGACAAGTACAACATATCCACAGACGCCATAAGCCAGTCGAGGTTGGAGATCGGGGAGCCGGAGTGGAGCAATCCGCAGGCGGACTACTGGAAGAATCACGGCAAGGGTTTTGCCATCGACATTAAGAGCACTGAGATGAAGACGAGAGCGCCCTTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1264

Protein Analysis

248

Amino Acids

27.88

Weight (kDa)

6.45

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1264 PF06884 44 - 211 1.4e-68 Protein of unknown function (DUF1264)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45690
fragaria_vesca FvH4_3g06760
malus_domestica MD10G1271700.v1.1 MD17G1093800.v1.1
prunus_persica Prupe.4G070200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0012391
rosa_laevigata RLG00000031910
rosa_multiflora Rmu_sc0003469.1_g000010
rosa_roxburghii Rroxscaffold_1G00064270
rosa_rugosa Rorug05G0000800
rosa_samantha Rh5AG095200 Rh5BG091500 Rh5CG104400 Rh5DG090900
rosa_wichuraiana Rw5G008330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 2 cut(s) 466, 520
AccB1I GGYRCC 1 cut(s) 508
AccBSI CCGCTC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 255
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 7 cut(s) 45, 48, 110, 280, 380, 656, 662
AcoI YGGCCR 2 cut(s) 277, 441
AcsI RAATTY 2 cut(s) 436, 458
AcuI CTGAAG 1 cut(s) 149
AcvI CACGTG 2 cut(s) 94, 157
AcyI GRCGYC 2 cut(s) 62, 606
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 1 cut(s) 412
AflIII ACRYGT 2 cut(s) 156, 191
AgeI ACCGGT 1 cut(s) 535
AjiI CACGTC 1 cut(s) 194
AluBI AGCT 2 cut(s) 430, 565
AluI AGCT 2 cut(s) 430, 565
Alw21I GWGCWC 4 cut(s) 164, 432, 470, 713
Alw26I GTCTC 2 cut(s) 13, 197
Alw44I GTGCAC 2 cut(s) 160, 466
AlwNI CAGNNNCTG 1 cut(s) 127
Ama87I CYCGRG 3 cut(s) 7, 399, 407
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 4 cut(s) 3, 277, 422, 441
ApaLI GTGCAC 2 cut(s) 160, 466
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 436, 458
AsiGI ACCGGT 1 cut(s) 535
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 1 cut(s) 403
AsuC2I CCSGG 3 cut(s) 66, 400, 401
AsuHPI GGTGA 3 cut(s) 148, 500, 550
AvaI CYCGRG 3 cut(s) 7, 399, 407
AvaII GGWCC 1 cut(s) 403
BaeGI GKGCMC 3 cut(s) 164, 470, 511
BalI TGGCCA 1 cut(s) 443
BanI GGYRCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 432
BbrPI CACGTG 2 cut(s) 94, 157
BbsI GAAGAC 1 cut(s) 728
Bbv12I GWGCWC 4 cut(s) 164, 432, 470, 713
BbvI GCAGC 1 cut(s) 100
BccI CCATC 5 cut(s) 76, 228, 406, 514, 704
BceAI ACGGC 4 cut(s) 236, 283, 292, 697
BcnI CCSGG 3 cut(s) 66, 400, 401
BcoDI GTCTC 2 cut(s) 13, 197
BfaI CTAG 2 cut(s) 35, 503
BfmI CTRYAG 1 cut(s) 175
BfoI RGCGCY 1 cut(s) 734
BfuAI ACCTGC 2 cut(s) 466, 520
BisI GCNGC 3 cut(s) 46, 89, 280
BlsI GCNGC 3 cut(s) 47, 90, 281
Bme1390I CCNGG 3 cut(s) 66, 400, 401
Bme18I GGWCC 1 cut(s) 403
BmeT110I CYCGRG 3 cut(s) 7, 399, 407
BmgBI CACGTC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 5 cut(s) 271, 404, 405, 510, 639
BmrFI CCNGG 3 cut(s) 66, 400, 401
BmsI GCATC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 728
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 1 cut(s) 227
BpuMI CCSGG 3 cut(s) 66, 400, 401
BsaAI YACGTR 2 cut(s) 94, 157
BsaHI GRCGYC 2 cut(s) 62, 606
BsaI GGTCTC 2 cut(s) 13, 197
BsaJI CCNNGG 5 cut(s) 40, 65, 274, 398, 399
BsaWI WCCGGW 2 cut(s) 334, 535
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 2 cut(s) 133, 535
Bse1I ACTGG 3 cut(s) 244, 616, 674
BseAI TCCGGA 1 cut(s) 334
BseDI CCNNGG 5 cut(s) 40, 65, 274, 398, 399
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 3 cut(s) 244, 616, 674
BseRI GAGGAG 2 cut(s) 353, 589
BseSI GKGCMC 3 cut(s) 164, 470, 511
BseX3I CGGCCG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 4 cut(s) 5, 279, 424, 443
BshNI GGYRCC 1 cut(s) 508
BshTI ACCGGT 1 cut(s) 535
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 4 cut(s) 164, 432, 470, 713
BsiHKCI CYCGRG 3 cut(s) 7, 399, 407
BsiSI CCGG 7 cut(s) 65, 134, 335, 400, 425, 536, 641
BslFI GGGAC 2 cut(s) 65, 389
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 13, 197
BsmFI GGGAC 2 cut(s) 65, 389
BsnI GGCC 4 cut(s) 5, 279, 424, 443
Bso31I GGTCTC 2 cut(s) 13, 197
BsoBI CYCGRG 3 cut(s) 7, 399, 407
Bsp1286I GDGCHC 5 cut(s) 164, 432, 470, 511, 713
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 4 cut(s) 198, 310, 372, 630
BspACI CCGC 7 cut(s) 45, 48, 110, 280, 380, 656, 662
BspANI GGCC 4 cut(s) 5, 279, 424, 443
BspCNI CTCAG 1 cut(s) 706
BspEI TCCGGA 1 cut(s) 334
BspLI GGNNCC 5 cut(s) 271, 404, 405, 510, 639
BspMI ACCTGC 2 cut(s) 466, 520
BspT107I GGYRCC 1 cut(s) 508
BspTNI GGTCTC 2 cut(s) 13, 197
BsrBI CCGCTC 1 cut(s) 110
BsrFI RCCGGY 2 cut(s) 133, 535
BsrI ACTGG 3 cut(s) 244, 616, 674
BssAI RCCGGY 2 cut(s) 133, 535
BssECI CCNNGG 5 cut(s) 40, 65, 274, 398, 399
BssMI GATC 4 cut(s) 198, 310, 372, 630
BssNI GRCGYC 2 cut(s) 62, 606
BstACI GRCGYC 2 cut(s) 62, 606
BstAPI GCANNNNNTGC 1 cut(s) 94
BstBAI YACGTR 2 cut(s) 94, 157
BstC8I GCNNGC 3 cut(s) 152, 422, 660
BstDEI CTNAG 3 cut(s) 544, 714, 741
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 586
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 4 cut(s) 201, 313, 375, 633
BstMAI GTCTC 2 cut(s) 13, 197
BstMBI GATC 4 cut(s) 198, 310, 372, 630
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 4 cut(s) 70, 94, 276, 556
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 3 cut(s) 64, 398, 399
BstSFI CTRYAG 1 cut(s) 175
BstSLI GKGCMC 3 cut(s) 164, 470, 511
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 728
BstZI CGGCCG 1 cut(s) 277
BsuRI GGCC 4 cut(s) 5, 279, 424, 443
BtgI CCRYGG 1 cut(s) 274
BtgZI GCGATG 2 cut(s) 206, 513
BtrI CACGTC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 586
BtsIMutI CAGTG 2 cut(s) 251, 711
BveI ACCTGC 2 cut(s) 466, 520
Cac8I GCNNGC 3 cut(s) 152, 422, 660
CaiI CAGNNNCTG 1 cut(s) 127
CfoI GCGC 1 cut(s) 733
Cfr10I RCCGGY 2 cut(s) 133, 535
Cfr13I GGNCC 1 cut(s) 403
Cfr9I CCCGGG 1 cut(s) 399
CseI GACGC 2 cut(s) 70, 614
Csp6I GTAC 1 cut(s) 589
CspAI ACCGGT 1 cut(s) 535
CviAII CATG 3 cut(s) 362, 471, 551
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 3 cut(s) 544, 714, 741
DpnI GATC 4 cut(s) 200, 312, 374, 632
DpnII GATC 4 cut(s) 198, 310, 372, 630
EaeI YGGCCR 2 cut(s) 277, 441
EagI CGGCCG 1 cut(s) 277
EciI GGCGGA 1 cut(s) 677
Ecl136II GAGCTC 1 cut(s) 430
EclXI CGGCCG 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 432
Eco31I GGTCTC 2 cut(s) 13, 197
Eco47I GGWCC 1 cut(s) 403
Eco52I CGGCCG 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 149
Eco72I CACGTG 2 cut(s) 94, 157
Eco88I CYCGRG 3 cut(s) 7, 399, 407
EcoICRI GAGCTC 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 432
FaeI CATG 3 cut(s) 365, 474, 554
FaiI YATR 9 cut(s) 302, 352, 363, 369, 453, 472, 552, 596, 611
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 2 cut(s) 65, 389
FatI CATG 3 cut(s) 361, 470, 550
FauI CCCGC 2 cut(s) 41, 373
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 46, 89, 280
FokI GGATG 1 cut(s) 593
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 3 cut(s) 46, 89, 280
FspBI CTAG 2 cut(s) 35, 503
GlaI GCGC 1 cut(s) 732
GluI GCNGC 3 cut(s) 46, 89, 280
GsuI CTGGAG 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 4 cut(s) 5, 279, 424, 443
HapII CCGG 7 cut(s) 65, 134, 335, 400, 425, 536, 641
HgaI GACGC 2 cut(s) 70, 614
HhaI GCGC 1 cut(s) 733
Hin1I GRCGYC 2 cut(s) 62, 606
Hin1II CATG 3 cut(s) 365, 474, 554
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HinfI GANTC 4 cut(s) 25, 53, 260, 676
HpaII CCGG 7 cut(s) 65, 134, 335, 400, 425, 536, 641
HphI GGTGA 3 cut(s) 148, 500, 550
Hpy166II GTNNAC 5 cut(s) 139, 162, 256, 468, 541
Hpy188I TCNGA 5 cut(s) 30, 198, 265, 310, 315
Hpy188III TCNNGA 2 cut(s) 202, 335
Hpy8I GTNNAC 5 cut(s) 139, 162, 256, 468, 541
Hpy99I CGWCG 2 cut(s) 64, 269
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 4 cut(s) 93, 156, 193, 216
HpyCH4V TGCA 3 cut(s) 121, 162, 468
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 94, 276, 556
HpyF3I CTNAG 3 cut(s) 544, 714, 741
HpySE526I ACGT 4 cut(s) 93, 156, 193, 216
Hsp92I GRCGYC 2 cut(s) 62, 606
Hsp92II CATG 3 cut(s) 365, 474, 554
HspAI GCGC 1 cut(s) 731
KflI GGGWCCC 1 cut(s) 403
Kpn2I TCCGGA 1 cut(s) 334
Kzo9I GATC 4 cut(s) 198, 310, 372, 630
LmnI GCTCC 6 cut(s) 107, 275, 340, 427, 637, 648
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 108
MaeI CTAG 2 cut(s) 35, 503
MaeII ACGT 4 cut(s) 93, 156, 193, 216
MaeIII GTNAC 1 cut(s) 11
MalI GATC 4 cut(s) 200, 312, 374, 632
MbiI CCGCTC 1 cut(s) 110
MboI GATC 4 cut(s) 198, 310, 372, 630
MboII GAAGA 2 cut(s) 685, 733
MhlI GDGCHC 5 cut(s) 164, 432, 470, 511, 713
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 2 cut(s) 436, 458
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 3 cut(s) 19, 47, 254
MmeI TCCRAC 2 cut(s) 288, 606
Mox20I TGGCCA 1 cut(s) 443
MroI TCCGGA 1 cut(s) 334
MscI TGGCCA 1 cut(s) 443
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 4 cut(s) 290, 360, 366, 716
Msp20I TGGCCA 1 cut(s) 443
MspI CCGG 7 cut(s) 65, 134, 335, 400, 425, 536, 641
MspR9I CCNGG 3 cut(s) 66, 400, 401
MwoI GCNNNNNNNGC 4 cut(s) 70, 94, 276, 556
NciI CCSGG 3 cut(s) 66, 400, 401
NdeII GATC 4 cut(s) 198, 310, 372, 630
NlaIII CATG 3 cut(s) 365, 474, 554
NlaIV GGNNCC 5 cut(s) 271, 404, 405, 510, 639
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 11
NspI RCATGY 1 cut(s) 554
PaeR7I CTCGAG 1 cut(s) 7
PaqCI CACCTGC 1 cut(s) 520
PfeI GAWTC 1 cut(s) 676
PinAI ACCGGT 1 cut(s) 535
PkrI GCNGC 3 cut(s) 47, 90, 281
PleI GAGTC 3 cut(s) 19, 47, 254
PmaCI CACGTG 2 cut(s) 94, 157
PmlI CACGTG 2 cut(s) 94, 157
PpsI GAGTC 3 cut(s) 19, 47, 254
Ppu21I YACGTR 2 cut(s) 94, 157
PpuMI RGGWCCY 1 cut(s) 403
Psp124BI GAGCTC 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 403
PspCI CACGTG 2 cut(s) 94, 157
PspN4I GGNNCC 5 cut(s) 271, 404, 405, 510, 639
PspPI GGNCC 1 cut(s) 403
PspPPI RGGWCCY 1 cut(s) 403
PspXI VCTCGAGB 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 127
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
RseI CAYNNNNRTG 4 cut(s) 290, 360, 366, 716
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 3 cut(s) 46, 89, 280
Sau3AI GATC 4 cut(s) 198, 310, 372, 630
Sau96I GGNCC 1 cut(s) 403
SchI GAGTC 3 cut(s) 19, 47, 254
ScrFI CCNGG 3 cut(s) 66, 400, 401
SduI GDGCHC 5 cut(s) 164, 432, 470, 511, 713
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 1 cut(s) 175
Sfr274I CTCGAG 1 cut(s) 7
SinI GGWCC 1 cut(s) 403
SlaI CTCGAG 1 cut(s) 7
SmaI CCCGGG 1 cut(s) 401
SmiMI CAYNNNNRTG 4 cut(s) 290, 360, 366, 716
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 2 cut(s) 436, 458
SsiI CCGC 7 cut(s) 45, 48, 110, 280, 380, 656, 662
SspMI CTAG 2 cut(s) 35, 503
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 3 cut(s) 64, 398, 399
TaiI ACGT 4 cut(s) 96, 159, 196, 219
TaqI TCGA 6 cut(s) 8, 201, 321, 432, 620, 699
TaqII GACCGA 1 cut(s) 37
TasI AATT 2 cut(s) 436, 458
TatI WGTACW 1 cut(s) 588
TauI GCSGC 2 cut(s) 48, 282
TfiI GAWTC 1 cut(s) 676
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 2 cut(s) 251, 718
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 734
TspMI CCCGGG 1 cut(s) 399
TspRI CASTG 2 cut(s) 251, 718
VneI GTGCAC 2 cut(s) 160, 466
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 2 cut(s) 436, 458
XceI RCATGY 1 cut(s) 554
XhoI CTCGAG 1 cut(s) 7
XmaI CCCGGG 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 35, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.