MD17G1093800.v1.1

Protein of unknown function (DUF1264)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
7868833 .. 7869027
195 bp
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UTR
Exon/CDS
Intron
MD17G1093800.v1.1.491

Sequence Viewer

Length: 195 bp
ATGGTGAAGCCGGAGCTGTTGGAAACGAGGGATGCCAAATACAACATATCAACTGATGCCTTGAAGACATCGAGGGTGGATATTGCGGAGCCAGAGTGGATCAATCCACAGGCGGACTACTGGAAGCTGCATTGCAAGGGTTTTGCGGTGGACATTAAGCAAACTAAAATGAAGAAAATCACACCCTTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.45

Weight (kDa)

8.79

Isoelectric Point (pI)

27.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016212)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45690
fragaria_vesca FvH4_3g06760
malus_domestica MD10G1271700.v1.1 MD17G1093800.v1.1
prunus_persica Prupe.4G070200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0012391
rosa_laevigata RLG00000031910
rosa_multiflora Rmu_sc0003469.1_g000010
rosa_roxburghii Rroxscaffold_1G00064270
rosa_rugosa Rorug05G0000800
rosa_samantha Rh5AG095200 Rh5BG091500 Rh5CG104400 Rh5DG090900
rosa_wichuraiana Rw5G008330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 86, 113, 146
AclWI GGATC 1 cut(s) 107
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 2 cut(s) 16, 127
AluI AGCT 2 cut(s) 16, 127
AlwI GGATC 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 114
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 90
BmsI GCATC 2 cut(s) 22, 46
BpiI GAAGAC 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 130
BseGI GGATG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 11
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 3 cut(s) 86, 113, 146
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 130
BsrI ACTGG 1 cut(s) 125
BssMI GATC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 37
CviJI RGCY 4 cut(s) 10, 16, 91, 127
CviKI_1 RGCY 4 cut(s) 10, 16, 91, 127
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EciI GGCGGA 1 cut(s) 128
FaiI YATR 1 cut(s) 47
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
HapII CCGG 1 cut(s) 11
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 130, 135
HpyF3I CTNAG 1 cut(s) 192
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 2 cut(s) 13, 88
LpnPI CCDG 4 cut(s) 24, 95, 105, 106
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 2 cut(s) 22, 46
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 76, 184
MnlI CCTC 2 cut(s) 21, 66
MseI TTAA 1 cut(s) 156
MspI CCGG 1 cut(s) 11
NdeII GATC 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 90
PkrI GCNGC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 99
SetI ASST 2 cut(s) 18, 129
SfaNI GCATC 2 cut(s) 22, 46
SgeI CNNG 8 cut(s) 23, 39, 73, 84, 104, 122, 133, 148
SsiI CCGC 3 cut(s) 86, 113, 146
TaqI TCGA 1 cut(s) 71
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.