Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0018395

Physical Location & Seq

Genomic Coordinates Reverse (-)

4145090 .. 4148353

Gene Structure 3264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTTCAATGGAACTGTTCCTCCTGAGCTTGGGAATTTGGTTAACTTACAGAATCTCATTATCAGTACAAACAATCTCACAGGAGTGTTGCCAGTGAATCTCACTAGCCTGAGCAAATTAGCAGAACTGAGGATTAGTAGTAACAACTTCACTGGAAAAATTCCGCATTATTTCCAGAGTTGGAATCAACTTACGCAATTAGAGATCCAAGCTAGTGGTTTACAAGGCCCTATTCCATCTAGCATTTCTGTTTTGAGGAATTTAACAGAATTAAGGATCAGCGACTTAAATGGAGGGGGTTCAGTGTTTCCAGACTTAAGTAATATGACAAGCTTGCAAAGATTAATGCTGAGGAGCTGTAATTTAAATGGATCTATTCCTGATTTATCAGCAATGACAGCATTGAATATCTTAGAACTTAGCTTCAACAAACTGGAAGGAAGCACTCCTGATCTTCAAGAACTTGTTGAGACCAAACTGCAGTACTTGTATCTGACAAGCAACTTGCTCAATGGCTCTATTCCAGACTGGATTAAGAGCAGTGATAACCGCTACCAGATAGATGTTTCTTACAATAATTTTTTGGAGAGCTCTGAGCCAACTACGTGTACTGAATATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

208

Amino Acids

22.86

Weight (kDa)

4.61

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	6 - 93	7.6e-07	Leucine-rich repeat region
LRR_8	PF13855	15 - 70	4.6e-07	Leucine rich repeat
LRR_14	PF23598	55 - 164	1.1e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018395)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07020
malus_domestica	MD11G1267700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318511 RchiOBHm_Chr4g0401051 RchiOBHm_Chr4g0403621 RchiOBHm_Chr7g0219291
rosa_roxburghii	Rroxscaffold_2G00116630 Rroxscaffold_4G00280750
rosa_samantha	Rh2DG509500 Rh5BG207400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	164, 550
AclWI	GGATC	3 cut(s)	199, 284, 379
AcsI	RAATTY	3 cut(s)	34, 159, 259
AfaI	GTAC	3 cut(s)	67, 485, 610
AfiI	CCNNNNNNNGG	1 cut(s)	29
AflII	CTTAAG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	4 cut(s)	7, 406, 427, 458
AleI	CACNNNNGTG	1 cut(s)	83
AloI	GAACNNNNNNTCC	1 cut(s)	36
AluBI	AGCT	6 cut(s)	28, 212, 333, 357, 423, 591
AluI	AGCT	6 cut(s)	28, 212, 333, 357, 423, 591
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	3 cut(s)	199, 284, 379
AoxI	GGCC	1 cut(s)	226
ApoI	RAATTY	3 cut(s)	34, 159, 259
AseI	ATTAAT	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	593
BbvCI	CCTCAGC	1 cut(s)	350
BccI	CCATC	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	3 cut(s)	105, 213, 240
BfmI	CTRYAG	1 cut(s)	479
BfrI	CTTAAG	1 cut(s)	316
BmcAI	AGTACT	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	227
Bpu10I	CCTNAGC	3 cut(s)	24, 110, 350
BsaAI	YACGTR	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	464
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	4 cut(s)	92, 157, 438, 533
Bse3DI	GCAATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	5 cut(s)	15, 101, 119, 341, 585
BseNI	ACTGG	4 cut(s)	92, 157, 438, 533
BseRI	GAGGAG	1 cut(s)	367
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	593
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	228
Bso31I	GGTCTC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	4 cut(s)	204, 276, 371, 451
BspACI	CCGC	2 cut(s)	164, 550
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	5 cut(s)	16, 102, 120, 342, 586
BspMAI	CTGCAG	1 cut(s)	483
BspPI	GGATC	3 cut(s)	199, 284, 379
BspTI	CTTAAG	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	4 cut(s)	92, 157, 438, 533
BssMI	GATC	4 cut(s)	204, 276, 371, 451
Bst4CI	ACNGT	1 cut(s)	16
BstAFI	CTTAAG	1 cut(s)	316
BstBAI	YACGTR	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	7 cut(s)	24, 110, 128, 350, 412, 419, 594
BstKTI	GATC	4 cut(s)	207, 279, 374, 454
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	4 cut(s)	204, 276, 371, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	479
BstX2I	RGATCY	2 cut(s)	204, 371
BstXI	CCANNNNNNTGG	1 cut(s)	215
BstYI	RGATCY	2 cut(s)	204, 371
BsuRI	GGCC	1 cut(s)	228
BtsI	GCAGTG	1 cut(s)	547
BtsIMutI	CAGTG	4 cut(s)	99, 150, 309, 547
Cac8I	GCNNGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	66, 484, 609
CviQI	GTAC	3 cut(s)	66, 484, 609
DdeI	CTNAG	7 cut(s)	24, 110, 128, 350, 412, 419, 594
DpnI	GATC	4 cut(s)	206, 278, 373, 453
DpnII	GATC	4 cut(s)	204, 276, 371, 451
DraI	TTTAAA	1 cut(s)	366
Ecl136II	GAGCTC	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	591
EcoICRI	GAGCTC	1 cut(s)	591
EcoO109I	RGGNCCY	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	593
FaiI	YATR	2 cut(s)	326, 618
FriOI	GRGCYC	1 cut(s)	593
FspBI	CTAG	3 cut(s)	105, 213, 240
HaeIII	GGCC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	3 cut(s)	52, 97, 184
HpaI	GTTAAC	1 cut(s)	43
Hpy166II	GTNNAC	3 cut(s)	43, 221, 609
Hpy188I	TCNGA	2 cut(s)	495, 595
Hpy188III	TCNNGA	7 cut(s)	23, 175, 311, 380, 449, 458, 524
Hpy8I	GTNNAC	3 cut(s)	43, 221, 609
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	605
HpyCH4V	TGCA	2 cut(s)	337, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	7 cut(s)	24, 110, 128, 350, 412, 419, 594
HpySE526I	ACGT	1 cut(s)	605
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	204, 276, 371, 451
LmnI	GCTCC	1 cut(s)	354
MaeI	CTAG	3 cut(s)	105, 213, 240
MaeII	ACGT	1 cut(s)	605
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	4 cut(s)	206, 278, 373, 453
MboI	GATC	4 cut(s)	204, 276, 371, 451
MboII	GAAGA	1 cut(s)	446
MflI	RGATCY	2 cut(s)	204, 371
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	8 cut(s)	34, 116, 159, 197, 259, 269, 361, 577
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	5 cut(s)	30, 123, 249, 287, 345
MseI	TTAA	8 cut(s)	42, 263, 272, 287, 317, 344, 365, 534
MslI	CAYNNNNRTG	1 cut(s)	83
MspCI	CTTAAG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	4 cut(s)	204, 276, 371, 451
OliI	CACNNNNGTG	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	52, 97, 184
Ppu21I	YACGTR	1 cut(s)	606
PshBI	ATTAAT	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	593
PspPI	GGNCC	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	483
PsuI	RGATCY	2 cut(s)	204, 371
RsaI	GTAC	3 cut(s)	67, 485, 610
RsaNI	GTAC	3 cut(s)	66, 484, 609
RseI	CAYNNNNRTG	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	593
SaqAI	TTAA	8 cut(s)	42, 263, 272, 287, 317, 344, 365, 534
Sau3AI	GATC	4 cut(s)	204, 276, 371, 451
Sau96I	GGNCC	1 cut(s)	227
ScaI	AGTACT	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	593
SetI	ASST	7 cut(s)	30, 214, 335, 359, 425, 593, 608
SfcI	CTRYAG	1 cut(s)	479
SmiI	ATTTAAAT	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	8 cut(s)	34, 116, 159, 197, 259, 269, 361, 577
SsiI	CCGC	2 cut(s)	164, 550
SspMI	CTAG	3 cut(s)	105, 213, 240
SstI	GAGCTC	1 cut(s)	593
SwaI	ATTTAAAT	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	608
TasI	AATT	8 cut(s)	34, 116, 159, 197, 259, 269, 361, 577
TatI	WGTACW	3 cut(s)	65, 483, 608
TfiI	GAWTC	3 cut(s)	52, 97, 184
Tru1I	TTAA	8 cut(s)	42, 263, 272, 287, 317, 344, 365, 534
Tru9I	TTAA	8 cut(s)	42, 263, 272, 287, 317, 344, 365, 534
TscAI	CASTG	4 cut(s)	99, 157, 309, 547
TspRI	CASTG	4 cut(s)	99, 157, 309, 547
Vha464I	CTTAAG	1 cut(s)	316
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	3 cut(s)	34, 159, 259
XspI	CTAG	3 cut(s)	105, 213, 240
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.