MD11G1267700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0018395
Physical Location & Seq
Forward (+)
38291824 .. 38293969
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1267700.v1.1.491

Sequence Viewer

Length: 672 bp
ATGGAGCTCTCTTCCACTTCTGAACATGTACTATCCCTTCTTGGAAATCGTTTGACGGGTTCTATCCCCAAAGAGCTTGGAGACATCACCACCCTGAAGAGTTTGGACATCAGTTTCAATAATTTCTCTGGACCTCTCCCTCAGGAGCTTGGATCTTGGGCCAACATAGAAAGAATGCTGCTTTCCTCAAACAACTTTACCGGGGAGTTGCCAGAAACATTTGCAATGCTTACCAAAATAAAGGACTTTCGGGTTTGTGACAGTCACTTTTCCGGGCAGATACCTGATTTTATTGAGAACTGGACAAATCTTGAAAAACTAGTGATTCGGGCTAGCGGTTTGACAGGGCCAATTCCTTCTGGCATTTCTCTTTCGACAAACTTAACTGACTTGAGAATCACTGACTTGAGTGGACCTGAATCACCCATTCCTTCGCTGAATAAGATGAAAAACATGAGGACACTGATGTTGAGGAGTTGCAATCTGATTGGAAAGATACCTCCATATCTTGAGCAAATGAACAAATTGGTAACTTTAGACCTCAGCTTTAACAAGCTGACCGGAGAAATTCCAAGCAGCTTCGGTAGTCTACCATATGTGACTTATATATTCTTAACCGGAAACTTGCTGACTGGACCTGTACCTGCTTGGCCGCCGAGTCTCAACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.49

Weight (kDa)

5.43

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 151 - 210 1.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 652
AccI GTMKAC 1 cut(s) 589
AciI CCGC 2 cut(s) 336, 653
AclWI GGATC 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 650
AcsI RAATTY 1 cut(s) 567
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 2 cut(s) 30, 642
AflIII ACRYGT 2 cut(s) 25, 666
AgsI TTSAA 2 cut(s) 118, 314
AhlI ACTAGT 1 cut(s) 319
AluBI AGCT 6 cut(s) 7, 76, 148, 546, 556, 579
AluI AGCT 6 cut(s) 7, 76, 148, 546, 556, 579
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 75, 665
AlwI GGATC 1 cut(s) 160
AoxI GGCC 3 cut(s) 159, 347, 650
ApeKI GCWGC 2 cut(s) 178, 576
ApoI RAATTY 1 cut(s) 567
AspS9I GGNCC 5 cut(s) 131, 159, 347, 413, 635
AsuC2I CCSGG 2 cut(s) 202, 274
AsuHPI GGTGA 2 cut(s) 79, 414
AsuNHI GCTAGC 1 cut(s) 332
AvaII GGWCC 3 cut(s) 131, 413, 635
AxyI CCTNAGG 1 cut(s) 141
BanII GRGCYC 1 cut(s) 9
BarI GAAGNNNNNNTAC 2 cut(s) 21, 53
Bbv12I GWGCWC 1 cut(s) 9
BbvCI CCTCAGC 1 cut(s) 542
BbvI GCAGC 2 cut(s) 165, 588
BcnI CCSGG 2 cut(s) 202, 274
BcoDI GTCTC 2 cut(s) 75, 665
BcuI ACTAGT 1 cut(s) 319
BfaI CTAG 2 cut(s) 320, 333
BfuAI ACCTGC 1 cut(s) 652
BisI GCNGC 3 cut(s) 179, 577, 653
BlsI GCNGC 3 cut(s) 180, 578, 654
Bme1390I CCNGG 2 cut(s) 202, 274
Bme18I GGWCC 3 cut(s) 131, 413, 635
BmgT120I GGNCC 5 cut(s) 131, 159, 347, 413, 635
BmrFI CCNGG 2 cut(s) 202, 274
BmtI GCTAGC 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 542
BpuEI CTTGAG 3 cut(s) 412, 427, 530
BpuMI CCSGG 2 cut(s) 202, 274
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 2 cut(s) 560, 617
Bse1I ACTGG 2 cut(s) 305, 637
Bse21I CCTNAGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 2 cut(s) 155, 556
BseNI ACTGG 2 cut(s) 305, 637
BseRI GAGGAG 1 cut(s) 487
BseXI GCAGC 2 cut(s) 165, 588
BshFI GGCC 3 cut(s) 161, 349, 652
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 4 cut(s) 201, 273, 561, 618
BsmAI GTCTC 2 cut(s) 75, 665
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 3 cut(s) 161, 349, 652
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 2 cut(s) 336, 653
BspANI GGCC 3 cut(s) 161, 349, 652
BspCNI CTCAG 2 cut(s) 154, 555
BspMI ACCTGC 1 cut(s) 652
BspOI GCTAGC 1 cut(s) 336
BspPI GGATC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 2 cut(s) 305, 637
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 2 cut(s) 16, 92
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 141, 542
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 2 cut(s) 75, 665
BstMBI GATC 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 200, 272
BstV1I GCAGC 2 cut(s) 165, 588
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 3 cut(s) 161, 349, 652
BtsIMutI CAGTG 2 cut(s) 399, 461
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 1 cut(s) 334
Cfr13I GGNCC 5 cut(s) 131, 159, 347, 413, 635
Csp6I GTAC 2 cut(s) 29, 641
CviAII CATG 2 cut(s) 26, 454
CviQI GTAC 2 cut(s) 29, 641
DdeI CTNAG 2 cut(s) 141, 542
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 650
Eam1104I CTCTTC 2 cut(s) 16, 92
EarI CTCTTC 2 cut(s) 16, 92
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 3 cut(s) 131, 413, 635
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 116
Eco81I CCTNAGG 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 9
FaeI CATG 2 cut(s) 29, 457
FaiI YATR 8 cut(s) 27, 167, 455, 505, 595, 597, 606, 608
FatI CATG 2 cut(s) 25, 453
FauNDI CATATG 1 cut(s) 595
FblI GTMKAC 1 cut(s) 589
Fnu4HI GCNGC 3 cut(s) 179, 577, 653
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 179, 577, 653
FspBI CTAG 2 cut(s) 320, 333
GluI GCNGC 3 cut(s) 179, 577, 653
HaeIII GGCC 3 cut(s) 161, 349, 652
HapII CCGG 4 cut(s) 201, 273, 561, 618
Hin1II CATG 2 cut(s) 29, 457
HinfI GANTC 4 cut(s) 325, 396, 419, 658
HpaII CCGG 4 cut(s) 201, 273, 561, 618
HphI GGTGA 2 cut(s) 79, 414
Hpy166II GTNNAC 2 cut(s) 413, 590
Hpy188I TCNGA 2 cut(s) 22, 486
Hpy188III TCNNGA 4 cut(s) 129, 143, 311, 509
Hpy8I GTNNAC 2 cut(s) 413, 590
HpyAV CCTTC 3 cut(s) 47, 366, 441
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 666
HpyCH4V TGCA 2 cut(s) 224, 480
HpyF3I CTNAG 2 cut(s) 141, 542
HpySE526I ACGT 1 cut(s) 666
Hsp92II CATG 2 cut(s) 29, 457
Kzo9I GATC 1 cut(s) 152
LmnI GCTCC 2 cut(s) 4, 145
Lsp1109I GCAGC 2 cut(s) 165, 588
MaeI CTAG 2 cut(s) 320, 333
MaeII ACGT 1 cut(s) 666
MaeIII GTNAC 4 cut(s) 257, 263, 529, 598
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 2 cut(s) 3, 109
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 4 cut(s) 121, 351, 524, 567
MlyI GAGTC 1 cut(s) 667
MnlI CCTC 7 cut(s) 144, 150, 196, 450, 465, 510, 551
MseI TTAA 3 cut(s) 383, 549, 614
MspI CCGG 4 cut(s) 201, 273, 561, 618
MspR9I CCNGG 2 cut(s) 202, 274
Mva1269I GAATGC 1 cut(s) 180
NciI CCSGG 2 cut(s) 202, 274
NdeI CATATG 1 cut(s) 595
NdeII GATC 1 cut(s) 152
NheI GCTAGC 1 cut(s) 332
NlaIII CATG 2 cut(s) 29, 457
NmuCI GTSAC 3 cut(s) 257, 263, 598
NspI RCATGY 1 cut(s) 29
PciI ACATGT 1 cut(s) 25
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 3 cut(s) 325, 396, 419
PkrI GCNGC 3 cut(s) 180, 578, 654
PleI GAGTC 1 cut(s) 666
PpsI GAGTC 1 cut(s) 666
PscI ACATGT 1 cut(s) 25
Psp124BI GAGCTC 1 cut(s) 9
PspPI GGNCC 5 cut(s) 131, 159, 347, 413, 635
PsuI RGATCY 1 cut(s) 152
RsaI GTAC 2 cut(s) 30, 642
RsaNI GTAC 2 cut(s) 29, 641
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 383, 549, 614
SatI GCNGC 3 cut(s) 179, 577, 653
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 5 cut(s) 131, 159, 347, 413, 635
SchI GAGTC 1 cut(s) 667
ScrFI CCNGG 2 cut(s) 202, 274
SduI GDGCHC 1 cut(s) 9
SinI GGWCC 3 cut(s) 131, 413, 635
SmlI CTYRAG 3 cut(s) 391, 406, 509
SmoI CTYRAG 3 cut(s) 391, 406, 509
SpeI ACTAGT 1 cut(s) 319
Sse9I AATT 4 cut(s) 121, 351, 524, 567
SsiI CCGC 2 cut(s) 336, 653
SspMI CTAG 2 cut(s) 320, 333
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 200, 272
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 669
TaqI TCGA 1 cut(s) 374
TasI AATT 4 cut(s) 121, 351, 524, 567
TatI WGTACW 1 cut(s) 28
TauI GCSGC 1 cut(s) 655
TfiI GAWTC 3 cut(s) 325, 396, 419
Tru1I TTAA 3 cut(s) 383, 549, 614
Tru9I TTAA 3 cut(s) 383, 549, 614
TscAI CASTG 2 cut(s) 406, 468
TseFI GTSAC 3 cut(s) 257, 263, 598
TseI GCWGC 2 cut(s) 178, 576
Tsp45I GTSAC 3 cut(s) 257, 263, 598
TspDTI ATGAA 2 cut(s) 461, 533
TspRI CASTG 2 cut(s) 406, 468
VpaK11BI GGWCC 3 cut(s) 131, 413, 635
XapI RAATTY 1 cut(s) 567
XceI RCATGY 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 589
XspI CTAG 2 cut(s) 320, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.