Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018395

Physical Location & Seq

Genomic Coordinates Reverse (-)

43876805 .. 43879072

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTTTGTTTTGTCGACAGCTTTCCCACCACTCTTACGATTGATCAACCTCGCTCCCGGCCTAAAGGCAATTCTCAGCTTCAAACTTCCCGATTAGAGGTCCGACAAGGAGAATATGTTTTCAGGAACCTTGAGACTAACATGTTTTCCGGAACTGTTCCTCCCGAGCTTGGGAAGTTGGTTAACTTGCAGAATCTCATAAATGATTGGTCAAATTGCTTTGTTATTATTGCTAGTTCAATGCACGACATGATCGTGACTATATTGCCCAAGTACTTTATTCTATCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

97

Amino Acids

11.02

Weight (kDa)

6.54

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018395)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07020
malus_domestica	MD11G1267700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0318511 RchiOBHm_Chr4g0401051 RchiOBHm_Chr4g0403621 RchiOBHm_Chr7g0219291
rosa_roxburghii	Rroxscaffold_2G00116630 Rroxscaffold_4G00280750
rosa_samantha	Rh2DG509500 Rh5BG207400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	15
AccIII	TCCGGA	1 cut(s)	149
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	3 cut(s)	97, 170, 171
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	83, 240
AloI	GAACNNNNNNTCC	2 cut(s)	145, 177
AluBI	AGCT	3 cut(s)	21, 79, 169
AluI	AGCT	3 cut(s)	21, 79, 169
Alw26I	GTCTC	1 cut(s)	128
Ama87I	CYCGRG	1 cut(s)	164
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	58
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	100
BclI	TGATCA	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	234
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 145, 175
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 170, 171
BseAI	TCCGGA	1 cut(s)	149
BseLI	CCNNNNNNNGG	3 cut(s)	97, 170, 171
BseMII	CTCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	58, 150
BslI	CCNNNNNNNGG	3 cut(s)	97, 170, 171
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	61
BsoBI	CYCGRG	1 cut(s)	164
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	43, 252
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	128
BssMI	GATC	2 cut(s)	43, 252
Bst4CI	ACNGT	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	75
BstKTI	GATC	2 cut(s)	46, 255
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	43, 252
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	3 cut(s)	142, 250, 291
CviJI	RGCY	4 cut(s)	21, 61, 79, 169
CviKI_1	RGCY	4 cut(s)	21, 61, 79, 169
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	2 cut(s)	45, 254
DpnII	GATC	2 cut(s)	43, 252
Eco47I	GGWCC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	164
FaeI	CATG	3 cut(s)	145, 253, 294
FaiI	YATR	6 cut(s)	117, 143, 200, 251, 263, 292
FatI	CATG	3 cut(s)	141, 249, 290
FbaI	TGATCA	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	2 cut(s)	58, 150
Hin1II	CATG	3 cut(s)	145, 253, 294
HincII	GTYRAC	2 cut(s)	16, 184
HindII	GTYRAC	2 cut(s)	16, 184
HinfI	GANTC	1 cut(s)	193
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	2 cut(s)	58, 150
Hpy166II	GTNNAC	2 cut(s)	16, 184
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	5 cut(s)	90, 124, 150, 164, 256
Hpy8I	GTNNAC	2 cut(s)	16, 184
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	190, 244
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	145, 253, 294
Kpn2I	TCCGGA	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	43
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	43, 252
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	3 cut(s)	71, 109, 163
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	2 cut(s)	45, 254
MboI	GATC	2 cut(s)	43, 252
MluCI	AATT	2 cut(s)	70, 214
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	3 cut(s)	60, 91, 171
MroI	TCCGGA	1 cut(s)	149
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	2 cut(s)	58, 150
MspR9I	CCNGG	1 cut(s)	58
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	43, 252
NlaIII	CATG	3 cut(s)	145, 253, 294
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	145
PciI	ACATGT	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	100
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	254
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	43, 252
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	6 cut(s)	23, 52, 81, 102, 132, 171
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	70, 214
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	15
TasI	AATT	2 cut(s)	70, 214
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	100
XceI	RCATGY	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	1 cut(s)	234
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.