FvH4_3g07190

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012797
Physical Location & Seq
Forward (+)
4259261 .. 4261713
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07190.t1

Sequence Viewer

Length: 1527 bp
ATGCACATCTTAAACTTCATCAATGGTCTTGTTGTTCTTTTTCTGGGGCAGCTTTTGTTTGAAGGGGTTGTGAATCACAAGAGTGAGTACATATCTGCAGTTGGTGATCCAGAAATGAGAAGAGACAGTCTTCGGGTTGCGATAGAGTCATGGAATCAGTGCAATGAGGTTGGACAAGACAATCCTCAGACAGGTAGCCCAAGAGCTGCTGATTGCTTTGACATATACAAAGTTTATTCTCCACAGACAAACAGTGATGACAGTTGCTCTATCTGCAATGAGATTCCCTATGTATTAGTCCACAGAGTTACAGATGCAGACAACAAGTTAAGGACAGGAGAGCCGTTTCTTGGTCTACAACCGAAGTCTCAGTTTGATGTAGACCTTTACGCAGAGGATAAGGAACTCTATTTGGGATCTAAATGTGAAGTTGATGACACCCCCAATCCATGGCAGTTTTGGATGATCATGCTCAAGAGTGGCAACATGGACACTAACGCTGCCAAATGCCCTAAAAATGGCCACAAAGTTGGACCATTTAGGCCTGACTACAATGCCTTTCCTTGTTTCGGAGAGGGCTGCATGAATCAGCCATATATATACCATGACTATACCAAGTTGCAATGGCCTGATATAACTACTCTAAAGGGAAGGTTTTTCGGGTCGTGGGACTCAAATTGGGATATGAGTAGAGGAATGGTGGAGAACACTTCTTACTATTCTGTTACTTGGGAAAAGAAAATTGGAGAAGGAAGTTGGGTTTTCCACCATGTCTTGAGGACTTCAGCAAAGTATCCATGGCTGATGCTTTACTTGAGATCAGATGCCACACATGGATTTTCTGGTGGCTACCATTACTCTACAAGAGGGATGTCCAAAATTATTCCAGAATCACCAAATTTTAAAGTGAGGTTCACCTTGAATGTGATCAAGGGAGGGGGTCCTAGCAGCCAGTTCTACCTAATGGACATGGGGAGCTGTTGGAAGAACAATGGGCAGCCTTGTGATGGCAATGTGACTTCAGATGTCACCAGATACAGTGAAATGATCATAAATCCACAAGCATCTGCATGGTGCAAGCCAGAAAAATTCGATATGTGTCCACCTTACCACACATTCTCCAACGGAACTAGAGTTCATCGAAATGACACATCTCGCTTCCCATATGCAGCTTATCACCTGCACTGCTCACCCGGGAATGCAGAGCATCTTGAGGCTCTTTCTAGTCTGTGTGATCCATATAGCAATCCTCAGCCTCAGGAGATACTTCAAATCTTGCCACACCCAGTTTGGGGTGAGTATGGGTACCCTACAAAGCAAGGGGAGGGTTGGATAGGGGATTCAAGGACTTGGGAGCTTGATGTTGGGAGGTTATCACAATCACTTTACTTTTACCAGGATCCAGGAACTAGACCAGCTAGAAGGCAATGGACGTCTATCGATTTGGGGACTGAAATTTTCAAAGATCCTGATCAAGTTGCTGAGTGGACTGTTAGTGACTTCGACATACTTGTGCTTGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

509

Amino Acids

58.02

Weight (kDa)

5.39

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 31 - 505 1.2e-255 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17030
fragaria_vesca FvH4_3g07190 FvH4_3g07210
malus_domestica MD00G1008000.v1.1
prunus_persica Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1
pyrus_communis pycom05g27320
rosa_chinensis RchiOBHm_Chr5g0011941
rosa_laevigata RLG00000031871
rosa_multiflora Rmu_sc0001475.1_g000003
rosa_roxburghii Rroxscaffold_1G00064650
rosa_rugosa Rorug04G0460100
rosa_samantha Rh5AG091700 Rh5BG087500 Rh5CG101400 Rh5DG088100
rosa_wichuraiana Rw5G008000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1188
AatII GACGTC 1 cut(s) 1436
Acc36I ACCTGC 1 cut(s) 1188
Acc65I GGTACC 1 cut(s) 1305
AccB1I GGYRCC 1 cut(s) 1305
AccB7I CCANNNNNTGG 1 cut(s) 450
AccI GTMKAC 2 cut(s) 355, 381
AclWI GGATC 6 cut(s) 101, 424, 1229, 1394, 1407, 1460
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 3 cut(s) 898, 1088, 1455
AcuI CTGAAG 2 cut(s) 768, 1005
AcyI GRCGYC 1 cut(s) 1433
AfaI GTAC 2 cut(s) 89, 1307
AfiI CCNNNNNNNGG 8 cut(s) 191, 350, 450, 518, 569, 1007, 1291, 1292
AgsI TTSAA 5 cut(s) 62, 922, 1271, 1344, 1462
AjnI CCWGG 2 cut(s) 1395, 1402
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
AleI CACNNNNGTG 1 cut(s) 81
AloI GAACNNNNNNTCC 2 cut(s) 1119, 1151
AluBI AGCT 6 cut(s) 52, 206, 978, 1172, 1357, 1418
AluI AGCT 6 cut(s) 52, 206, 978, 1172, 1357, 1418
Alw26I GTCTC 2 cut(s) 117, 372
AlwI GGATC 6 cut(s) 101, 424, 1229, 1394, 1407, 1460
Ama87I CYCGRG 1 cut(s) 1193
AoxI GGCC 3 cut(s) 520, 542, 626
ApeKI GCWGC 7 cut(s) 49, 206, 500, 579, 948, 997, 1169
ApoI RAATTY 3 cut(s) 898, 1088, 1455
Asp718I GGTACC 1 cut(s) 1305
AspS9I GGNCC 2 cut(s) 533, 941
AsuC2I CCSGG 2 cut(s) 1194, 1195
AsuHPI GGTGA 7 cut(s) 116, 885, 907, 1021, 1169, 1182, 1307
AvaI CYCGRG 1 cut(s) 1193
AvaII GGWCC 2 cut(s) 533, 941
AxyI CCTNAGG 1 cut(s) 1257
BalI TGGCCA 1 cut(s) 522
BamHI GGATCC 1 cut(s) 1399
BanI GGYRCC 1 cut(s) 1305
BbsI GAAGAC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 1251
BbvI GCAGC 7 cut(s) 61, 193, 487, 566, 960, 1009, 1181
BccI CCATC 1 cut(s) 1001
BceAI ACGGC 1 cut(s) 328
BciT130I CCWGG 2 cut(s) 1397, 1404
BciVI GTATCC 1 cut(s) 804
BclI TGATCA 5 cut(s) 465, 927, 1047, 1471, 1519
BcnI CCSGG 2 cut(s) 1194, 1195
BcoDI GTCTC 2 cut(s) 117, 372
BfaI CTAG 5 cut(s) 945, 1131, 1224, 1410, 1419
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 1188
BfuI GTATCC 1 cut(s) 804
BisI GCNGC 7 cut(s) 50, 207, 501, 580, 949, 998, 1170
BlsI GCNGC 7 cut(s) 51, 208, 502, 581, 950, 999, 1171
Bme1390I CCNGG 4 cut(s) 1194, 1195, 1397, 1404
Bme18I GGWCC 2 cut(s) 533, 941
BmeT110I CYCGRG 1 cut(s) 1193
BmgT120I GGNCC 2 cut(s) 533, 941
BmiI GGNNCC 3 cut(s) 942, 1307, 1401
BmrFI CCNGG 4 cut(s) 1194, 1195, 1397, 1404
BmrI ACTGGG 1 cut(s) 1280
BmsI GCATC 5 cut(s) 304, 795, 814, 1073, 1216
BmuI ACTGGG 1 cut(s) 1280
BpiI GAAGAC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 1251
BpuEI CTTGAG 4 cut(s) 458, 796, 835, 1232
BpuMI CCSGG 2 cut(s) 1194, 1195
Bsa29I ATCGAT 1 cut(s) 1440
BsaBI GATNNNNATC 1 cut(s) 1470
BsaHI GRCGYC 1 cut(s) 1433
BsaJI CCNNGG 3 cut(s) 449, 797, 1193
BsaXI ACNNNNNCTCC 2 cut(s) 1103, 1133
Bsc4I CCNNNNNNNGG 8 cut(s) 191, 350, 450, 518, 569, 1007, 1291, 1292
Bse1I ACTGG 2 cut(s) 952, 1286
Bse21I CCTNAGG 1 cut(s) 1257
Bse3DI GCAATG 5 cut(s) 169, 283, 629, 1018, 1433
Bse8I GATNNNNATC 1 cut(s) 1470
BseBI CCWGG 2 cut(s) 1397, 1404
BseCI ATCGAT 1 cut(s) 1440
BseDI CCNNGG 3 cut(s) 449, 797, 1193
BseGI GGATG 2 cut(s) 468, 876
BseJI GATNNNNATC 1 cut(s) 1470
BseLI CCNNNNNNNGG 8 cut(s) 191, 350, 450, 518, 569, 1007, 1291, 1292
BseMI GCAATG 5 cut(s) 169, 283, 629, 1018, 1433
BseMII CTCAG 5 cut(s) 200, 383, 1265, 1271, 1473
BseNI ACTGG 2 cut(s) 952, 1286
BseXI GCAGC 7 cut(s) 61, 193, 487, 566, 960, 1009, 1181
BsgI GTGCAG 1 cut(s) 1166
BshFI GGCC 3 cut(s) 522, 544, 628
BshNI GGYRCC 1 cut(s) 1305
BshVI ATCGAT 1 cut(s) 1440
BsiHKCI CYCGRG 1 cut(s) 1193
BsiSI CCGG 1 cut(s) 1194
BslFI GGGAC 2 cut(s) 683, 1462
BslI CCNNNNNNNGG 8 cut(s) 191, 350, 450, 518, 569, 1007, 1291, 1292
BsmAI GTCTC 2 cut(s) 117, 372
BsmFI GGGAC 2 cut(s) 683, 1462
BsmI GAATGC 1 cut(s) 1204
BsnI GGCC 3 cut(s) 522, 544, 628
BsoBI CYCGRG 1 cut(s) 1193
Bsp19I CCATGG 2 cut(s) 449, 797
BspANI GGCC 3 cut(s) 522, 544, 628
BspCNI CTCAG 5 cut(s) 199, 382, 1264, 1270, 1474
BspDI ATCGAT 1 cut(s) 1440
BspLI GGNNCC 3 cut(s) 942, 1307, 1401
BspMAI CTGCAG 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 1188
BspPI GGATC 6 cut(s) 101, 424, 1229, 1394, 1407, 1460
BspT107I GGYRCC 1 cut(s) 1305
BsrDI GCAATG 5 cut(s) 169, 283, 629, 1018, 1433
BsrI ACTGG 2 cut(s) 952, 1286
BssECI CCNNGG 3 cut(s) 449, 797, 1193
BssNI GRCGYC 1 cut(s) 1433
BssT1I CCWWGG 2 cut(s) 449, 797
Bst2UI CCWGG 2 cut(s) 1397, 1404
Bst4CI ACNGT 5 cut(s) 128, 254, 263, 1040, 1492
Bst6I CTCTTC 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 1433
BstC8I GCNNGC 1 cut(s) 1079
BstDEI CTNAG 5 cut(s) 186, 369, 1251, 1257, 1482
BstDSI CCRYGG 2 cut(s) 449, 797
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 468, 876
BstMAI GTCTC 2 cut(s) 117, 372
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 2 cut(s) 1397, 1404
BstSCI CCNGG 4 cut(s) 1192, 1193, 1395, 1402
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 7 cut(s) 61, 193, 487, 566, 960, 1009, 1181
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 3 cut(s) 416, 1399, 1465
BstXI CCANNNNNNTGG 1 cut(s) 530
BstYI RGATCY 3 cut(s) 416, 1399, 1465
Bsu15I ATCGAT 1 cut(s) 1440
Bsu36I CCTNAGG 1 cut(s) 1257
BsuI GTATCC 1 cut(s) 804
BsuRI GGCC 3 cut(s) 522, 544, 628
BsuTUI ATCGAT 1 cut(s) 1440
BtgI CCRYGG 2 cut(s) 449, 797
BtsCI GGATG 2 cut(s) 468, 876
BtsI GCAGTG 1 cut(s) 1183
BtsIMutI CAGTG 4 cut(s) 164, 259, 1045, 1183
BveI ACCTGC 1 cut(s) 1188
Cac8I GCNNGC 1 cut(s) 1079
Cfr13I GGNCC 2 cut(s) 533, 941
Cfr9I CCCGGG 1 cut(s) 1193
ClaI ATCGAT 1 cut(s) 1440
Csp6I GTAC 2 cut(s) 88, 1306
CviQI GTAC 2 cut(s) 88, 1306
DdeI CTNAG 5 cut(s) 186, 369, 1251, 1257, 1482
DraI TTTAAA 1 cut(s) 904
EaeI YGGCCR 1 cut(s) 520
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 449, 797
Eco147I AGGCCT 1 cut(s) 544
Eco47I GGWCC 2 cut(s) 533, 941
Eco57I CTGAAG 2 cut(s) 768, 1005
Eco81I CCTNAGG 1 cut(s) 1257
Eco88I CYCGRG 1 cut(s) 1193
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 941
EcoRII CCWGG 2 cut(s) 1395, 1402
EcoT14I CCWWGG 2 cut(s) 449, 797
ErhI CCWWGG 2 cut(s) 449, 797
FaqI GGGAC 2 cut(s) 683, 1462
FauNDI CATATG 1 cut(s) 1165
FbaI TGATCA 5 cut(s) 465, 927, 1047, 1471, 1519
FblI GTMKAC 2 cut(s) 355, 381
Fnu4HI GCNGC 7 cut(s) 50, 207, 501, 580, 949, 998, 1170
FokI GGATG 2 cut(s) 475, 883
Fsp4HI GCNGC 7 cut(s) 50, 207, 501, 580, 949, 998, 1170
FspBI CTAG 5 cut(s) 945, 1131, 1224, 1410, 1419
GluI GCNGC 7 cut(s) 50, 207, 501, 580, 949, 998, 1170
HaeIII GGCC 3 cut(s) 522, 544, 628
HapII CCGG 1 cut(s) 1194
Hin1I GRCGYC 1 cut(s) 1433
HinfI GANTC 8 cut(s) 73, 146, 154, 283, 586, 671, 890, 1340
HpaII CCGG 1 cut(s) 1194
HphI GGTGA 7 cut(s) 116, 885, 907, 1021, 1169, 1182, 1307
Hpy166II GTNNAC 6 cut(s) 301, 356, 382, 915, 1103, 1488
Hpy188I TCNGA 4 cut(s) 189, 572, 823, 1024
Hpy188III TCNNGA 7 cut(s) 110, 475, 775, 887, 1211, 1259, 1469
Hpy8I GTNNAC 6 cut(s) 301, 356, 382, 915, 1103, 1488
HpyAV CCTTC 4 cut(s) 56, 645, 743, 1416
HpyCH4III ACNGT 5 cut(s) 128, 254, 263, 1040, 1492
HpyCH4IV ACGT 1 cut(s) 1433
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpyF3I CTNAG 5 cut(s) 186, 369, 1251, 1257, 1482
HpySE526I ACGT 1 cut(s) 1433
Hsp92I GRCGYC 1 cut(s) 1433
KpnI GGTACC 1 cut(s) 1309
Ksp22I TGATCA 5 cut(s) 465, 927, 1047, 1471, 1519
LmnI GCTCC 2 cut(s) 975, 1354
Lsp1109I GCAGC 7 cut(s) 61, 193, 487, 566, 960, 1009, 1181
LweI GCATC 5 cut(s) 304, 795, 814, 1073, 1216
MaeI CTAG 5 cut(s) 945, 1131, 1224, 1410, 1419
MaeII ACGT 1 cut(s) 1433
MaeIII GTNAC 5 cut(s) 307, 724, 1015, 1027, 1496
MboII GAAGA 3 cut(s) 122, 132, 997
MflI RGATCY 3 cut(s) 416, 1399, 1465
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 6 cut(s) 676, 741, 879, 898, 1088, 1455
MluNI TGGCCA 1 cut(s) 522
MlyI GAGTC 2 cut(s) 155, 665
MmeI TCCRAC 5 cut(s) 151, 511, 962, 1146, 1310
Mox20I TGGCCA 1 cut(s) 522
MscI TGGCCA 1 cut(s) 522
MseI TTAA 3 cut(s) 11, 329, 903
MslI CAYNNNNRTG 4 cut(s) 81, 1069, 1143, 1511
Msp20I TGGCCA 1 cut(s) 522
MspI CCGG 1 cut(s) 1194
MspR9I CCNGG 4 cut(s) 1194, 1195, 1397, 1404
Mva1269I GAATGC 1 cut(s) 1204
MvaI CCWGG 2 cut(s) 1397, 1404
MwoI GCNNNNNNNGC 1 cut(s) 273
NciI CCSGG 2 cut(s) 1194, 1195
NcoI CCATGG 2 cut(s) 449, 797
NdeI CATATG 1 cut(s) 1165
NlaIV GGNNCC 3 cut(s) 942, 1307, 1401
NmuCI GTSAC 3 cut(s) 1015, 1027, 1496
OliI CACNNNNGTG 1 cut(s) 81
PaqCI CACCTGC 1 cut(s) 1188
PceI AGGCCT 1 cut(s) 544
PctI GAATGC 1 cut(s) 1204
PfeI GAWTC 6 cut(s) 73, 154, 283, 586, 890, 1340
PflMI CCANNNNNTGG 1 cut(s) 450
PfoI TCCNGGA 1 cut(s) 1402
PkrI GCNGC 7 cut(s) 51, 208, 502, 581, 950, 999, 1171
PleI GAGTC 2 cut(s) 154, 665
PpsI GAGTC 2 cut(s) 154, 665
PpuMI RGGWCCY 1 cut(s) 941
Psp5II RGGWCCY 1 cut(s) 941
Psp6I CCWGG 2 cut(s) 1395, 1402
PspGI CCWGG 2 cut(s) 1395, 1402
PspN4I GGNNCC 3 cut(s) 942, 1307, 1401
PspPI GGNCC 2 cut(s) 533, 941
PspPPI RGGWCCY 1 cut(s) 941
PsrI GAACNNNNNNTAC 2 cut(s) 698, 730
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 3 cut(s) 416, 1399, 1465
RsaI GTAC 2 cut(s) 89, 1307
RsaNI GTAC 2 cut(s) 88, 1306
RseI CAYNNNNRTG 4 cut(s) 81, 1069, 1143, 1511
SaqAI TTAA 3 cut(s) 11, 329, 903
SatI GCNGC 7 cut(s) 50, 207, 501, 580, 949, 998, 1170
Sau96I GGNCC 2 cut(s) 533, 941
SchI GAGTC 2 cut(s) 155, 665
ScrFI CCNGG 4 cut(s) 1194, 1195, 1397, 1404
SfaNI GCATC 5 cut(s) 304, 795, 814, 1073, 1216
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 2 cut(s) 533, 941
SmaI CCCGGG 1 cut(s) 1195
SmiMI CAYNNNNRTG 4 cut(s) 81, 1069, 1143, 1511
SmlI CTYRAG 4 cut(s) 473, 775, 814, 1211
SmoI CTYRAG 4 cut(s) 473, 775, 814, 1211
Sse9I AATT 6 cut(s) 676, 741, 879, 898, 1088, 1455
SseBI AGGCCT 1 cut(s) 544
SspMI CTAG 5 cut(s) 945, 1131, 1224, 1410, 1419
StuI AGGCCT 1 cut(s) 544
StyD4I CCNGG 4 cut(s) 1192, 1193, 1395, 1402
StyI CCWWGG 2 cut(s) 449, 797
TaaI ACNGT 5 cut(s) 128, 254, 263, 1040, 1492
TaiI ACGT 1 cut(s) 1436
TaqI TCGA 4 cut(s) 1092, 1141, 1440, 1503
TasI AATT 6 cut(s) 676, 741, 879, 898, 1088, 1455
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 6 cut(s) 73, 154, 283, 586, 890, 1340
Tru1I TTAA 3 cut(s) 11, 329, 903
Tru9I TTAA 3 cut(s) 11, 329, 903
TscAI CASTG 4 cut(s) 164, 259, 1045, 1190
TseFI GTSAC 3 cut(s) 1015, 1027, 1496
TseI GCWGC 7 cut(s) 49, 206, 500, 579, 948, 997, 1169
Tsp45I GTSAC 3 cut(s) 1015, 1027, 1496
TspDTI ATGAA 3 cut(s) 7, 599, 1127
TspGWI ACGGA 1 cut(s) 1140
TspMI CCCGGG 1 cut(s) 1193
TspRI CASTG 4 cut(s) 164, 259, 1045, 1190
Van91I CCANNNNNTGG 1 cut(s) 450
VpaK11BI GGWCC 2 cut(s) 533, 941
XagI CCTNNNNNAGG 1 cut(s) 189
XapI RAATTY 3 cut(s) 898, 1088, 1455
XcmI CCANNNNNNNNNTGG 2 cut(s) 456, 1287
XmaI CCCGGG 1 cut(s) 1193
XmiI GTMKAC 2 cut(s) 355, 381
XspI CTAG 5 cut(s) 945, 1131, 1224, 1410, 1419
ZraI GACGTC 1 cut(s) 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.