Prupe.4G067900_v2.0.a1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012797
Physical Location & Seq
Reverse (-)
3299387 .. 3302172
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G067900.2

Sequence Viewer

Length: 1527 bp
ATGGCTAAACAGAGCAAAATCTCATGTTGTTTTCTTGTTTTTGTTCTGGTGAATCTCATTTTCTGGAATGTGGTTTTGTCTGTGAGGGCTGAGAATGAATTTATATCAGCCGTCGGTGATTCGGGGATGAGAAGGGACAATCTACGGGTGGCGATAGAGTCATGGAATCAGTGCAATGAGGTTGGAGAAGAAGCTCTTCAGATTGGCAGCCCAAGGGCTGCTGATTGCTTTGACATATACAAAGCTACTCCGCAGCCACAAGGAGAAGTTTGCTTCTGCAATCAGCAGCTGCCCTATGTATTAGTCCACAGAGTCACAGAGCAAGACAACAAGTTAAGGATGGGAGAACCTTTCTTTGGCCTGCAGGCAGAGTCTCAGTTTAACGTAGACCTTTATGCGGCAGAGAAGGAACTGTACCTGGGATTTAAATGCCAAGTTGAAGACACCCCAAATCCGTGGCAATTCTGGATGATCATGCTCAAGAGTGGCAACATGGACACTTATGCTGCCAAATGCCCCAAAAATGGTCACCGAGTCGGACCCTTTCCTGATCAAAATACCTTTCCTTGTTTTGGAAAAGGGTGCATGAACCAGCCATCTATTTACCATGACTATACCAAGTTGCAATTGCCTGATATGACTCTAAAGGGACGGTTTTTCGGGTCATGGGATTTGGATGCAGATTTGAGCAGAGGAATGGTTGGGAATATTTCTTACCATTCTGTTACTTGGGAAAAGAAACTTGGAGAGGGAAGCTGGGTTTTCCACCATGTCTTGAGGACTTCAGCAAAGTATCCTTGGCTGATGCTTTACTTGAGATCAGACGCCACACATGGGTTTTCTGGTGGCTACCATTACCCTACAAGAGGGATGTCCAAAATTATTCCAGAATCACCCAATTTTAAAGTGAGGTTCACCTTGAATGTGATCAAAGGTGGGGGTCCTAGCAGCCAGTTCTACCTCATGGACATGGGGAGCTGTTGGAAGAACAATGGGAAGCCTTGTGATGGCAATGTGACTTCAGATGTTACCAGATACAGTGAAATGATCATAAATCCAAACACAACCTCATGGTGCCATGCAAACAACCTCAATGTGTGCCCACCTTACCACACATTCCCAAACGGCACACGGGTTCATCGAAATGACACTGCCCGCTTCCCTTACGCCGCCTATCACTTGTACTGCTCGCCGGGGAACGGGGAGCATCTAGAGGCTCCTTTTAACTTGTGTGATCCATATAGCAACCCTCAGCCTCAGGAGATTTTGCAAATCTTGCCACACCCGGTTTGGGGTGAGTACGGATACCCTACAAAGCAAGGGGAGGGTTGGATTGGGGATCCAAGAACATGGGAGCTGGATGTTGGGAGGTTGTCACAATCACTTTATTTTTACCAGGATCCAGGAACCCCACCAGCTAGAAGGCAATGGATGTCTATAGATTTAGGGGTTGAAATTTTCAAAGACCCTGATCAAGTTGCTGAATGGACTCTTAGTGATTTTGACATCCTTGTGCCTAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

509

Amino Acids

57.89

Weight (kDa)

5.97

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17030
fragaria_vesca FvH4_3g07190 FvH4_3g07210
malus_domestica MD00G1008000.v1.1
prunus_persica Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1
pyrus_communis pycom05g27320
rosa_chinensis RchiOBHm_Chr5g0011941
rosa_laevigata RLG00000031871
rosa_multiflora Rmu_sc0001475.1_g000003
rosa_roxburghii Rroxscaffold_1G00064650
rosa_rugosa Rorug04G0460100
rosa_samantha Rh5AG091700 Rh5BG087500 Rh5CG101400 Rh5DG088100
rosa_wichuraiana Rw5G008000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1074
AccI GTMKAC 1 cut(s) 387
AciI CCGC 4 cut(s) 251, 398, 1156, 1170
AclWI GGATC 5 cut(s) 1229, 1334, 1347, 1394, 1407
AcsI RAATTY 2 cut(s) 98, 1455
AcuI CTGAAG 3 cut(s) 182, 768, 1005
AcyI GRCGYC 1 cut(s) 825
AfaI GTAC 3 cut(s) 416, 1184, 1301
AgsI TTSAA 4 cut(s) 440, 922, 1454, 1462
AjnI CCWGG 3 cut(s) 417, 1395, 1402
AjuI GAANNNNNNNTTGG 4 cut(s) 339, 371, 726, 758
AluBI AGCT 7 cut(s) 194, 245, 289, 756, 978, 1357, 1418
AluI AGCT 7 cut(s) 194, 245, 289, 756, 978, 1357, 1418
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 5 cut(s) 1229, 1334, 1347, 1394, 1407
AlwNI CAGNNNCTG 1 cut(s) 289
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 7 cut(s) 207, 218, 253, 286, 289, 506, 948
ApoI RAATTY 2 cut(s) 98, 1455
Asp700I GAANNNNTTC 1 cut(s) 195
AspS9I GGNCC 2 cut(s) 539, 941
AsuC2I CCSGG 2 cut(s) 1194, 1286
AsuHPI GGTGA 6 cut(s) 61, 128, 521, 885, 907, 1307
AvaII GGWCC 2 cut(s) 539, 941
AxyI CCTNAGG 1 cut(s) 1257
BaeGI GKGCMC 1 cut(s) 1103
BamHI GGATCC 2 cut(s) 1339, 1399
BanI GGYRCC 1 cut(s) 1074
BarI GAAGNNNNNNTAC 2 cut(s) 398, 430
BbsI GAAGAC 1 cut(s) 447
BbvCI CCTCAGC 1 cut(s) 1251
BbvI GCAGC 7 cut(s) 205, 219, 265, 276, 298, 493, 960
BccI CCATC 3 cut(s) 334, 604, 1001
BceAI ACGGC 2 cut(s) 95, 1141
BciT130I CCWGG 3 cut(s) 419, 1397, 1404
BciVI GTATCC 2 cut(s) 804, 1298
BclI TGATCA 5 cut(s) 471, 550, 927, 1047, 1471
BcnI CCSGG 2 cut(s) 1194, 1286
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 3 cut(s) 945, 1211, 1419
BfmI CTRYAG 2 cut(s) 362, 1437
BfuI GTATCC 2 cut(s) 804, 1298
BisI GCNGC 9 cut(s) 208, 219, 254, 287, 290, 399, 507, 949, 1170
BlsI GCNGC 9 cut(s) 209, 220, 255, 288, 291, 400, 508, 950, 1171
Bme1390I CCNGG 5 cut(s) 419, 1194, 1286, 1397, 1404
Bme18I GGWCC 2 cut(s) 539, 941
BmgT120I GGNCC 2 cut(s) 539, 941
BmiI GGNNCC 7 cut(s) 541, 942, 1076, 1218, 1341, 1401, 1408
BmrFI CCNGG 5 cut(s) 419, 1194, 1286, 1397, 1404
BmsI GCATC 3 cut(s) 667, 795, 1216
BpiI GAAGAC 1 cut(s) 447
Bpu10I CCTNAGC 2 cut(s) 1251, 1518
BpuEI CTTGAG 3 cut(s) 464, 796, 835
BpuMI CCSGG 2 cut(s) 1194, 1286
BsaHI GRCGYC 1 cut(s) 825
BsaJI CCNNGG 5 cut(s) 212, 418, 455, 797, 1193
Bse1I ACTGG 1 cut(s) 952
Bse21I CCTNAGG 1 cut(s) 1257
Bse3DI GCAATG 3 cut(s) 181, 1018, 1433
BseBI CCWGG 3 cut(s) 419, 1397, 1404
BseDI CCNNGG 5 cut(s) 212, 418, 455, 797, 1193
BseGI GGATG 8 cut(s) 132, 345, 474, 682, 876, 1366, 1437, 1506
BseMI GCAATG 3 cut(s) 181, 1018, 1433
BseMII CTCAG 4 cut(s) 81, 389, 1265, 1271
BseNI ACTGG 1 cut(s) 952
BseSI GKGCMC 1 cut(s) 1103
BseXI GCAGC 7 cut(s) 205, 219, 265, 276, 298, 493, 960
BseYI CCCAGC 1 cut(s) 756
BshFI GGCC 1 cut(s) 360
BshNI GGYRCC 1 cut(s) 1074
BsiSI CCGG 2 cut(s) 1193, 1286
BslFI GGGAC 2 cut(s) 149, 663
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 2 cut(s) 149, 663
BsnI GGCC 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 1103
Bsp143I GATC 9 cut(s) 471, 550, 818, 927, 1047, 1234, 1339, 1399, 1471
BspACI CCGC 4 cut(s) 251, 398, 1156, 1170
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 4 cut(s) 82, 388, 1264, 1270
BspLI GGNNCC 7 cut(s) 541, 942, 1076, 1218, 1341, 1401, 1408
BspMAI CTGCAG 1 cut(s) 366
BspPI GGATC 5 cut(s) 1229, 1334, 1347, 1394, 1407
BspQI GCTCTTC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 1074
BsrDI GCAATG 3 cut(s) 181, 1018, 1433
BsrI ACTGG 1 cut(s) 952
BssECI CCNNGG 5 cut(s) 212, 418, 455, 797, 1193
BssMI GATC 9 cut(s) 471, 550, 818, 927, 1047, 1234, 1339, 1399, 1471
BssNI GRCGYC 1 cut(s) 825
BssT1I CCWWGG 2 cut(s) 212, 797
Bst2UI CCWGG 3 cut(s) 419, 1397, 1404
Bst4CI ACNGT 3 cut(s) 414, 654, 1040
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 825
BstAPI GCANNNNNTGC 1 cut(s) 1276
BstC8I GCNNGC 4 cut(s) 362, 366, 1156, 1190
BstDEI CTNAG 6 cut(s) 90, 375, 1251, 1257, 1493, 1518
BstDSI CCRYGG 1 cut(s) 455
BstEII GGTNACC 1 cut(s) 527
BstENI CCTNNNNNAGG 1 cut(s) 864
BstF5I GGATG 8 cut(s) 132, 345, 474, 682, 876, 1366, 1437, 1506
BstKTI GATC 9 cut(s) 474, 553, 821, 930, 1050, 1237, 1342, 1402, 1474
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 9 cut(s) 471, 550, 818, 927, 1047, 1234, 1339, 1399, 1471
BstMWI GCNNNNNNNGC 1 cut(s) 1276
BstNI CCWGG 3 cut(s) 419, 1397, 1404
BstPI GGTNACC 1 cut(s) 527
BstSCI CCNGG 5 cut(s) 417, 1192, 1284, 1395, 1402
BstSFI CTRYAG 2 cut(s) 362, 1437
BstSLI GKGCMC 1 cut(s) 1103
BstV1I GCAGC 7 cut(s) 205, 219, 265, 276, 298, 493, 960
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 1339, 1399
BstXI CCANNNNNNTGG 2 cut(s) 456, 1350
BstYI RGATCY 2 cut(s) 1339, 1399
Bsu36I CCTNAGG 1 cut(s) 1257
BsuI GTATCC 2 cut(s) 804, 1298
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 455
BtsCI GGATG 8 cut(s) 132, 345, 474, 682, 876, 1366, 1437, 1506
BtsI GCAGTG 1 cut(s) 1149
BtsIMutI CAGTG 3 cut(s) 176, 1045, 1149
Cac8I GCNNGC 4 cut(s) 362, 366, 1156, 1190
CaiI CAGNNNCTG 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 539, 941
CseI GACGC 1 cut(s) 833
Csp6I GTAC 3 cut(s) 415, 1183, 1300
CviQI GTAC 3 cut(s) 415, 1183, 1300
DdeI CTNAG 6 cut(s) 90, 375, 1251, 1257, 1493, 1518
DpnI GATC 9 cut(s) 473, 552, 820, 929, 1049, 1236, 1341, 1401, 1473
DpnII GATC 9 cut(s) 471, 550, 818, 927, 1047, 1234, 1339, 1399, 1471
DraI TTTAAA 2 cut(s) 427, 904
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 212, 797
Eco47I GGWCC 2 cut(s) 539, 941
Eco57I CTGAAG 3 cut(s) 182, 768, 1005
Eco81I CCTNAGG 1 cut(s) 1257
Eco91I GGTNACC 1 cut(s) 527
EcoNI CCTNNNNNAGG 1 cut(s) 864
EcoO109I RGGNCCY 1 cut(s) 941
EcoO65I GGTNACC 1 cut(s) 527
EcoRII CCWGG 3 cut(s) 417, 1395, 1402
EcoT14I CCWWGG 2 cut(s) 212, 797
ErhI CCWWGG 2 cut(s) 212, 797
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FaqI GGGAC 2 cut(s) 149, 663
FauI CCCGC 1 cut(s) 1163
FbaI TGATCA 5 cut(s) 471, 550, 927, 1047, 1471
FblI GTMKAC 1 cut(s) 387
Fnu4HI GCNGC 9 cut(s) 208, 219, 254, 287, 290, 399, 507, 949, 1170
FokI GGATG 8 cut(s) 139, 352, 481, 689, 883, 1373, 1444, 1493
Fsp4HI GCNGC 9 cut(s) 208, 219, 254, 287, 290, 399, 507, 949, 1170
FspBI CTAG 3 cut(s) 945, 1211, 1419
GluI GCNGC 9 cut(s) 208, 219, 254, 287, 290, 399, 507, 949, 1170
GsaI CCCAGC 1 cut(s) 760
HaeIII GGCC 1 cut(s) 360
HapII CCGG 2 cut(s) 1193, 1286
HgaI GACGC 1 cut(s) 833
Hin1I GRCGYC 1 cut(s) 825
HpaII CCGG 2 cut(s) 1193, 1286
HphI GGTGA 6 cut(s) 61, 128, 521, 885, 907, 1307
Hpy166II GTNNAC 3 cut(s) 307, 388, 915
Hpy188I TCNGA 4 cut(s) 201, 539, 823, 1024
Hpy188III TCNNGA 8 cut(s) 64, 466, 481, 548, 775, 887, 1211, 1259
Hpy8I GTNNAC 3 cut(s) 307, 388, 915
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 3 cut(s) 126, 400, 1416
HpyCH4III ACNGT 3 cut(s) 414, 654, 1040
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 8 cut(s) 174, 279, 364, 585, 625, 680, 1082, 1270
HpyF10VI GCNNNNNNNGC 1 cut(s) 1276
HpyF3I CTNAG 6 cut(s) 90, 375, 1251, 1257, 1493, 1518
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 1 cut(s) 825
Ksp22I TGATCA 5 cut(s) 471, 550, 927, 1047, 1471
Kzo9I GATC 9 cut(s) 471, 550, 818, 927, 1047, 1234, 1339, 1399, 1471
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 4 cut(s) 975, 1204, 1222, 1354
Lsp1109I GCAGC 7 cut(s) 205, 219, 265, 276, 298, 493, 960
LweI GCATC 3 cut(s) 667, 795, 1216
MaeI CTAG 3 cut(s) 945, 1211, 1419
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 6 cut(s) 313, 527, 724, 1015, 1027, 1374
MalI GATC 9 cut(s) 473, 552, 820, 929, 1049, 1236, 1341, 1401, 1473
MboI GATC 9 cut(s) 471, 550, 818, 927, 1047, 1234, 1339, 1399, 1471
MboII GAAGA 4 cut(s) 188, 200, 452, 997
MfeI CAATTG 1 cut(s) 626
MflI RGATCY 2 cut(s) 1339, 1399
MhlI GDGCHC 1 cut(s) 1103
MluCI AATT 6 cut(s) 98, 461, 626, 879, 898, 1455
MlyI GAGTC 6 cut(s) 167, 321, 380, 543, 634, 1483
MmeI TCCRAC 4 cut(s) 163, 517, 962, 1310
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 5 cut(s) 335, 381, 426, 903, 1224
MslI CAYNNNNRTG 3 cut(s) 968, 1143, 1511
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 2 cut(s) 1193, 1286
MspR9I CCNGG 5 cut(s) 419, 1194, 1286, 1397, 1404
MunI CAATTG 1 cut(s) 626
MvaI CCWGG 3 cut(s) 419, 1397, 1404
MwoI GCNNNNNNNGC 1 cut(s) 1276
NciI CCSGG 2 cut(s) 1194, 1286
NdeII GATC 9 cut(s) 471, 550, 818, 927, 1047, 1234, 1339, 1399, 1471
NlaIV GGNNCC 7 cut(s) 541, 942, 1076, 1218, 1341, 1401, 1408
NmuCI GTSAC 4 cut(s) 313, 527, 1015, 1374
PciSI GCTCTTC 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 1138
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 4 cut(s) 52, 119, 166, 890
PfoI TCCNGGA 1 cut(s) 1402
PkrI GCNGC 9 cut(s) 209, 220, 255, 288, 291, 400, 508, 950, 1171
PleI GAGTC 6 cut(s) 166, 320, 379, 542, 634, 1483
PpsI GAGTC 6 cut(s) 166, 320, 379, 542, 634, 1483
PpuMI RGGWCCY 1 cut(s) 941
Psp5II RGGWCCY 1 cut(s) 941
Psp6I CCWGG 3 cut(s) 417, 1395, 1402
PspEI GGTNACC 1 cut(s) 527
PspFI CCCAGC 1 cut(s) 756
PspGI CCWGG 3 cut(s) 417, 1395, 1402
PspN4I GGNNCC 7 cut(s) 541, 942, 1076, 1218, 1341, 1401, 1408
PspPI GGNCC 2 cut(s) 539, 941
PspPPI RGGWCCY 1 cut(s) 941
PstI CTGCAG 1 cut(s) 366
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 1339, 1399
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 3 cut(s) 416, 1184, 1301
RsaNI GTAC 3 cut(s) 415, 1183, 1300
RseI CAYNNNNRTG 3 cut(s) 968, 1143, 1511
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 5 cut(s) 335, 381, 426, 903, 1224
SatI GCNGC 9 cut(s) 208, 219, 254, 287, 290, 399, 507, 949, 1170
Sau3AI GATC 9 cut(s) 471, 550, 818, 927, 1047, 1234, 1339, 1399, 1471
Sau96I GGNCC 2 cut(s) 539, 941
SbfI CCTGCAGG 1 cut(s) 366
SchI GAGTC 6 cut(s) 167, 321, 380, 543, 634, 1483
ScrFI CCNGG 5 cut(s) 419, 1194, 1286, 1397, 1404
SdaI CCTGCAGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 1103
SfaNI GCATC 3 cut(s) 667, 795, 1216
SfcI CTRYAG 2 cut(s) 362, 1437
SinI GGWCC 2 cut(s) 539, 941
SmiI ATTTAAAT 1 cut(s) 427
SmiMI CAYNNNNRTG 3 cut(s) 968, 1143, 1511
SmlI CTYRAG 3 cut(s) 479, 775, 814
SmoI CTYRAG 3 cut(s) 479, 775, 814
Sse8387I CCTGCAGG 1 cut(s) 366
Sse9I AATT 6 cut(s) 98, 461, 626, 879, 898, 1455
SsiI CCGC 4 cut(s) 251, 398, 1156, 1170
SspI AATATT 1 cut(s) 709
SspMI CTAG 3 cut(s) 945, 1211, 1419
StyD4I CCNGG 5 cut(s) 417, 1192, 1284, 1395, 1402
StyI CCWWGG 2 cut(s) 212, 797
SwaI ATTTAAAT 1 cut(s) 427
TaaI ACNGT 3 cut(s) 414, 654, 1040
TaiI ACGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 1141
TasI AATT 6 cut(s) 98, 461, 626, 879, 898, 1455
TatI WGTACW 1 cut(s) 1182
TauI GCSGC 2 cut(s) 401, 1172
TfiI GAWTC 4 cut(s) 52, 119, 166, 890
Tru1I TTAA 5 cut(s) 335, 381, 426, 903, 1224
Tru9I TTAA 5 cut(s) 335, 381, 426, 903, 1224
TscAI CASTG 3 cut(s) 176, 1045, 1156
TseFI GTSAC 4 cut(s) 313, 527, 1015, 1374
TseI GCWGC 7 cut(s) 207, 218, 253, 286, 289, 506, 948
Tsp45I GTSAC 4 cut(s) 313, 527, 1015, 1374
TspDTI ATGAA 3 cut(s) 111, 602, 1127
TspGWI ACGGA 2 cut(s) 444, 1317
TspRI CASTG 3 cut(s) 176, 1045, 1156
VpaK11BI GGWCC 2 cut(s) 539, 941
XagI CCTNNNNNAGG 1 cut(s) 864
XapI RAATTY 2 cut(s) 98, 1455
XbaI TCTAGA 1 cut(s) 1210
XcmI CCANNNNNNNNNTGG 1 cut(s) 1287
XmiI GTMKAC 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 3 cut(s) 945, 1211, 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.