Rh5AG091700

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012797
Physical Location & Seq
Reverse (-)
8304776 .. 8307453
2678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG091700.1

Sequence Viewer

Length: 1401 bp
ATGGCCAAACAAACCCCATGTTCTTTTCTTCTTGTTCTTGTTCTAGGGGAGCTTTTCTTTGAAGGGGTTGTGAATGTCCAGAGTGAGTATATATCTGCAGTTGGTGATCCAGAAATGAGAAGAGACAGTCTTCGGGTTGCGATAGAGTCATGGAATCAATGCAATGAGGTTGGAGAAGAAAATCTTCAGACAGGTAGCCCAAGAGCTGCTGATTGCTTCGACATATACAGAGTTTATTCTCCACAGACAAACAGTGACAGTTGCTCTATCTGCAATGAGATGCCCTATGTATTAGTCCACAGAGTTACAGATGCAGACAACAAGTTAACGACAGGAGAGCCTTTTCTTGGTCTGCAACCGAAGTCTCAGTTTGATGTAGACCTTTACGCGGCGGATAAGGAACTCTATTTGGGATCTAAATGTGAGGCTGATGACACACCAAATCCATGGCAGTTTTGGATGATCATGCTCAAGAATGGCAACATGGACACTACCGCTGCCAAATGCCCGAAAAATGGTCAGAAAGTTGGACCATTTAGGCCCGACTACAACGCCTTTCCTTGTTTCGGAGATGGCTGCATGAAGCAGCCATATATTTACCATGACTATACCAAGTTGCGATGGCCTGACACAACTACTCTAAAGGGAAGGTTTTTCGGGTCGTGGGACTCAAACTGGGATGTGAGTAGAGGAACGACGGGGAACACTTCTTACTATTCTGTTACTTGGGAAAAGAAAATTGGAGAAGGAAGTTGGGTTTTCCACCATGTCTTGAGGACTTCAACAAAGTATCCATGGTTGATGCTGTACTTGAGATCAGATTCCACACATGGATTTTCTGGTGGCTACCATTACTCTACAAGAGGGATGTCCAAAATTATTCCAGAATCACCAAATTTTAAAGTGAGGTTCACCTTGAATGTGATCAAGGGAGGGGGTCCTCACAGCCAGTTCTACCTAATGGACATGGGGAGCTGTTGGAAGAACAATGGGCTGCCTTGTGATGGCAATGTGACTTCAGACGTCACCAGATACAGTGAAATGATCATAAATCCACAAACACCTGCATGGTGCAAGCCAGAAAAACTTGATGTATGTCCACCTTACCACACATTCTCTAATGGAACTAGAGTTCATCGAAATGACACATCCCGCTTCCCTTATGCGGCTTATCACCTGCACTGCTCACCCGGGAATGCAGAGCATCTTGAAGCTCCTTCTAATTTGTGTGATCCATATAGCAATCCTCAGCCTCAGGAGATAGTTCAAATCTTGCCACACCCTGTTTGGGGTGAGTATGGGTACCCTACAAAGCAAGGGGAGGGTTGGATTGGGGATTCAAGGACTTGGGAGCTTGATGTTGGGAGGTTATCACAATCACTTTACTTTTACCAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

466

Amino Acids

52.98

Weight (kDa)

5.82

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 31 - 465 1.4e-233 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17030
fragaria_vesca FvH4_3g07190 FvH4_3g07210
malus_domestica MD00G1008000.v1.1
prunus_persica Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1
pyrus_communis pycom05g27320
rosa_chinensis RchiOBHm_Chr5g0011941
rosa_laevigata RLG00000031871
rosa_multiflora Rmu_sc0001475.1_g000003
rosa_roxburghii Rroxscaffold_1G00064650
rosa_rugosa Rorug04G0460100
rosa_samantha Rh5AG091700 Rh5BG087500 Rh5CG101400 Rh5DG088100
rosa_wichuraiana Rw5G008000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1072, 1185
AatII GACGTC 1 cut(s) 1026
Acc36I ACCTGC 2 cut(s) 1072, 1185
Acc65I GGTACC 1 cut(s) 1302
AccB1I GGYRCC 1 cut(s) 1302
AccI GTMKAC 1 cut(s) 378
AccII CGCG 1 cut(s) 389
AciI CCGC 5 cut(s) 389, 392, 495, 1153, 1166
AclWI GGATC 3 cut(s) 101, 421, 1226
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 895
AcuI CTGAAG 2 cut(s) 170, 1002
AcyI GRCGYC 1 cut(s) 1023
AfaI GTAC 2 cut(s) 809, 1304
AfiI CCNNNNNNNGG 8 cut(s) 347, 388, 515, 566, 1004, 1165, 1288, 1289
AgsI TTSAA 6 cut(s) 62, 783, 919, 1211, 1268, 1341
AjnI CCWGG 1 cut(s) 1392
AjuI GAANNNNNNNTTGG 2 cut(s) 723, 755
AloI GAACNNNNNNTCC 2 cut(s) 1116, 1148
AluBI AGCT 5 cut(s) 52, 206, 975, 1214, 1354
AluI AGCT 5 cut(s) 52, 206, 975, 1214, 1354
Alw26I GTCTC 2 cut(s) 117, 369
AlwI GGATC 3 cut(s) 101, 421, 1226
Ama87I CYCGRG 1 cut(s) 1190
AoxI GGCC 3 cut(s) 3, 539, 623
ApeKI GCWGC 5 cut(s) 206, 497, 576, 586, 994
ApoI RAATTY 1 cut(s) 895
Asp700I GAANNNNTTC 1 cut(s) 183
Asp718I GGTACC 1 cut(s) 1302
AspS9I GGNCC 3 cut(s) 530, 540, 938
AsuC2I CCSGG 2 cut(s) 1191, 1192
AsuHPI GGTGA 7 cut(s) 116, 882, 904, 1018, 1166, 1179, 1304
AvaI CYCGRG 1 cut(s) 1190
AvaII GGWCC 2 cut(s) 530, 938
AxyI CCTNAGG 1 cut(s) 1254
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 1302
BbsI GAAGAC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 1248
BbvI GCAGC 5 cut(s) 193, 484, 563, 598, 981
BccI CCATC 3 cut(s) 566, 615, 998
BciT130I CCWGG 1 cut(s) 1394
BciVI GTATCC 1 cut(s) 801
BclI TGATCA 3 cut(s) 462, 924, 1044
BcnI CCSGG 2 cut(s) 1191, 1192
BcoDI GTCTC 2 cut(s) 117, 369
BfaI CTAG 2 cut(s) 44, 1128
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 2 cut(s) 1072, 1185
BfuI GTATCC 1 cut(s) 801
BisI GCNGC 7 cut(s) 207, 390, 498, 577, 587, 995, 1167
BlsI GCNGC 7 cut(s) 208, 391, 499, 578, 588, 996, 1168
Bme1390I CCNGG 3 cut(s) 1191, 1192, 1394
Bme18I GGWCC 2 cut(s) 530, 938
BmeT110I CYCGRG 1 cut(s) 1190
BmgT120I GGNCC 3 cut(s) 530, 540, 938
BmiI GGNNCC 2 cut(s) 939, 1304
BmrFI CCNGG 3 cut(s) 1191, 1192, 1394
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 4 cut(s) 270, 301, 792, 1213
BmuI ACTGGG 1 cut(s) 685
BpiI GAAGAC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 1248
BpuEI CTTGAG 3 cut(s) 455, 793, 832
BpuMI CCSGG 2 cut(s) 1191, 1192
BsaHI GRCGYC 1 cut(s) 1023
BsaJI CCNNGG 3 cut(s) 446, 794, 1190
Bsc4I CCNNNNNNNGG 8 cut(s) 347, 388, 515, 566, 1004, 1165, 1288, 1289
Bse1I ACTGG 2 cut(s) 680, 949
Bse21I CCTNAGG 1 cut(s) 1254
Bse3DI GCAATG 3 cut(s) 169, 280, 1015
BseBI CCWGG 1 cut(s) 1394
BseDI CCNNGG 3 cut(s) 446, 794, 1190
BseGI GGATG 4 cut(s) 465, 685, 873, 1148
BseLI CCNNNNNNNGG 8 cut(s) 347, 388, 515, 566, 1004, 1165, 1288, 1289
BseMI GCAATG 3 cut(s) 169, 280, 1015
BseMII CTCAG 3 cut(s) 380, 1262, 1268
BseNI ACTGG 2 cut(s) 680, 949
BseXI GCAGC 5 cut(s) 193, 484, 563, 598, 981
BsgI GTGCAG 1 cut(s) 1163
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 3 cut(s) 5, 541, 625
BshNI GGYRCC 1 cut(s) 1302
BsiHKCI CYCGRG 1 cut(s) 1190
BsiSI CCGG 1 cut(s) 1191
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 8 cut(s) 347, 388, 515, 566, 1004, 1165, 1288, 1289
BsmAI GTCTC 2 cut(s) 117, 369
BsmFI GGGAC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 1201
BsnI GGCC 3 cut(s) 5, 541, 625
BsoBI CYCGRG 1 cut(s) 1190
Bsp143I GATC 7 cut(s) 106, 413, 462, 815, 924, 1044, 1231
Bsp19I CCATGG 2 cut(s) 446, 794
BspACI CCGC 5 cut(s) 389, 392, 495, 1153, 1166
BspANI GGCC 3 cut(s) 5, 541, 625
BspCNI CTCAG 3 cut(s) 379, 1261, 1267
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 939, 1304
BspMAI CTGCAG 1 cut(s) 100
BspMI ACCTGC 2 cut(s) 1072, 1185
BspPI GGATC 3 cut(s) 101, 421, 1226
BspT107I GGYRCC 1 cut(s) 1302
BsrDI GCAATG 3 cut(s) 169, 280, 1015
BsrI ACTGG 2 cut(s) 680, 949
BssECI CCNNGG 3 cut(s) 446, 794, 1190
BssMI GATC 7 cut(s) 106, 413, 462, 815, 924, 1044, 1231
BssNI GRCGYC 1 cut(s) 1023
BssT1I CCWWGG 2 cut(s) 446, 794
Bst2UI CCWGG 1 cut(s) 1394
Bst4CI ACNGT 4 cut(s) 128, 254, 260, 1037
Bst6I CTCTTC 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 1023
BstC8I GCNNGC 1 cut(s) 1076
BstDEI CTNAG 3 cut(s) 366, 1248, 1254
BstDSI CCRYGG 2 cut(s) 446, 794
BstF5I GGATG 4 cut(s) 465, 685, 873, 1148
BstFNI CGCG 1 cut(s) 389
BstKTI GATC 7 cut(s) 109, 416, 465, 818, 927, 1047, 1234
BstMAI GTCTC 2 cut(s) 117, 369
BstMBI GATC 7 cut(s) 106, 413, 462, 815, 924, 1044, 1231
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 1394
BstSCI CCNGG 3 cut(s) 1189, 1190, 1392
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 5 cut(s) 193, 484, 563, 598, 981
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 413
BstXI CCANNNNNNTGG 1 cut(s) 447
BstYI RGATCY 1 cut(s) 413
Bsu36I CCTNAGG 1 cut(s) 1254
BsuI GTATCC 1 cut(s) 801
BsuRI GGCC 3 cut(s) 5, 541, 625
BtgI CCRYGG 2 cut(s) 446, 794
BtgZI GCGATG 1 cut(s) 634
BtsCI GGATG 4 cut(s) 465, 685, 873, 1148
BtsI GCAGTG 1 cut(s) 1180
BtsIMutI CAGTG 3 cut(s) 259, 1042, 1180
BveI ACCTGC 2 cut(s) 1072, 1185
Cac8I GCNNGC 1 cut(s) 1076
Cfr13I GGNCC 3 cut(s) 530, 540, 938
Cfr9I CCCGGG 1 cut(s) 1190
CsiI ACCWGGT 1 cut(s) 1392
Csp6I GTAC 2 cut(s) 808, 1303
CviQI GTAC 2 cut(s) 808, 1303
DdeI CTNAG 3 cut(s) 366, 1248, 1254
DpnI GATC 7 cut(s) 108, 415, 464, 817, 926, 1046, 1233
DpnII GATC 7 cut(s) 106, 413, 462, 815, 924, 1044, 1231
DraI TTTAAA 1 cut(s) 901
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
EciI GGCGGA 1 cut(s) 407
Eco130I CCWWGG 2 cut(s) 446, 794
Eco47I GGWCC 2 cut(s) 530, 938
Eco57I CTGAAG 2 cut(s) 170, 1002
Eco81I CCTNAGG 1 cut(s) 1254
Eco88I CYCGRG 1 cut(s) 1190
EcoO109I RGGNCCY 1 cut(s) 938
EcoRII CCWGG 1 cut(s) 1392
EcoT14I CCWWGG 2 cut(s) 446, 794
ErhI CCWWGG 2 cut(s) 446, 794
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 1 cut(s) 680
FauI CCCGC 1 cut(s) 1160
FbaI TGATCA 3 cut(s) 462, 924, 1044
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 7 cut(s) 207, 390, 498, 577, 587, 995, 1167
FokI GGATG 4 cut(s) 472, 692, 880, 1135
Fsp4HI GCNGC 7 cut(s) 207, 390, 498, 577, 587, 995, 1167
FspBI CTAG 2 cut(s) 44, 1128
GluI GCNGC 7 cut(s) 207, 390, 498, 577, 587, 995, 1167
HaeIII GGCC 3 cut(s) 5, 541, 625
HapII CCGG 1 cut(s) 1191
Hin1I GRCGYC 1 cut(s) 1023
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 6 cut(s) 146, 154, 668, 821, 887, 1337
HpaI GTTAAC 1 cut(s) 327
HpaII CCGG 1 cut(s) 1191
HphI GGTGA 7 cut(s) 116, 882, 904, 1018, 1166, 1179, 1304
Hpy166II GTNNAC 5 cut(s) 298, 327, 379, 912, 1100
Hpy188I TCNGA 5 cut(s) 189, 522, 569, 820, 1021
Hpy188III TCNNGA 7 cut(s) 79, 110, 472, 772, 884, 1208, 1256
Hpy8I GTNNAC 5 cut(s) 298, 327, 379, 912, 1100
Hpy99I CGWCG 1 cut(s) 700
HpyAV CCTTC 4 cut(s) 56, 642, 740, 1227
HpyCH4III ACNGT 4 cut(s) 128, 254, 260, 1037
HpyCH4IV ACGT 1 cut(s) 1023
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 3 cut(s) 366, 1248, 1254
HpySE526I ACGT 1 cut(s) 1023
Hsp92I GRCGYC 1 cut(s) 1023
KpnI GGTACC 1 cut(s) 1306
Ksp22I TGATCA 3 cut(s) 462, 924, 1044
KspAI GTTAAC 1 cut(s) 327
Kzo9I GATC 7 cut(s) 106, 413, 462, 815, 924, 1044, 1231
LmnI GCTCC 4 cut(s) 49, 972, 1219, 1351
Lsp1109I GCAGC 5 cut(s) 193, 484, 563, 598, 981
LweI GCATC 4 cut(s) 270, 301, 792, 1213
MabI ACCWGGT 1 cut(s) 1392
MaeI CTAG 2 cut(s) 44, 1128
MaeII ACGT 1 cut(s) 1023
MaeIII GTNAC 5 cut(s) 254, 304, 721, 1012, 1024
MalI GATC 7 cut(s) 108, 415, 464, 817, 926, 1046, 1233
MboI GATC 7 cut(s) 106, 413, 462, 815, 924, 1044, 1231
MboII GAAGA 6 cut(s) 20, 122, 132, 176, 188, 994
MflI RGATCY 1 cut(s) 413
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 738, 876, 895, 1222
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 155, 662
MmeI TCCRAC 4 cut(s) 151, 508, 959, 1307
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 183
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 326, 900
MslI CAYNNNNRTG 2 cut(s) 1066, 1140
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 1 cut(s) 1191
MspR9I CCNGG 3 cut(s) 1191, 1192, 1394
Mva1269I GAATGC 1 cut(s) 1201
MvaI CCWGG 1 cut(s) 1394
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 270
NciI CCSGG 2 cut(s) 1191, 1192
NcoI CCATGG 2 cut(s) 446, 794
NdeII GATC 7 cut(s) 106, 413, 462, 815, 924, 1044, 1231
NlaIV GGNNCC 2 cut(s) 939, 1304
NmuCI GTSAC 3 cut(s) 254, 1012, 1024
PaqCI CACCTGC 2 cut(s) 1072, 1185
PctI GAATGC 1 cut(s) 1201
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 4 cut(s) 154, 821, 887, 1337
PkrI GCNGC 7 cut(s) 208, 391, 499, 578, 588, 996, 1168
PleI GAGTC 2 cut(s) 154, 662
PpsI GAGTC 2 cut(s) 154, 662
PpuMI RGGWCCY 1 cut(s) 938
Psp5II RGGWCCY 1 cut(s) 938
Psp6I CCWGG 1 cut(s) 1392
PspGI CCWGG 1 cut(s) 1392
PspN4I GGNNCC 2 cut(s) 939, 1304
PspPI GGNCC 3 cut(s) 530, 540, 938
PspPPI RGGWCCY 1 cut(s) 938
PsrI GAACNNNNNNTAC 2 cut(s) 695, 727
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 413
RsaI GTAC 2 cut(s) 809, 1304
RsaNI GTAC 2 cut(s) 808, 1303
RseI CAYNNNNRTG 2 cut(s) 1066, 1140
SaqAI TTAA 2 cut(s) 326, 900
SatI GCNGC 7 cut(s) 207, 390, 498, 577, 587, 995, 1167
Sau3AI GATC 7 cut(s) 106, 413, 462, 815, 924, 1044, 1231
Sau96I GGNCC 3 cut(s) 530, 540, 938
SchI GAGTC 2 cut(s) 155, 662
ScrFI CCNGG 3 cut(s) 1191, 1192, 1394
SexAI ACCWGGT 1 cut(s) 1392
SfaNI GCATC 4 cut(s) 270, 301, 792, 1213
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 2 cut(s) 530, 938
SmaI CCCGGG 1 cut(s) 1192
SmiMI CAYNNNNRTG 2 cut(s) 1066, 1140
SmlI CTYRAG 3 cut(s) 470, 772, 811
SmoI CTYRAG 3 cut(s) 470, 772, 811
Sse9I AATT 4 cut(s) 738, 876, 895, 1222
SsiI CCGC 5 cut(s) 389, 392, 495, 1153, 1166
SspMI CTAG 2 cut(s) 44, 1128
StyD4I CCNGG 3 cut(s) 1189, 1190, 1392
StyI CCWWGG 2 cut(s) 446, 794
TaaI ACNGT 4 cut(s) 128, 254, 260, 1037
TaiI ACGT 1 cut(s) 1026
TaqI TCGA 2 cut(s) 219, 1138
TasI AATT 4 cut(s) 738, 876, 895, 1222
TatI WGTACW 1 cut(s) 807
TauI GCSGC 2 cut(s) 392, 1169
TfiI GAWTC 4 cut(s) 154, 821, 887, 1337
Tru1I TTAA 2 cut(s) 326, 900
Tru9I TTAA 2 cut(s) 326, 900
TscAI CASTG 3 cut(s) 259, 1042, 1187
TseFI GTSAC 3 cut(s) 254, 1012, 1024
TseI GCWGC 5 cut(s) 206, 497, 576, 586, 994
Tsp45I GTSAC 3 cut(s) 254, 1012, 1024
TspDTI ATGAA 2 cut(s) 596, 1124
TspMI CCCGGG 1 cut(s) 1190
TspRI CASTG 3 cut(s) 259, 1042, 1187
VpaK11BI GGWCC 2 cut(s) 530, 938
XapI RAATTY 1 cut(s) 895
XcmI CCANNNNNNNNNTGG 2 cut(s) 453, 1284
XmaI CCCGGG 1 cut(s) 1190
XmiI GTMKAC 1 cut(s) 378
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 2 cut(s) 44, 1128
ZraI GACGTC 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.