Rroxscaffold_1G00064650

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012797
Physical Location & Seq
Forward (+)
86465378 .. 86467772
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064650.1

Sequence Viewer

Length: 1464 bp
ATGGCCAAACAAACCCCATGTTCTTTTCTTCTTGTTCTTGTTCTTGTTCTAGCGGAGCTTTTCTTTGAAGGGGTTGTGAATGTCCAGAGTGAGTATATATCTGCAGTTGGTGATCCAGAAATGAGAAGAGACAGTCTTCGGGTTGCGATAGAGTCATGGAATCAATGCAATGAGGTTGGAGAAGAAAATATTCAGACAGGTGACAGTTGCTCTATCTGCAATGAGATGCCCTATGTATTAGTCCACAGAGTCACAGATGCAGACAACAAGTTAAGGACAGGAGAGCCTTTTCTTGGTCTGCAACCGAAGTCTCAGTTTGATGTAGACCTTTACGCGGCGGATAAGGAACTCTATTTGGGATCTAAATGTGAAGTTGATGACACCCCAAATCCATGGCAGTTTTGGATGATCATGCTCAAGAATGGCAACATGGACACTACCGCTGCCATATGCCCGAAAAATGGCCACAAAGTTGGACCATTTAGGCCTGACAACAACGCCTTTCCTTGTTTCGGAGATGGCTGCATGAAGCAGCCATATATTTACCATGACTATACCAAGTTGCAATGGCCTGATACAACTACTCTAAAGGGGAGGTTTTTCGGGTCGTGGGACTCTAACTGGGATGTGAGTAGAGGAATGATGGGGAACACTTCTTACTATTCTGTTACTTGGGAAAAGAAAATTGGAGAAGGAAGTTGGGTTTTCCACCATGTCTTGAGGACTTCAACAAAGTATCCATGGTTGATGCTTTACTTGAGATCAGATTCCACAAATGGATTTTCTGGTGGCTACCATTACTCTACAAGAGGGATGTCCAAAATTGAGTTTGAAAACAAGGTATCTATAATTCACCTTGAATGTGATCAAAGGAGGGGTCCTCACAGCCAGTTCTACCTAATGGACATGGGGAGCTGTTGGAAGAACAATGGGCTGCCCTGTGATGGCAATGTGACTTCAGACGTCACCAGATACAGTGAAATGATCATAAATCCACAAACACCTGCATGGTGCAAGCCAGAAAAACTTGATGTATGTCCACCTTACCACACATTCTCTAATGGAACTAGAGTTCATCGAAATGACACATCCCGCTTCCCTTATGCGGCTTATCACCTGCACTGCTCACCAGGGAATGCAGAGCATCTTGAAGCTCCTTCTAGTTTGTGTGATCCATATAGCAATCCTCAGCCTCAGGAGATAGTTCAAATCTTGCCACACCCTGTTTGGGGTGAGTATGGGTACCCTACCAAGCAAGGGGAGGGTTGGATTGGGGATTCAAGGACTTGGGAGCTTGATGTTGGGAGGTTATCACAATCACTTTACTTTTACCAGGATCCAGGAACTAGACCAGCTAGAAGGCAATGGATGTCTATAGATTTGGGGACTGAAATTTTCAAAGATCCTGATCAATTGGCTGAGTGGACTGTTAGTGACTTCAACATACTTGTGCCTGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

487

Amino Acids

55.7

Weight (kDa)

5.28

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 33 - 484 3.5e-232 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17030
fragaria_vesca FvH4_3g07190 FvH4_3g07210
malus_domestica MD00G1008000.v1.1
prunus_persica Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1
pyrus_communis pycom05g27320
rosa_chinensis RchiOBHm_Chr5g0011941
rosa_laevigata RLG00000031871
rosa_multiflora Rmu_sc0001475.1_g000003
rosa_roxburghii Rroxscaffold_1G00064650
rosa_rugosa Rorug04G0460100
rosa_samantha Rh5AG091700 Rh5BG087500 Rh5CG101400 Rh5DG088100
rosa_wichuraiana Rw5G008000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1012, 1125
AatII GACGTC 1 cut(s) 966
Acc36I ACCTGC 2 cut(s) 1012, 1125
Acc65I GGTACC 1 cut(s) 1242
AccB1I GGYRCC 1 cut(s) 1242
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 335
AciI CCGC 6 cut(s) 53, 335, 338, 441, 1093, 1106
AclWI GGATC 6 cut(s) 107, 367, 1166, 1331, 1344, 1397
AcoI YGGCCR 2 cut(s) 3, 463
AcsI RAATTY 1 cut(s) 1392
AcuI CTGAAG 1 cut(s) 942
AcyI GRCGYC 1 cut(s) 963
AfaI GTAC 1 cut(s) 1244
AfiI CCNNNNNNNGG 9 cut(s) 293, 334, 461, 512, 944, 1105, 1228, 1229, 1257
AgsI TTSAA 9 cut(s) 68, 729, 833, 860, 1151, 1208, 1281, 1399, 1441
AjnI CCWGG 3 cut(s) 1129, 1332, 1339
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
AloI GAACNNNNNNTCC 2 cut(s) 1056, 1088
AluBI AGCT 5 cut(s) 58, 915, 1154, 1294, 1355
AluI AGCT 5 cut(s) 58, 915, 1154, 1294, 1355
Alw26I GTCTC 2 cut(s) 123, 315
AlwI GGATC 6 cut(s) 107, 367, 1166, 1331, 1344, 1397
AoxI GGCC 4 cut(s) 3, 463, 485, 569
ApeKI GCWGC 4 cut(s) 443, 522, 532, 934
ApoI RAATTY 1 cut(s) 1392
ArsI GACNNNNNNTTYG 2 cut(s) 862, 894
Asp700I GAANNNNTTC 1 cut(s) 189
Asp718I GGTACC 1 cut(s) 1242
AspS9I GGNCC 2 cut(s) 476, 878
AsuHPI GGTGA 7 cut(s) 122, 212, 845, 958, 1106, 1119, 1244
AvaII GGWCC 2 cut(s) 476, 878
AxyI CCTNAGG 1 cut(s) 1194
BalI TGGCCA 2 cut(s) 5, 465
BamHI GGATCC 1 cut(s) 1336
BanI GGYRCC 1 cut(s) 1242
BbsI GAAGAC 1 cut(s) 128
BbvCI CCTCAGC 1 cut(s) 1188
BbvI GCAGC 4 cut(s) 430, 509, 544, 921
BccI CCATC 3 cut(s) 512, 637, 938
BciT130I CCWGG 3 cut(s) 1131, 1334, 1341
BciVI GTATCC 1 cut(s) 747
BclI TGATCA 4 cut(s) 408, 865, 984, 1408
BcoDI GTCTC 2 cut(s) 123, 315
BfaI CTAG 5 cut(s) 50, 1068, 1161, 1347, 1356
BfmI CTRYAG 2 cut(s) 102, 1374
BfuAI ACCTGC 2 cut(s) 1012, 1125
BfuI GTATCC 1 cut(s) 747
BisI GCNGC 6 cut(s) 336, 444, 523, 533, 935, 1107
BlsI GCNGC 6 cut(s) 337, 445, 524, 534, 936, 1108
Bme1390I CCNGG 3 cut(s) 1131, 1334, 1341
Bme18I GGWCC 2 cut(s) 476, 878
BmgT120I GGNCC 2 cut(s) 476, 878
BmiI GGNNCC 3 cut(s) 879, 1244, 1338
BmrFI CCNGG 3 cut(s) 1131, 1334, 1341
BmrI ACTGGG 1 cut(s) 631
BmsI GCATC 4 cut(s) 216, 247, 738, 1153
BmuI ACTGGG 1 cut(s) 631
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 865, 897
Bpu10I CCTNAGC 2 cut(s) 1188, 1455
BpuEI CTTGAG 3 cut(s) 401, 739, 778
BsaBI GATNNNNATC 1 cut(s) 1407
BsaHI GRCGYC 1 cut(s) 963
BsaJI CCNNGG 3 cut(s) 392, 740, 1130
Bsc4I CCNNNNNNNGG 9 cut(s) 293, 334, 461, 512, 944, 1105, 1228, 1229, 1257
Bse1I ACTGG 2 cut(s) 626, 889
Bse21I CCTNAGG 1 cut(s) 1194
Bse3DI GCAATG 5 cut(s) 175, 226, 572, 955, 1370
Bse8I GATNNNNATC 1 cut(s) 1407
BseBI CCWGG 3 cut(s) 1131, 1334, 1341
BseDI CCNNGG 3 cut(s) 392, 740, 1130
BseGI GGATG 5 cut(s) 411, 631, 819, 1088, 1374
BseJI GATNNNNATC 1 cut(s) 1407
BseLI CCNNNNNNNGG 9 cut(s) 293, 334, 461, 512, 944, 1105, 1228, 1229, 1257
BseMI GCAATG 5 cut(s) 175, 226, 572, 955, 1370
BseMII CTCAG 5 cut(s) 326, 1202, 1208, 1410, 1446
BseNI ACTGG 2 cut(s) 626, 889
BseXI GCAGC 4 cut(s) 430, 509, 544, 921
BsgI GTGCAG 1 cut(s) 1103
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 4 cut(s) 5, 465, 487, 571
BshNI GGYRCC 1 cut(s) 1242
BslFI GGGAC 2 cut(s) 626, 1399
BslI CCNNNNNNNGG 9 cut(s) 293, 334, 461, 512, 944, 1105, 1228, 1229, 1257
BsmAI GTCTC 2 cut(s) 123, 315
BsmFI GGGAC 2 cut(s) 626, 1399
BsmI GAATGC 1 cut(s) 1141
BsnI GGCC 4 cut(s) 5, 465, 487, 571
Bsp19I CCATGG 2 cut(s) 392, 740
BspACI CCGC 6 cut(s) 53, 335, 338, 441, 1093, 1106
BspANI GGCC 4 cut(s) 5, 465, 487, 571
BspCNI CTCAG 5 cut(s) 325, 1201, 1207, 1411, 1447
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 3 cut(s) 879, 1244, 1338
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 2 cut(s) 1012, 1125
BspPI GGATC 6 cut(s) 107, 367, 1166, 1331, 1344, 1397
BspT107I GGYRCC 1 cut(s) 1242
BsrDI GCAATG 5 cut(s) 175, 226, 572, 955, 1370
BsrI ACTGG 2 cut(s) 626, 889
BssECI CCNNGG 3 cut(s) 392, 740, 1130
BssNI GRCGYC 1 cut(s) 963
BssT1I CCWWGG 2 cut(s) 392, 740
Bst2UI CCWGG 3 cut(s) 1131, 1334, 1341
Bst4CI ACNGT 4 cut(s) 134, 206, 977, 1429
Bst6I CTCTTC 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 963
BstC8I GCNNGC 1 cut(s) 1016
BstDEI CTNAG 5 cut(s) 312, 1188, 1194, 1419, 1455
BstDSI CCRYGG 2 cut(s) 392, 740
BstF5I GGATG 5 cut(s) 411, 631, 819, 1088, 1374
BstFNI CGCG 1 cut(s) 335
BstMAI GTCTC 2 cut(s) 123, 315
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 3 cut(s) 1131, 1334, 1341
BstSCI CCNGG 3 cut(s) 1129, 1332, 1339
BstSFI CTRYAG 2 cut(s) 102, 1374
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 4 cut(s) 430, 509, 544, 921
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 3 cut(s) 359, 1336, 1402
BstXI CCANNNNNNTGG 2 cut(s) 393, 473
BstYI RGATCY 3 cut(s) 359, 1336, 1402
Bsu36I CCTNAGG 1 cut(s) 1194
BsuI GTATCC 1 cut(s) 747
BsuRI GGCC 4 cut(s) 5, 465, 487, 571
BtgI CCRYGG 2 cut(s) 392, 740
BtsCI GGATG 5 cut(s) 411, 631, 819, 1088, 1374
BtsI GCAGTG 1 cut(s) 1120
BtsIMutI CAGTG 2 cut(s) 982, 1120
BveI ACCTGC 2 cut(s) 1012, 1125
Cac8I GCNNGC 1 cut(s) 1016
Cfr13I GGNCC 2 cut(s) 476, 878
Csp6I GTAC 1 cut(s) 1243
CviQI GTAC 1 cut(s) 1243
DdeI CTNAG 5 cut(s) 312, 1188, 1194, 1419, 1455
EaeI YGGCCR 2 cut(s) 3, 463
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
EciI GGCGGA 1 cut(s) 353
Eco130I CCWWGG 2 cut(s) 392, 740
Eco147I AGGCCT 1 cut(s) 487
Eco47I GGWCC 2 cut(s) 476, 878
Eco57I CTGAAG 1 cut(s) 942
Eco81I CCTNAGG 1 cut(s) 1194
EcoO109I RGGNCCY 1 cut(s) 878
EcoRII CCWGG 3 cut(s) 1129, 1332, 1339
EcoT14I CCWWGG 2 cut(s) 392, 740
ErhI CCWWGG 2 cut(s) 392, 740
FaqI GGGAC 2 cut(s) 626, 1399
FauI CCCGC 1 cut(s) 1100
FauNDI CATATG 1 cut(s) 449
FbaI TGATCA 4 cut(s) 408, 865, 984, 1408
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 6 cut(s) 336, 444, 523, 533, 935, 1107
FokI GGATG 5 cut(s) 418, 638, 826, 1075, 1381
Fsp4HI GCNGC 6 cut(s) 336, 444, 523, 533, 935, 1107
FspBI CTAG 5 cut(s) 50, 1068, 1161, 1347, 1356
GluI GCNGC 6 cut(s) 336, 444, 523, 533, 935, 1107
HaeIII GGCC 4 cut(s) 5, 465, 487, 571
Hin1I GRCGYC 1 cut(s) 963
HinfI GANTC 6 cut(s) 152, 160, 249, 614, 767, 1277
HphI GGTGA 7 cut(s) 122, 212, 845, 958, 1106, 1119, 1244
Hpy166II GTNNAC 4 cut(s) 244, 325, 1040, 1425
Hpy188I TCNGA 4 cut(s) 195, 515, 766, 961
Hpy188III TCNNGA 7 cut(s) 85, 116, 418, 718, 1148, 1196, 1406
Hpy8I GTNNAC 4 cut(s) 244, 325, 1040, 1425
HpyAV CCTTC 4 cut(s) 62, 686, 1167, 1353
HpyCH4III ACNGT 4 cut(s) 134, 206, 977, 1429
HpyCH4IV ACGT 1 cut(s) 963
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 5 cut(s) 312, 1188, 1194, 1419, 1455
HpySE526I ACGT 1 cut(s) 963
Hsp92I GRCGYC 1 cut(s) 963
KpnI GGTACC 1 cut(s) 1246
Ksp22I TGATCA 4 cut(s) 408, 865, 984, 1408
LmnI GCTCC 4 cut(s) 55, 912, 1159, 1291
Lsp1109I GCAGC 4 cut(s) 430, 509, 544, 921
LweI GCATC 4 cut(s) 216, 247, 738, 1153
MaeI CTAG 5 cut(s) 50, 1068, 1161, 1347, 1356
MaeII ACGT 1 cut(s) 963
MaeIII GTNAC 6 cut(s) 200, 250, 667, 952, 964, 1433
MboII GAAGA 5 cut(s) 20, 128, 138, 194, 934
MfeI CAATTG 1 cut(s) 1412
MflI RGATCY 3 cut(s) 359, 1336, 1402
MlsI TGGCCA 2 cut(s) 5, 465
MluCI AATT 5 cut(s) 684, 822, 849, 1392, 1412
MluNI TGGCCA 2 cut(s) 5, 465
MlyI GAGTC 3 cut(s) 161, 258, 608
MmeI TCCRAC 4 cut(s) 157, 454, 899, 1247
Mox20I TGGCCA 2 cut(s) 5, 465
MroXI GAANNNNTTC 1 cut(s) 189
MscI TGGCCA 2 cut(s) 5, 465
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 3 cut(s) 1006, 1080, 1448
Msp20I TGGCCA 2 cut(s) 5, 465
MspA1I CMGCKG 1 cut(s) 443
MspR9I CCNGG 3 cut(s) 1131, 1334, 1341
MunI CAATTG 1 cut(s) 1412
Mva1269I GAATGC 1 cut(s) 1141
MvaI CCWGG 3 cut(s) 1131, 1334, 1341
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 216
NcoI CCATGG 2 cut(s) 392, 740
NdeI CATATG 1 cut(s) 449
NlaIV GGNNCC 3 cut(s) 879, 1244, 1338
NmuCI GTSAC 5 cut(s) 200, 250, 952, 964, 1433
PaqCI CACCTGC 2 cut(s) 1012, 1125
PceI AGGCCT 1 cut(s) 487
PctI GAATGC 1 cut(s) 1141
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 3 cut(s) 160, 767, 1277
PfoI TCCNGGA 1 cut(s) 1339
PkrI GCNGC 6 cut(s) 337, 445, 524, 534, 936, 1108
PleI GAGTC 3 cut(s) 160, 257, 608
PpsI GAGTC 3 cut(s) 160, 257, 608
PpuMI RGGWCCY 1 cut(s) 878
Psp5II RGGWCCY 1 cut(s) 878
Psp6I CCWGG 3 cut(s) 1129, 1332, 1339
PspGI CCWGG 3 cut(s) 1129, 1332, 1339
PspN4I GGNNCC 3 cut(s) 879, 1244, 1338
PspPI GGNCC 2 cut(s) 476, 878
PspPPI RGGWCCY 1 cut(s) 878
PsrI GAACNNNNNNTAC 2 cut(s) 641, 673
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 3 cut(s) 359, 1336, 1402
RsaI GTAC 1 cut(s) 1244
RsaNI GTAC 1 cut(s) 1243
RseI CAYNNNNRTG 3 cut(s) 1006, 1080, 1448
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 6 cut(s) 336, 444, 523, 533, 935, 1107
Sau96I GGNCC 2 cut(s) 476, 878
SchI GAGTC 3 cut(s) 161, 258, 608
ScrFI CCNGG 3 cut(s) 1131, 1334, 1341
SfaNI GCATC 4 cut(s) 216, 247, 738, 1153
SfcI CTRYAG 2 cut(s) 102, 1374
SinI GGWCC 2 cut(s) 476, 878
SmiMI CAYNNNNRTG 3 cut(s) 1006, 1080, 1448
SmlI CTYRAG 3 cut(s) 416, 718, 757
SmoI CTYRAG 3 cut(s) 416, 718, 757
Sse9I AATT 5 cut(s) 684, 822, 849, 1392, 1412
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 6 cut(s) 53, 335, 338, 441, 1093, 1106
SspI AATATT 1 cut(s) 190
SspMI CTAG 5 cut(s) 50, 1068, 1161, 1347, 1356
StuI AGGCCT 1 cut(s) 487
StyD4I CCNGG 3 cut(s) 1129, 1332, 1339
StyI CCWWGG 2 cut(s) 392, 740
TaaI ACNGT 4 cut(s) 134, 206, 977, 1429
TaiI ACGT 1 cut(s) 966
TaqI TCGA 1 cut(s) 1078
TasI AATT 5 cut(s) 684, 822, 849, 1392, 1412
TauI GCSGC 2 cut(s) 338, 1109
TfiI GAWTC 3 cut(s) 160, 767, 1277
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 2 cut(s) 982, 1127
TseFI GTSAC 5 cut(s) 200, 250, 952, 964, 1433
TseI GCWGC 4 cut(s) 443, 522, 532, 934
Tsp45I GTSAC 5 cut(s) 200, 250, 952, 964, 1433
TspDTI ATGAA 2 cut(s) 542, 1064
TspRI CASTG 2 cut(s) 982, 1127
VpaK11BI GGWCC 2 cut(s) 476, 878
XapI RAATTY 1 cut(s) 1392
XcmI CCANNNNNNNNNTGG 2 cut(s) 399, 1224
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 5 cut(s) 50, 1068, 1161, 1347, 1356
ZraI GACGTC 1 cut(s) 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.