Rh5DG088100

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012797
Physical Location & Seq
Reverse (-)
7766869 .. 7769127
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG088100.1

Sequence Viewer

Length: 1524 bp
ATGGCCAAACAAACCCCATGTTCTTTTCTTCTTGTTCTTGTTCTAGGGGAGCTTTTCTTTGAAGGGGTTGTGAATGTCCAGAGTGAGTATATATCTGCAGTTGGTGATCCAGAAATGAGAAGAGACAGTCTTCGGGTTGCGATAGAGTCATGGAATCAATGCAATGAGGTTGGAGAAGAAAATCTTCAGACAGGTAGCCCAAGAGCTGCTGATTGCTTCGACATATACAGAGTTTATTCTCCACAGACAAACAGTGACAGTTGCTCTATCTGCAATGAGATGCCCTATGTATTAGTCCACAGAGTTACAGATGCAGACAACAAGTTAACGACAGGAGAGCCTTTTCTTGGTCTGCAACCGAAGTCTCAGTTTGATGTAGACCTTTACGCGGCGGATAAGGAACTCTATTTGGGATCTAAATGTGAAGTTGATGACACACCAAATCCATGGCAGTTTTGGATGATCATGCTCAAGAATGGCAACATGGACACTACCGCTGCCAAATGCCCGAAAAATGGTCAGAAAGTTGGACCATTTAGGCCCGACTACAACGCCTTTCCTTGTTTCGGAGATGGCTGCATGAAGCAGCCATATATTTACCATGACTATACCAAGTTGCGATGGCCTGACACAACTACTCTAAAGGGAAGGTTTTTCGGGTCGTGGGACTCAAACTGGGATGTGAGTAGAGGAACGATGGGGAACACTTCTTACTATTCTGTTACTTGGGAAAAGAAAATTGGAGAAGGAAGTTGGGTTTTCCACCATGTCTTGAGGACTTCAACAAAGTATCCATGGTTGATGCTGTACTTGAGATCAGATTCCACACATGGATTTTCTGGTGGCTACCATTACTCTACAAGAGGGATGTCCAAAATTATTCCAGAATCACCAAATTTTAAAGTGAGGTTCACCTTGAATGTGATCAAGGGAGGGGGTCCTCACAGCCAGTTCTACCTAATAGACATGGGGAGCTGTTGGAAGAACAATGGGCTGCCTTGTGATGGCAATGTGACTTCAGACGTCACCAGATACAGTGAAATGATCATAAATCCACAAACACCTGCATGGTGCAAGCCAGAAAAACTTGATGTATGTCCACCTTACCACACATTCTCTAATGGAACTAGAGTTCATCGAAATGACACATCCCGCTTCCCTTATGCGGCTTATCACCTGCACTGCTCACCCGGGAATGCAGAGCATCTTGAAGCTCCTTCTAATTTGTGTGATCCATATAGCAATCCTCAGCCTCAGGAGATAGTTCAAATCTTGCCACACCCTGTTTGGGGTGAGTATGGGTACCCTACAAAGCAAGGGGAGGGTTGGATTGGGGATTCAAGGACTTGGGAGCTTGATGTTGGGAGGTTATCACAATCACTTTACTTTTACCAGGATCCAGGAACTAGACCAGCTAGAAGGCAATGGAGGTCTATAGATTTGGGGACTGAAATTTTCAAAGATCCAGATCAAGTGGCTGAGTGGACTGTTAGTGACTTCAACATACTTGTGCCTGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

507

Amino Acids

57.79

Weight (kDa)

5.58

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 31 - 504 6e-256 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17030
fragaria_vesca FvH4_3g07190 FvH4_3g07210
malus_domestica MD00G1008000.v1.1
prunus_persica Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1
pyrus_communis pycom05g27320
rosa_chinensis RchiOBHm_Chr5g0011941
rosa_laevigata RLG00000031871
rosa_multiflora Rmu_sc0001475.1_g000003
rosa_roxburghii Rroxscaffold_1G00064650
rosa_rugosa Rorug04G0460100
rosa_samantha Rh5AG091700 Rh5BG087500 Rh5CG101400 Rh5DG088100
rosa_wichuraiana Rw5G008000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1072, 1185
AatII GACGTC 1 cut(s) 1026
Acc36I ACCTGC 2 cut(s) 1072, 1185
Acc65I GGTACC 1 cut(s) 1302
AccB1I GGYRCC 1 cut(s) 1302
AccI GTMKAC 1 cut(s) 378
AccII CGCG 1 cut(s) 389
AciI CCGC 5 cut(s) 389, 392, 495, 1153, 1166
AclWI GGATC 6 cut(s) 101, 421, 1226, 1391, 1404, 1457
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 895, 1452
AcuI CTGAAG 2 cut(s) 170, 1002
AcyI GRCGYC 1 cut(s) 1023
AfaI GTAC 2 cut(s) 809, 1304
AfiI CCNNNNNNNGG 8 cut(s) 347, 388, 515, 566, 1004, 1165, 1288, 1289
AgsI TTSAA 8 cut(s) 62, 783, 919, 1211, 1268, 1341, 1459, 1501
AjnI CCWGG 2 cut(s) 1392, 1399
AjuI GAANNNNNNNTTGG 2 cut(s) 723, 755
AloI GAACNNNNNNTCC 2 cut(s) 1116, 1148
AluBI AGCT 6 cut(s) 52, 206, 975, 1214, 1354, 1415
AluI AGCT 6 cut(s) 52, 206, 975, 1214, 1354, 1415
Alw26I GTCTC 2 cut(s) 117, 369
AlwI GGATC 6 cut(s) 101, 421, 1226, 1391, 1404, 1457
Ama87I CYCGRG 1 cut(s) 1190
AoxI GGCC 3 cut(s) 3, 539, 623
ApeKI GCWGC 5 cut(s) 206, 497, 576, 586, 994
ApoI RAATTY 2 cut(s) 895, 1452
Asp700I GAANNNNTTC 1 cut(s) 183
Asp718I GGTACC 1 cut(s) 1302
AspS9I GGNCC 3 cut(s) 530, 540, 938
AsuC2I CCSGG 2 cut(s) 1191, 1192
AsuHPI GGTGA 7 cut(s) 116, 882, 904, 1018, 1166, 1179, 1304
AvaI CYCGRG 1 cut(s) 1190
AvaII GGWCC 2 cut(s) 530, 938
AxyI CCTNAGG 1 cut(s) 1254
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 1396
BanI GGYRCC 1 cut(s) 1302
BbsI GAAGAC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 1248
BbvI GCAGC 5 cut(s) 193, 484, 563, 598, 981
BccI CCATC 4 cut(s) 566, 615, 691, 998
BciT130I CCWGG 2 cut(s) 1394, 1401
BciVI GTATCC 1 cut(s) 801
BclI TGATCA 3 cut(s) 462, 924, 1044
BcnI CCSGG 2 cut(s) 1191, 1192
BcoDI GTCTC 2 cut(s) 117, 369
BfaI CTAG 4 cut(s) 44, 1128, 1407, 1416
BfmI CTRYAG 2 cut(s) 96, 1434
BfuAI ACCTGC 2 cut(s) 1072, 1185
BfuI GTATCC 1 cut(s) 801
BisI GCNGC 7 cut(s) 207, 390, 498, 577, 587, 995, 1167
BlsI GCNGC 7 cut(s) 208, 391, 499, 578, 588, 996, 1168
Bme1390I CCNGG 4 cut(s) 1191, 1192, 1394, 1401
Bme18I GGWCC 2 cut(s) 530, 938
BmeT110I CYCGRG 1 cut(s) 1190
BmgT120I GGNCC 3 cut(s) 530, 540, 938
BmiI GGNNCC 3 cut(s) 939, 1304, 1398
BmrFI CCNGG 4 cut(s) 1191, 1192, 1394, 1401
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 4 cut(s) 270, 301, 792, 1213
BmuI ACTGGG 1 cut(s) 685
BpiI GAAGAC 1 cut(s) 122
Bpu10I CCTNAGC 2 cut(s) 1248, 1515
BpuEI CTTGAG 3 cut(s) 455, 793, 832
BpuMI CCSGG 2 cut(s) 1191, 1192
BsaBI GATNNNNATC 1 cut(s) 1467
BsaHI GRCGYC 1 cut(s) 1023
BsaJI CCNNGG 3 cut(s) 446, 794, 1190
Bsc4I CCNNNNNNNGG 8 cut(s) 347, 388, 515, 566, 1004, 1165, 1288, 1289
Bse1I ACTGG 2 cut(s) 680, 949
Bse21I CCTNAGG 1 cut(s) 1254
Bse3DI GCAATG 4 cut(s) 169, 280, 1015, 1430
Bse8I GATNNNNATC 1 cut(s) 1467
BseBI CCWGG 2 cut(s) 1394, 1401
BseDI CCNNGG 3 cut(s) 446, 794, 1190
BseGI GGATG 4 cut(s) 465, 685, 873, 1148
BseJI GATNNNNATC 1 cut(s) 1467
BseLI CCNNNNNNNGG 8 cut(s) 347, 388, 515, 566, 1004, 1165, 1288, 1289
BseMI GCAATG 4 cut(s) 169, 280, 1015, 1430
BseMII CTCAG 5 cut(s) 380, 1262, 1268, 1470, 1506
BseNI ACTGG 2 cut(s) 680, 949
BseXI GCAGC 5 cut(s) 193, 484, 563, 598, 981
BsgI GTGCAG 1 cut(s) 1163
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 3 cut(s) 5, 541, 625
BshNI GGYRCC 1 cut(s) 1302
BsiHKCI CYCGRG 1 cut(s) 1190
BsiSI CCGG 1 cut(s) 1191
BslFI GGGAC 2 cut(s) 680, 1459
BslI CCNNNNNNNGG 8 cut(s) 347, 388, 515, 566, 1004, 1165, 1288, 1289
BsmAI GTCTC 2 cut(s) 117, 369
BsmFI GGGAC 2 cut(s) 680, 1459
BsmI GAATGC 1 cut(s) 1201
BsnI GGCC 3 cut(s) 5, 541, 625
BsoBI CYCGRG 1 cut(s) 1190
Bsp19I CCATGG 2 cut(s) 446, 794
BspACI CCGC 5 cut(s) 389, 392, 495, 1153, 1166
BspANI GGCC 3 cut(s) 5, 541, 625
BspCNI CTCAG 5 cut(s) 379, 1261, 1267, 1471, 1507
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 3 cut(s) 939, 1304, 1398
BspMAI CTGCAG 1 cut(s) 100
BspMI ACCTGC 2 cut(s) 1072, 1185
BspPI GGATC 6 cut(s) 101, 421, 1226, 1391, 1404, 1457
BspT107I GGYRCC 1 cut(s) 1302
BsrDI GCAATG 4 cut(s) 169, 280, 1015, 1430
BsrI ACTGG 2 cut(s) 680, 949
BssECI CCNNGG 3 cut(s) 446, 794, 1190
BssNI GRCGYC 1 cut(s) 1023
BssT1I CCWWGG 2 cut(s) 446, 794
Bst2UI CCWGG 2 cut(s) 1394, 1401
Bst4CI ACNGT 5 cut(s) 128, 254, 260, 1037, 1489
Bst6I CTCTTC 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 1023
BstC8I GCNNGC 1 cut(s) 1076
BstDEI CTNAG 5 cut(s) 366, 1248, 1254, 1479, 1515
BstDSI CCRYGG 2 cut(s) 446, 794
BstF5I GGATG 4 cut(s) 465, 685, 873, 1148
BstFNI CGCG 1 cut(s) 389
BstMAI GTCTC 2 cut(s) 117, 369
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 2 cut(s) 1394, 1401
BstSCI CCNGG 4 cut(s) 1189, 1190, 1392, 1399
BstSFI CTRYAG 2 cut(s) 96, 1434
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 5 cut(s) 193, 484, 563, 598, 981
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 3 cut(s) 413, 1396, 1462
BstXI CCANNNNNNTGG 1 cut(s) 447
BstYI RGATCY 3 cut(s) 413, 1396, 1462
Bsu36I CCTNAGG 1 cut(s) 1254
BsuI GTATCC 1 cut(s) 801
BsuRI GGCC 3 cut(s) 5, 541, 625
BtgI CCRYGG 2 cut(s) 446, 794
BtgZI GCGATG 1 cut(s) 634
BtsCI GGATG 4 cut(s) 465, 685, 873, 1148
BtsI GCAGTG 1 cut(s) 1180
BtsIMutI CAGTG 3 cut(s) 259, 1042, 1180
BveI ACCTGC 2 cut(s) 1072, 1185
Cac8I GCNNGC 1 cut(s) 1076
Cfr13I GGNCC 3 cut(s) 530, 540, 938
Cfr9I CCCGGG 1 cut(s) 1190
Csp6I GTAC 2 cut(s) 808, 1303
CviQI GTAC 2 cut(s) 808, 1303
DdeI CTNAG 5 cut(s) 366, 1248, 1254, 1479, 1515
DraI TTTAAA 1 cut(s) 901
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
EciI GGCGGA 1 cut(s) 407
Eco130I CCWWGG 2 cut(s) 446, 794
Eco47I GGWCC 2 cut(s) 530, 938
Eco57I CTGAAG 2 cut(s) 170, 1002
Eco81I CCTNAGG 1 cut(s) 1254
Eco88I CYCGRG 1 cut(s) 1190
EcoO109I RGGNCCY 1 cut(s) 938
EcoRII CCWGG 2 cut(s) 1392, 1399
EcoT14I CCWWGG 2 cut(s) 446, 794
ErhI CCWWGG 2 cut(s) 446, 794
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FaqI GGGAC 2 cut(s) 680, 1459
FauI CCCGC 1 cut(s) 1160
FbaI TGATCA 3 cut(s) 462, 924, 1044
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 7 cut(s) 207, 390, 498, 577, 587, 995, 1167
FokI GGATG 4 cut(s) 472, 692, 880, 1135
Fsp4HI GCNGC 7 cut(s) 207, 390, 498, 577, 587, 995, 1167
FspBI CTAG 4 cut(s) 44, 1128, 1407, 1416
GluI GCNGC 7 cut(s) 207, 390, 498, 577, 587, 995, 1167
HaeIII GGCC 3 cut(s) 5, 541, 625
HapII CCGG 1 cut(s) 1191
Hin1I GRCGYC 1 cut(s) 1023
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 6 cut(s) 146, 154, 668, 821, 887, 1337
HpaI GTTAAC 1 cut(s) 327
HpaII CCGG 1 cut(s) 1191
HphI GGTGA 7 cut(s) 116, 882, 904, 1018, 1166, 1179, 1304
Hpy166II GTNNAC 6 cut(s) 298, 327, 379, 912, 1100, 1485
Hpy188I TCNGA 5 cut(s) 189, 522, 569, 820, 1021
Hpy188III TCNNGA 8 cut(s) 79, 110, 472, 772, 884, 1208, 1256, 1466
Hpy8I GTNNAC 6 cut(s) 298, 327, 379, 912, 1100, 1485
HpyAV CCTTC 5 cut(s) 56, 642, 740, 1227, 1413
HpyCH4III ACNGT 5 cut(s) 128, 254, 260, 1037, 1489
HpyCH4IV ACGT 1 cut(s) 1023
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 5 cut(s) 366, 1248, 1254, 1479, 1515
HpySE526I ACGT 1 cut(s) 1023
Hsp92I GRCGYC 1 cut(s) 1023
KpnI GGTACC 1 cut(s) 1306
Ksp22I TGATCA 3 cut(s) 462, 924, 1044
KspAI GTTAAC 1 cut(s) 327
LmnI GCTCC 4 cut(s) 49, 972, 1219, 1351
Lsp1109I GCAGC 5 cut(s) 193, 484, 563, 598, 981
LweI GCATC 4 cut(s) 270, 301, 792, 1213
MaeI CTAG 4 cut(s) 44, 1128, 1407, 1416
MaeII ACGT 1 cut(s) 1023
MaeIII GTNAC 6 cut(s) 254, 304, 721, 1012, 1024, 1493
MboII GAAGA 6 cut(s) 20, 122, 132, 176, 188, 994
MflI RGATCY 3 cut(s) 413, 1396, 1462
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 738, 876, 895, 1222, 1452
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 155, 662
MmeI TCCRAC 4 cut(s) 151, 508, 959, 1307
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 183
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 326, 900
MslI CAYNNNNRTG 3 cut(s) 1066, 1140, 1508
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 1 cut(s) 1191
MspR9I CCNGG 4 cut(s) 1191, 1192, 1394, 1401
Mva1269I GAATGC 1 cut(s) 1201
MvaI CCWGG 2 cut(s) 1394, 1401
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 270
NciI CCSGG 2 cut(s) 1191, 1192
NcoI CCATGG 2 cut(s) 446, 794
NlaIV GGNNCC 3 cut(s) 939, 1304, 1398
NmuCI GTSAC 4 cut(s) 254, 1012, 1024, 1493
PaqCI CACCTGC 2 cut(s) 1072, 1185
PctI GAATGC 1 cut(s) 1201
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 4 cut(s) 154, 821, 887, 1337
PfoI TCCNGGA 1 cut(s) 1399
PkrI GCNGC 7 cut(s) 208, 391, 499, 578, 588, 996, 1168
PleI GAGTC 2 cut(s) 154, 662
PpsI GAGTC 2 cut(s) 154, 662
PpuMI RGGWCCY 1 cut(s) 938
Psp5II RGGWCCY 1 cut(s) 938
Psp6I CCWGG 2 cut(s) 1392, 1399
PspGI CCWGG 2 cut(s) 1392, 1399
PspN4I GGNNCC 3 cut(s) 939, 1304, 1398
PspPI GGNCC 3 cut(s) 530, 540, 938
PspPPI RGGWCCY 1 cut(s) 938
PsrI GAACNNNNNNTAC 2 cut(s) 695, 727
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 3 cut(s) 413, 1396, 1462
RsaI GTAC 2 cut(s) 809, 1304
RsaNI GTAC 2 cut(s) 808, 1303
RseI CAYNNNNRTG 3 cut(s) 1066, 1140, 1508
SaqAI TTAA 2 cut(s) 326, 900
SatI GCNGC 7 cut(s) 207, 390, 498, 577, 587, 995, 1167
Sau96I GGNCC 3 cut(s) 530, 540, 938
SchI GAGTC 2 cut(s) 155, 662
ScrFI CCNGG 4 cut(s) 1191, 1192, 1394, 1401
SfaNI GCATC 4 cut(s) 270, 301, 792, 1213
SfcI CTRYAG 2 cut(s) 96, 1434
SinI GGWCC 2 cut(s) 530, 938
SmaI CCCGGG 1 cut(s) 1192
SmiMI CAYNNNNRTG 3 cut(s) 1066, 1140, 1508
SmlI CTYRAG 3 cut(s) 470, 772, 811
SmoI CTYRAG 3 cut(s) 470, 772, 811
Sse9I AATT 5 cut(s) 738, 876, 895, 1222, 1452
SsiI CCGC 5 cut(s) 389, 392, 495, 1153, 1166
SspMI CTAG 4 cut(s) 44, 1128, 1407, 1416
StyD4I CCNGG 4 cut(s) 1189, 1190, 1392, 1399
StyI CCWWGG 2 cut(s) 446, 794
TaaI ACNGT 5 cut(s) 128, 254, 260, 1037, 1489
TaiI ACGT 1 cut(s) 1026
TaqI TCGA 2 cut(s) 219, 1138
TasI AATT 5 cut(s) 738, 876, 895, 1222, 1452
TatI WGTACW 1 cut(s) 807
TauI GCSGC 2 cut(s) 392, 1169
TfiI GAWTC 4 cut(s) 154, 821, 887, 1337
Tru1I TTAA 2 cut(s) 326, 900
Tru9I TTAA 2 cut(s) 326, 900
TscAI CASTG 3 cut(s) 259, 1042, 1187
TseFI GTSAC 4 cut(s) 254, 1012, 1024, 1493
TseI GCWGC 5 cut(s) 206, 497, 576, 586, 994
Tsp45I GTSAC 4 cut(s) 254, 1012, 1024, 1493
TspDTI ATGAA 2 cut(s) 596, 1124
TspMI CCCGGG 1 cut(s) 1190
TspRI CASTG 3 cut(s) 259, 1042, 1187
VpaK11BI GGWCC 2 cut(s) 530, 938
XapI RAATTY 2 cut(s) 895, 1452
XcmI CCANNNNNNNNNTGG 2 cut(s) 453, 1284
XmaI CCCGGG 1 cut(s) 1190
XmiI GTMKAC 1 cut(s) 378
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 4 cut(s) 44, 1128, 1407, 1416
ZraI GACGTC 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.