FvH4_3g07210

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012797
Physical Location & Seq
Forward (+)
4266457 .. 4268983
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07210.t1

Sequence Viewer

Length: 1542 bp
ATGGCCAATAAAATCCCATGTTCCTTTTTTCTTGTTCTTTTTCTGGGGGAGCTTTTGTTTGAAGGTGTTGCGAATGTCAAGAGTGAGTATATATCTGCAGTTGGTGATCCAGAAATGAGAAGAGACGGTCTTCGGGTTGCAATAGAGTCATGGAATCAGTGCAATGAGGTTGGACAAGACAATCCTCAGACAGGTAGCCCAAGAGCTGCTGATTGCTTTGACATATACAAAATTTATTCTCCACAGACAAACAGTGACAGTTGCTCTATCTGCAATGAGATGCCCTATGTATTAGTCCACAGAGTTACAGATGCAGACAACAAGTTAAGGACAGGAGAGCCGTTTCTTGGTCTACAACCGAAGTCTCAGTTTGATGTAGACCTTTACACAGCGGATAAGGAACTCTATTTGGGATCTAAATGTGAAGTTGATGACACCCCCAATCCATGGCAGTTTTGGATGATCATGCTCAAGAGTGGCAACATGGACACTAACGCTGCCAAATGCCCAAAAAATGGCCACAAAGTTGGACCATTTAGGCCTGACTACAATGCCTTTCCTTGTTTCGGAGAGGGCTGCATGAACCAGCCATATATATACCATGACTATACCAAGTTGCAATGGCCTGATATAACTACTCTAAAGGGAAGGTTTTTCGGGTCATGGGACTCGAATTGGGATATGAGTAGAGGAATGGTGGAGAACACTTCTTACTATTCTGTTACTTGGGAAAAGAAAATTGGAGAAGGAAGTTGGGTTTTCCACCATGTCTTGAGGACTTCAGCAAAGTATCCATGGCTGATGCTTTACTTGAGATCAGATGCCACACATGGATTTTCTGGTGGCTACCATTACTCTACAAGAGGGATGTCCAAAATTGTAAGTTACTATTTCCTTATTCCAGAATCACCAAATTTTAAAGTGAGGTTCACCTTGAATGTGATCAAGGGAGGGGGTCCTAGCAGCCAGTTCTACCTAATGGACATGGGGAGCTGTTGGAAGAACAATGGGCAGCCTTGTGATGGCAATGTGACCTCAGATGTCACCAGATACAGTGAAATGATCATAAATCCACAAGCATCTGCATGGTGCAAGCCAGAAAAATTCGATATGTGTCCACCTTACCACACATTCTCCAACGGAACTAGAGTTCATCGAAATGACACATCTCGCTTCCCTTATGCAGCTTATCACCTGCACTGCTCACCCGGGAATGCAGAGCATCTTGAGGCTCTTTCTAGTCTGTGTGATCCATATAGCAATCCTCAGCCTCAGGAGATACTTCAAATCTTGCCACACCCAGTTTGGGGTGAGTATGGGTACCCTACAAAGCAAGGGGAGGGTTGGATAGGGGATTCAAGGACTTGGGAGCTTGATGTTGGGAGGTTATCACAATCACTTTACTTTTACCAGGATCCAGGAACTAGACCAGCTAGAAGGCAATGGACGTCTATCGATTTGGGGACTGAAATTTTCAAAGATCCTGATCAAGTTGCTGAGTGGACTGTTAGTGACTTCGACATACTTGTGCTTGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

514

Amino Acids

58.6

Weight (kDa)

5.43

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7705 PF24804 31 - 510 1.8e-252 Domain of unknown function (DUF7705)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17030
fragaria_vesca FvH4_3g07190 FvH4_3g07210
malus_domestica MD00G1008000.v1.1
prunus_persica Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1 Prupe.4G067900_v2.0.a1
pyrus_communis pycom05g27320
rosa_chinensis RchiOBHm_Chr5g0011941
rosa_laevigata RLG00000031871
rosa_multiflora Rmu_sc0001475.1_g000003
rosa_roxburghii Rroxscaffold_1G00064650
rosa_rugosa Rorug04G0460100
rosa_samantha Rh5AG091700 Rh5BG087500 Rh5CG101400 Rh5DG088100
rosa_wichuraiana Rw5G008000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1203
AatII GACGTC 1 cut(s) 1451
Acc36I ACCTGC 1 cut(s) 1203
Acc65I GGTACC 1 cut(s) 1320
AccB1I GGYRCC 1 cut(s) 1320
AccB7I CCANNNNNTGG 2 cut(s) 447, 515
AccI GTMKAC 2 cut(s) 352, 378
AciI CCGC 1 cut(s) 392
AclWI GGATC 6 cut(s) 101, 421, 1244, 1409, 1422, 1475
AcoI YGGCCR 2 cut(s) 3, 517
AcsI RAATTY 4 cut(s) 231, 913, 1103, 1470
AcuI CTGAAG 1 cut(s) 765
AcyI GRCGYC 1 cut(s) 1448
AfaI GTAC 1 cut(s) 1322
AfiI CCNNNNNNNGG 8 cut(s) 191, 347, 447, 515, 566, 1022, 1306, 1307
AgsI TTSAA 5 cut(s) 62, 937, 1286, 1359, 1477
AjnI CCWGG 2 cut(s) 1410, 1417
AjuI GAANNNNNNNTTGG 2 cut(s) 723, 755
AloI GAACNNNNNNTCC 2 cut(s) 1134, 1166
AluBI AGCT 6 cut(s) 52, 206, 993, 1187, 1372, 1433
AluI AGCT 6 cut(s) 52, 206, 993, 1187, 1372, 1433
Alw26I GTCTC 2 cut(s) 117, 369
AlwI GGATC 6 cut(s) 101, 421, 1244, 1409, 1422, 1475
Ama87I CYCGRG 1 cut(s) 1208
AoxI GGCC 4 cut(s) 3, 517, 539, 623
ApeKI GCWGC 6 cut(s) 206, 497, 576, 963, 1012, 1184
ApoI RAATTY 4 cut(s) 231, 913, 1103, 1470
Asp718I GGTACC 1 cut(s) 1320
AspS9I GGNCC 2 cut(s) 530, 956
AsuC2I CCSGG 2 cut(s) 1209, 1210
AsuHPI GGTGA 7 cut(s) 116, 900, 922, 1036, 1184, 1197, 1322
AvaI CYCGRG 1 cut(s) 1208
AvaII GGWCC 2 cut(s) 530, 956
AxyI CCTNAGG 1 cut(s) 1272
BalI TGGCCA 2 cut(s) 5, 519
BamHI GGATCC 1 cut(s) 1414
BanI GGYRCC 1 cut(s) 1320
BbsI GAAGAC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 1266
BbvI GCAGC 6 cut(s) 193, 484, 563, 975, 1024, 1196
BccI CCATC 1 cut(s) 1016
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 2 cut(s) 1412, 1419
BciVI GTATCC 1 cut(s) 801
BclI TGATCA 4 cut(s) 462, 942, 1062, 1486
BcnI CCSGG 2 cut(s) 1209, 1210
BcoDI GTCTC 2 cut(s) 117, 369
BfaI CTAG 5 cut(s) 960, 1146, 1239, 1425, 1434
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 1203
BfuI GTATCC 1 cut(s) 801
BisI GCNGC 6 cut(s) 207, 498, 577, 964, 1013, 1185
BlsI GCNGC 6 cut(s) 208, 499, 578, 965, 1014, 1186
Bme1390I CCNGG 4 cut(s) 1209, 1210, 1412, 1419
Bme18I GGWCC 2 cut(s) 530, 956
BmeT110I CYCGRG 1 cut(s) 1208
BmgT120I GGNCC 2 cut(s) 530, 956
BmiI GGNNCC 3 cut(s) 957, 1322, 1416
BmrFI CCNGG 4 cut(s) 1209, 1210, 1412, 1419
BmrI ACTGGG 1 cut(s) 1295
BmsI GCATC 6 cut(s) 270, 301, 792, 811, 1088, 1231
BmuI ACTGGG 1 cut(s) 1295
BpiI GAAGAC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 1266
BpuEI CTTGAG 4 cut(s) 455, 793, 832, 1247
BpuMI CCSGG 2 cut(s) 1209, 1210
Bsa29I ATCGAT 1 cut(s) 1455
BsaBI GATNNNNATC 1 cut(s) 1485
BsaHI GRCGYC 1 cut(s) 1448
BsaJI CCNNGG 3 cut(s) 446, 794, 1208
BsaXI ACNNNNNCTCC 4 cut(s) 41, 71, 1118, 1148
Bsc4I CCNNNNNNNGG 8 cut(s) 191, 347, 447, 515, 566, 1022, 1306, 1307
Bse1I ACTGG 2 cut(s) 967, 1301
Bse21I CCTNAGG 1 cut(s) 1272
Bse3DI GCAATG 5 cut(s) 169, 280, 626, 1033, 1448
Bse8I GATNNNNATC 1 cut(s) 1485
BseBI CCWGG 2 cut(s) 1412, 1419
BseCI ATCGAT 1 cut(s) 1455
BseDI CCNNGG 3 cut(s) 446, 794, 1208
BseGI GGATG 2 cut(s) 465, 873
BseJI GATNNNNATC 1 cut(s) 1485
BseLI CCNNNNNNNGG 8 cut(s) 191, 347, 447, 515, 566, 1022, 1306, 1307
BseMI GCAATG 5 cut(s) 169, 280, 626, 1033, 1448
BseMII CTCAG 6 cut(s) 200, 380, 1050, 1280, 1286, 1488
BseNI ACTGG 2 cut(s) 967, 1301
BseXI GCAGC 6 cut(s) 193, 484, 563, 975, 1024, 1196
BsgI GTGCAG 1 cut(s) 1181
BshFI GGCC 4 cut(s) 5, 519, 541, 625
BshNI GGYRCC 1 cut(s) 1320
BshVI ATCGAT 1 cut(s) 1455
BsiHKCI CYCGRG 1 cut(s) 1208
BsiSI CCGG 1 cut(s) 1209
BslFI GGGAC 2 cut(s) 680, 1477
BslI CCNNNNNNNGG 8 cut(s) 191, 347, 447, 515, 566, 1022, 1306, 1307
BsmAI GTCTC 2 cut(s) 117, 369
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 2 cut(s) 680, 1477
BsmI GAATGC 1 cut(s) 1219
BsnI GGCC 4 cut(s) 5, 519, 541, 625
BsoBI CYCGRG 1 cut(s) 1208
Bsp19I CCATGG 2 cut(s) 446, 794
BspACI CCGC 1 cut(s) 392
BspANI GGCC 4 cut(s) 5, 519, 541, 625
BspCNI CTCAG 6 cut(s) 199, 379, 1049, 1279, 1285, 1489
BspDI ATCGAT 1 cut(s) 1455
BspLI GGNNCC 3 cut(s) 957, 1322, 1416
BspMAI CTGCAG 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 1203
BspPI GGATC 6 cut(s) 101, 421, 1244, 1409, 1422, 1475
BspT107I GGYRCC 1 cut(s) 1320
BsrDI GCAATG 5 cut(s) 169, 280, 626, 1033, 1448
BsrI ACTGG 2 cut(s) 967, 1301
BssECI CCNNGG 3 cut(s) 446, 794, 1208
BssNI GRCGYC 1 cut(s) 1448
BssT1I CCWWGG 2 cut(s) 446, 794
Bst2UI CCWGG 2 cut(s) 1412, 1419
Bst4CI ACNGT 5 cut(s) 128, 254, 260, 1055, 1507
Bst6I CTCTTC 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 1448
BstC8I GCNNGC 1 cut(s) 1094
BstDEI CTNAG 6 cut(s) 186, 366, 1036, 1266, 1272, 1497
BstDSI CCRYGG 2 cut(s) 446, 794
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 465, 873
BstMAI GTCTC 2 cut(s) 117, 369
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 2 cut(s) 1412, 1419
BstSCI CCNGG 4 cut(s) 1207, 1208, 1410, 1417
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 6 cut(s) 193, 484, 563, 975, 1024, 1196
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 3 cut(s) 413, 1414, 1480
BstXI CCANNNNNNTGG 1 cut(s) 527
BstYI RGATCY 3 cut(s) 413, 1414, 1480
Bsu15I ATCGAT 1 cut(s) 1455
Bsu36I CCTNAGG 1 cut(s) 1272
BsuI GTATCC 1 cut(s) 801
BsuRI GGCC 4 cut(s) 5, 519, 541, 625
BsuTUI ATCGAT 1 cut(s) 1455
BtgI CCRYGG 2 cut(s) 446, 794
BtsCI GGATG 2 cut(s) 465, 873
BtsI GCAGTG 1 cut(s) 1198
BtsIMutI CAGTG 4 cut(s) 164, 259, 1060, 1198
BveI ACCTGC 1 cut(s) 1203
Cac8I GCNNGC 1 cut(s) 1094
Cfr13I GGNCC 2 cut(s) 530, 956
Cfr9I CCCGGG 1 cut(s) 1208
ClaI ATCGAT 1 cut(s) 1455
Csp6I GTAC 1 cut(s) 1321
CviQI GTAC 1 cut(s) 1321
DdeI CTNAG 6 cut(s) 186, 366, 1036, 1266, 1272, 1497
DraI TTTAAA 1 cut(s) 919
EaeI YGGCCR 2 cut(s) 3, 517
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 446, 794
Eco147I AGGCCT 1 cut(s) 541
Eco47I GGWCC 2 cut(s) 530, 956
Eco57I CTGAAG 1 cut(s) 765
Eco81I CCTNAGG 1 cut(s) 1272
Eco88I CYCGRG 1 cut(s) 1208
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 956
EcoRII CCWGG 2 cut(s) 1410, 1417
EcoT14I CCWWGG 2 cut(s) 446, 794
ErhI CCWWGG 2 cut(s) 446, 794
Esp3I CGTCTC 1 cut(s) 117
FaqI GGGAC 2 cut(s) 680, 1477
FbaI TGATCA 4 cut(s) 462, 942, 1062, 1486
FblI GTMKAC 2 cut(s) 352, 378
Fnu4HI GCNGC 6 cut(s) 207, 498, 577, 964, 1013, 1185
FokI GGATG 2 cut(s) 472, 880
Fsp4HI GCNGC 6 cut(s) 207, 498, 577, 964, 1013, 1185
FspBI CTAG 5 cut(s) 960, 1146, 1239, 1425, 1434
GluI GCNGC 6 cut(s) 207, 498, 577, 964, 1013, 1185
HaeIII GGCC 4 cut(s) 5, 519, 541, 625
HapII CCGG 1 cut(s) 1209
Hin1I GRCGYC 1 cut(s) 1448
HinfI GANTC 5 cut(s) 146, 154, 668, 905, 1355
HpaII CCGG 1 cut(s) 1209
HphI GGTGA 7 cut(s) 116, 900, 922, 1036, 1184, 1197, 1322
Hpy166II GTNNAC 6 cut(s) 298, 353, 379, 930, 1118, 1503
Hpy188I TCNGA 4 cut(s) 189, 569, 820, 1039
Hpy188III TCNNGA 8 cut(s) 79, 110, 472, 772, 902, 1226, 1274, 1484
Hpy8I GTNNAC 6 cut(s) 298, 353, 379, 930, 1118, 1503
HpyAV CCTTC 4 cut(s) 56, 642, 740, 1431
HpyCH4III ACNGT 5 cut(s) 128, 254, 260, 1055, 1507
HpyCH4IV ACGT 1 cut(s) 1448
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 6 cut(s) 186, 366, 1036, 1266, 1272, 1497
HpySE526I ACGT 1 cut(s) 1448
Hsp92I GRCGYC 1 cut(s) 1448
KpnI GGTACC 1 cut(s) 1324
Ksp22I TGATCA 4 cut(s) 462, 942, 1062, 1486
LmnI GCTCC 3 cut(s) 49, 990, 1369
Lsp1109I GCAGC 6 cut(s) 193, 484, 563, 975, 1024, 1196
LweI GCATC 6 cut(s) 270, 301, 792, 811, 1088, 1231
MaeI CTAG 5 cut(s) 960, 1146, 1239, 1425, 1434
MaeII ACGT 1 cut(s) 1448
MaeIII GTNAC 7 cut(s) 254, 304, 721, 884, 1030, 1042, 1511
MboII GAAGA 3 cut(s) 122, 132, 1012
MflI RGATCY 3 cut(s) 413, 1414, 1480
MlsI TGGCCA 2 cut(s) 5, 519
MluCI AATT 7 cut(s) 231, 673, 738, 876, 913, 1103, 1470
MluNI TGGCCA 2 cut(s) 5, 519
MlyI GAGTC 2 cut(s) 155, 662
MmeI TCCRAC 5 cut(s) 151, 508, 977, 1161, 1325
Mox20I TGGCCA 2 cut(s) 5, 519
MscI TGGCCA 2 cut(s) 5, 519
MseI TTAA 2 cut(s) 326, 918
MslI CAYNNNNRTG 3 cut(s) 1084, 1158, 1526
Msp20I TGGCCA 2 cut(s) 5, 519
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 1209
MspR9I CCNGG 4 cut(s) 1209, 1210, 1412, 1419
Mva1269I GAATGC 1 cut(s) 1219
MvaI CCWGG 2 cut(s) 1412, 1419
MwoI GCNNNNNNNGC 1 cut(s) 270
NciI CCSGG 2 cut(s) 1209, 1210
NcoI CCATGG 2 cut(s) 446, 794
NlaIV GGNNCC 3 cut(s) 957, 1322, 1416
NmuCI GTSAC 4 cut(s) 254, 1030, 1042, 1511
PaqCI CACCTGC 1 cut(s) 1203
PceI AGGCCT 1 cut(s) 541
PctI GAATGC 1 cut(s) 1219
PfeI GAWTC 3 cut(s) 154, 905, 1355
PflMI CCANNNNNTGG 2 cut(s) 447, 515
PfoI TCCNGGA 1 cut(s) 1417
PkrI GCNGC 6 cut(s) 208, 499, 578, 965, 1014, 1186
PleI GAGTC 2 cut(s) 154, 662
PpsI GAGTC 2 cut(s) 154, 662
PpuMI RGGWCCY 1 cut(s) 956
Psp5II RGGWCCY 1 cut(s) 956
Psp6I CCWGG 2 cut(s) 1410, 1417
PspGI CCWGG 2 cut(s) 1410, 1417
PspN4I GGNNCC 3 cut(s) 957, 1322, 1416
PspPI GGNCC 2 cut(s) 530, 956
PspPPI RGGWCCY 1 cut(s) 956
PsrI GAACNNNNNNTAC 2 cut(s) 695, 727
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 3 cut(s) 413, 1414, 1480
RsaI GTAC 1 cut(s) 1322
RsaNI GTAC 1 cut(s) 1321
RseI CAYNNNNRTG 3 cut(s) 1084, 1158, 1526
SaqAI TTAA 2 cut(s) 326, 918
SatI GCNGC 6 cut(s) 207, 498, 577, 964, 1013, 1185
Sau96I GGNCC 2 cut(s) 530, 956
SchI GAGTC 2 cut(s) 155, 662
ScrFI CCNGG 4 cut(s) 1209, 1210, 1412, 1419
SfaNI GCATC 6 cut(s) 270, 301, 792, 811, 1088, 1231
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 2 cut(s) 530, 956
SmaI CCCGGG 1 cut(s) 1210
SmiMI CAYNNNNRTG 3 cut(s) 1084, 1158, 1526
SmlI CTYRAG 5 cut(s) 470, 772, 811, 1226, 1532
SmoI CTYRAG 5 cut(s) 470, 772, 811, 1226, 1532
Sse9I AATT 7 cut(s) 231, 673, 738, 876, 913, 1103, 1470
SseBI AGGCCT 1 cut(s) 541
SsiI CCGC 1 cut(s) 392
SspMI CTAG 5 cut(s) 960, 1146, 1239, 1425, 1434
StuI AGGCCT 1 cut(s) 541
StyD4I CCNGG 4 cut(s) 1207, 1208, 1410, 1417
StyI CCWWGG 2 cut(s) 446, 794
TaaI ACNGT 5 cut(s) 128, 254, 260, 1055, 1507
TaiI ACGT 1 cut(s) 1451
TaqI TCGA 5 cut(s) 671, 1107, 1156, 1455, 1518
TasI AATT 7 cut(s) 231, 673, 738, 876, 913, 1103, 1470
TfiI GAWTC 3 cut(s) 154, 905, 1355
Tru1I TTAA 2 cut(s) 326, 918
Tru9I TTAA 2 cut(s) 326, 918
TscAI CASTG 4 cut(s) 164, 259, 1060, 1205
TseFI GTSAC 4 cut(s) 254, 1030, 1042, 1511
TseI GCWGC 6 cut(s) 206, 497, 576, 963, 1012, 1184
Tsp45I GTSAC 4 cut(s) 254, 1030, 1042, 1511
TspDTI ATGAA 2 cut(s) 596, 1142
TspGWI ACGGA 1 cut(s) 1155
TspMI CCCGGG 1 cut(s) 1208
TspRI CASTG 4 cut(s) 164, 259, 1060, 1205
Van91I CCANNNNNTGG 2 cut(s) 447, 515
VpaK11BI GGWCC 2 cut(s) 530, 956
XagI CCTNNNNNAGG 1 cut(s) 189
XapI RAATTY 4 cut(s) 231, 913, 1103, 1470
XcmI CCANNNNNNNNNTGG 2 cut(s) 453, 1302
XmaI CCCGGG 1 cut(s) 1208
XmiI GTMKAC 2 cut(s) 352, 378
XspI CTAG 5 cut(s) 960, 1146, 1239, 1425, 1434
ZraI GACGTC 1 cut(s) 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.