FvH4_3g08670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016685
Physical Location & Seq
Forward (+)
5063047 .. 5063737
691 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08670.t1

Sequence Viewer

Length: 450 bp
ATGGGAGAAGAAGACACAACATGGGAGCAAAGGATCAATGCCTTGACTCACATCCTCATCAACCCAACAACCACACCACCTCTCCATTCCCAGTTCTTTATCTCCACCCAAATTCCATGCTACCTAAACTGGGAATACCCACCAGTCCTCTGTACCAAATACTCTTCCTCTATTCATCTCAAATGGGGCATCTCCCTCTTCCTCAAAAGGGTCTTCAAATTTGGCCCCCCTGAGATTTCTTGGAGATCCAAGTGCCCATATCAGATCCCTCCACCATTGATCCTGGCTAAAGGAGTAGAAGAAGCTCAGTGGGATCCAGAGCAGAAGAGACTGCAGTTCAGGAAGAGGCTAAGAAGAAAACGCTACGGGGTTGATGTTAATCCTTGGATTCCTTTTCTGATTCCCAATATGTTGTTGTTATCTCTTCTTCTTTGGAACCCATATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.68

Weight (kDa)

9.51

Isoelectric Point (pI)

54.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33855
fragaria_vesca FvH4_3g08670
malus_domestica MD10G1289500.v1.1
prunus_persica Prupe.4G052300_v2.0.a1
pyrus_communis pycom05g28680
rosa_chinensis RchiOBHm_Chr5g0009121
rosa_laevigata RLG00000031631
rosa_multiflora Rmu_sc0005923.1_g000007
rosa_roxburghii Rroxscaffold_1G00066880
rosa_rugosa Rorug04G0441300
rosa_samantha Rh5BG067500 Rh5CG079400 Rh5DG067200
rosa_wichuraiana Rw5G006600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 6 cut(s) 41, 240, 259, 274, 308, 321
AcsI RAATTY 2 cut(s) 111, 218
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 130, 208
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 6 cut(s) 41, 240, 259, 274, 308, 321
AoxI GGCC 1 cut(s) 223
ApoI RAATTY 2 cut(s) 111, 218
AspS9I GGNCC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 257
BamHI GGATCC 1 cut(s) 313
BbsI GAAGAC 2 cut(s) 18, 205
BciT130I CCWGG 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 322
BfmI CTRYAG 1 cut(s) 332
Bme1390I CCNGG 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 3 cut(s) 226, 315, 437
BmrFI CCNGG 1 cut(s) 284
BmrI ACTGGG 2 cut(s) 85, 139
BmsI GCATC 1 cut(s) 198
BmuI ACTGGG 2 cut(s) 85, 139
BpiI GAAGAC 2 cut(s) 18, 205
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 208
Bse1I ACTGG 3 cut(s) 91, 134, 143
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 1 cut(s) 51
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 2 cut(s) 130, 208
BseMII CTCAG 2 cut(s) 222, 320
BseNI ACTGG 3 cut(s) 91, 134, 143
BseSI GKGCMC 1 cut(s) 257
BshFI GGCC 1 cut(s) 225
BslI CCNNNNNNNGG 2 cut(s) 130, 208
BsmAI GTCTC 1 cut(s) 322
BsnI GGCC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 5 cut(s) 33, 245, 264, 279, 313
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 2 cut(s) 223, 319
BspLI GGNNCC 3 cut(s) 226, 315, 437
BspMAI CTGCAG 1 cut(s) 336
BspPI GGATC 6 cut(s) 41, 240, 259, 274, 308, 321
BsrI ACTGG 3 cut(s) 91, 134, 143
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 5 cut(s) 33, 245, 264, 279, 313
BssT1I CCWWGG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 284
Bst6I CTCTTC 5 cut(s) 169, 203, 320, 338, 429
BstDEI CTNAG 3 cut(s) 231, 306, 350
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 5 cut(s) 36, 248, 267, 282, 316
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 5 cut(s) 33, 245, 264, 279, 313
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 332
BstSLI GKGCMC 1 cut(s) 257
BstV2I GAAGAC 2 cut(s) 18, 205
BstX2I RGATCY 3 cut(s) 245, 264, 313
BstYI RGATCY 3 cut(s) 245, 264, 313
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 153
CviAII CATG 2 cut(s) 21, 117
CviJI RGCY 4 cut(s) 225, 287, 305, 349
CviKI_1 RGCY 4 cut(s) 225, 287, 305, 349
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 3 cut(s) 231, 306, 350
DpnI GATC 5 cut(s) 35, 247, 266, 281, 315
DpnII GATC 5 cut(s) 33, 245, 264, 279, 313
Eam1104I CTCTTC 5 cut(s) 169, 203, 320, 338, 429
EarI CTCTTC 5 cut(s) 169, 203, 320, 338, 429
Eco130I CCWWGG 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 2 cut(s) 24, 120
FaiI YATR 5 cut(s) 22, 118, 259, 410, 442
FatI CATG 2 cut(s) 20, 116
FokI GGATG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 225
Hin1II CATG 2 cut(s) 24, 120
HinfI GANTC 3 cut(s) 46, 388, 400
Hpy188I TCNGA 2 cut(s) 264, 399
Hpy188III TCNNGA 2 cut(s) 317, 340
HpyCH4V TGCA 1 cut(s) 334
HpyF3I CTNAG 3 cut(s) 231, 306, 350
Hsp92II CATG 2 cut(s) 24, 120
Kzo9I GATC 5 cut(s) 33, 245, 264, 279, 313
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 8 cut(s) 104, 115, 156, 243, 269, 296, 325, 330
LweI GCATC 1 cut(s) 198
MalI GATC 5 cut(s) 35, 247, 266, 281, 315
MboI GATC 5 cut(s) 33, 245, 264, 279, 313
MflI RGATCY 3 cut(s) 245, 264, 313
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 2 cut(s) 111, 218
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 8 cut(s) 65, 90, 158, 178, 206, 212, 279, 339
MseI TTAA 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
NdeII GATC 5 cut(s) 33, 245, 264, 279, 313
NlaIII CATG 2 cut(s) 24, 120
NlaIV GGNNCC 3 cut(s) 226, 315, 437
PfeI GAWTC 2 cut(s) 388, 400
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 3 cut(s) 226, 315, 437
PspPI GGNCC 1 cut(s) 224
PstI CTGCAG 1 cut(s) 336
PsuI RGATCY 3 cut(s) 245, 264, 313
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 378
Sau3AI GATC 5 cut(s) 33, 245, 264, 279, 313
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 1 cut(s) 257
SetI ASST 3 cut(s) 82, 126, 307
SfaNI GCATC 1 cut(s) 198
SfcI CTRYAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 111, 218
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 383
TasI AATT 2 cut(s) 111, 218
TfiI GAWTC 2 cut(s) 388, 400
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TscAI CASTG 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 1 cut(s) 314
XapI RAATTY 2 cut(s) 111, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.