Rroxscaffold_1G00066880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016685
Physical Location & Seq
Forward (+)
88347505 .. 88347960
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066880.1

Sequence Viewer

Length: 456 bp
ATGGGCGACGAAGACACAACATGGGAGCAAAGGCTCAATGCCTTAACTCACATCCTCATCAACCCAACAACCACACCACCTCTCCATGCCCAGTTCTTCATCTCCACCCAAATTCCATGCTACCTAAACTGGGACTACCCACCAGTCCTCTGTACCAAAGCCCCTTCTTATACTCATCTCAAATGGGGCATCTCTCTCTTCCTCAAAAGGGTCTTCAAACTTGGGCCCCCTGAGACTTCCTGGAGGTCCAAGTGCCCATATCAGATCCCGCCACCATTGATTCTTGCTAAAGGAGTAGAGGAAGCTCAGTGGGATCCAGAGCAGAAGAGACTGTACTTTAGGAAGAGGCTGAGAAGAAAACGCTTTGCGCCTGATGTTAATCCTTGGATTCCTTTTCTAATTCCCAATATGTTGTTGTTATCTCTTCTTCTCTGGAACCCATATCCCGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.84

Weight (kDa)

9.37

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33855
fragaria_vesca FvH4_3g08670
malus_domestica MD10G1289500.v1.1
prunus_persica Prupe.4G052300_v2.0.a1
pyrus_communis pycom05g28680
rosa_chinensis RchiOBHm_Chr5g0009121
rosa_laevigata RLG00000031631
rosa_multiflora Rmu_sc0005923.1_g000007
rosa_roxburghii Rroxscaffold_1G00066880
rosa_rugosa Rorug04G0441300
rosa_samantha Rh5BG067500 Rh5CG079400 Rh5DG067200
rosa_wichuraiana Rw5G006600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 269
AclWI GGATC 3 cut(s) 259, 308, 321
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 2 cut(s) 154, 335
AfiI CCNNNNNNNGG 2 cut(s) 130, 208
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 2 cut(s) 227, 322
AlwI GGATC 3 cut(s) 259, 308, 321
AoxI GGCC 1 cut(s) 224
ApaI GGGCCC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 111
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 3 cut(s) 224, 225, 246
AvaII GGWCC 1 cut(s) 246
BaeGI GKGCMC 2 cut(s) 228, 257
BamHI GGATCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BbsI GAAGAC 2 cut(s) 18, 205
BciT130I CCWGG 1 cut(s) 241
BcoDI GTCTC 2 cut(s) 227, 322
Bme1390I CCNGG 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 3 cut(s) 224, 225, 246
BmiI GGNNCC 4 cut(s) 226, 227, 315, 437
BmrFI CCNGG 1 cut(s) 241
BmrI ACTGGG 2 cut(s) 85, 139
BmsI GCATC 1 cut(s) 198
BmuI ACTGGG 2 cut(s) 85, 139
BpiI GAAGAC 2 cut(s) 18, 205
BpmI CTGGAG 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 208
Bse1I ACTGG 3 cut(s) 91, 134, 143
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 383
BseGI GGATG 1 cut(s) 51
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 2 cut(s) 130, 208
BseMII CTCAG 3 cut(s) 222, 320, 341
BseNI ACTGG 3 cut(s) 91, 134, 143
BseSI GKGCMC 2 cut(s) 228, 257
BshFI GGCC 1 cut(s) 226
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 130, 208
BsmAI GTCTC 2 cut(s) 227, 322
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 226
Bsp120I GGGCCC 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 228, 257
Bsp143I GATC 2 cut(s) 264, 313
BspACI CCGC 1 cut(s) 269
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 3 cut(s) 223, 319, 342
BspLI GGNNCC 4 cut(s) 226, 227, 315, 437
BspPI GGATC 3 cut(s) 259, 308, 321
BsrI ACTGG 3 cut(s) 91, 134, 143
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 2 cut(s) 264, 313
BssT1I CCWWGG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 4 cut(s) 203, 320, 338, 429
BstDEI CTNAG 3 cut(s) 231, 306, 350
BstF5I GGATG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 2 cut(s) 267, 316
BstMAI GTCTC 2 cut(s) 227, 322
BstMBI GATC 2 cut(s) 264, 313
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 239
BstSLI GKGCMC 2 cut(s) 228, 257
BstV2I GAAGAC 2 cut(s) 18, 205
BstX2I RGATCY 2 cut(s) 264, 313
BstYI RGATCY 2 cut(s) 264, 313
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 314
CfoI GCGC 1 cut(s) 370
Cfr13I GGNCC 3 cut(s) 224, 225, 246
Csp6I GTAC 2 cut(s) 153, 334
CviAII CATG 3 cut(s) 21, 86, 117
CviJI RGCY 5 cut(s) 34, 161, 226, 305, 349
CviKI_1 RGCY 5 cut(s) 34, 161, 226, 305, 349
CviQI GTAC 2 cut(s) 153, 334
DdeI CTNAG 3 cut(s) 231, 306, 350
DpnI GATC 2 cut(s) 266, 315
DpnII GATC 2 cut(s) 264, 313
Eam1104I CTCTTC 4 cut(s) 203, 320, 338, 429
EarI CTCTTC 4 cut(s) 203, 320, 338, 429
Eco130I CCWWGG 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 383
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 3 cut(s) 24, 89, 120
FaiI YATR 7 cut(s) 22, 87, 118, 171, 259, 410, 442
FaqI GGGAC 1 cut(s) 146
FatI CATG 3 cut(s) 20, 85, 116
FauI CCCGC 1 cut(s) 276
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 1 cut(s) 228
GlaI GCGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 1 cut(s) 226
HhaI GCGC 1 cut(s) 370
Hin1II CATG 3 cut(s) 24, 89, 120
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HinfI GANTC 2 cut(s) 280, 388
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 3 cut(s) 317, 433, 446
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 1 cut(s) 333
HpyF3I CTNAG 3 cut(s) 231, 306, 350
Hsp92II CATG 3 cut(s) 24, 89, 120
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 2 cut(s) 264, 313
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 9 cut(s) 104, 115, 156, 226, 243, 253, 330, 384, 418
LweI GCATC 1 cut(s) 198
MalI GATC 2 cut(s) 266, 315
MboI GATC 2 cut(s) 264, 313
MboII GAAGA 9 cut(s) 23, 88, 190, 205, 337, 355, 366, 416, 419
MflI RGATCY 2 cut(s) 264, 313
MhlI GDGCHC 2 cut(s) 228, 257
MluCI AATT 3 cut(s) 111, 399, 451
MnlI CCTC 7 cut(s) 65, 90, 158, 212, 237, 292, 339
MseI TTAA 2 cut(s) 44, 378
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
NdeII GATC 2 cut(s) 264, 313
NlaIII CATG 3 cut(s) 24, 89, 120
NlaIV GGNNCC 4 cut(s) 226, 227, 315, 437
PfeI GAWTC 2 cut(s) 280, 388
PfoI TCCNGGA 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 4 cut(s) 226, 227, 315, 437
PspOMI GGGCCC 1 cut(s) 224
PspPI GGNCC 3 cut(s) 224, 225, 246
PsuI RGATCY 2 cut(s) 264, 313
RsaI GTAC 2 cut(s) 154, 335
RsaNI GTAC 2 cut(s) 153, 334
SaqAI TTAA 2 cut(s) 44, 378
Sau3AI GATC 2 cut(s) 264, 313
Sau96I GGNCC 3 cut(s) 224, 225, 246
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 2 cut(s) 228, 257
SetI ASST 4 cut(s) 82, 126, 248, 307
SfaNI GCATC 1 cut(s) 198
SinI GGWCC 1 cut(s) 246
Sse9I AATT 3 cut(s) 111, 399, 451
SsiI CCGC 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 1 cut(s) 333
TasI AATT 3 cut(s) 111, 399, 451
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 2 cut(s) 280, 388
Tru1I TTAA 2 cut(s) 44, 378
Tru9I TTAA 2 cut(s) 44, 378
TscAI CASTG 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 88
TspRI CASTG 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.