MD10G1289500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016685
Physical Location & Seq
Forward (+)
37849190 .. 37849642
453 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1289500.v1.1.491

Sequence Viewer

Length: 453 bp
ATGGAGGACACCACATGGGAGCAAAAACTCAATGCCCTAACCCACATCCTAATCAACCCTACAACCGCACCATCTCCCCACTCCCAGCTCTTCATCGCCACCCAAATCCCCTGCTACCTCAACTGGGACTACCCTCCAATCCTCTGCACCAAATCCGCCTTCCCTCCAATCCACCTCCAATTTGCCATCTCCCTCTTCCTCAAAAGGGTCTCCAGATTAGGGCTCCCCCAGACCTCCTGGAGGTCCAAGTGCCCTTACCAGCTGCCCCCGCCATTGGTCCTTGCAAAGGGCGTAGAGGAAGCTCAGTGGGGTGAGGAGCAGATGATAGAAAGGTTTAGGAAGAGGATGAGGAGAAAACGACTTGGTAGTAGTGTGAATCCTTTGCTTCCTATTTTGGTTCCCAATATGTTGTTGTTTTTTCTTCTTCTTTGGGACCCTAGTATCGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.39

Weight (kDa)

9.37

Isoelectric Point (pI)

68.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33855
fragaria_vesca FvH4_3g08670
malus_domestica MD10G1289500.v1.1
prunus_persica Prupe.4G052300_v2.0.a1
pyrus_communis pycom05g28680
rosa_chinensis RchiOBHm_Chr5g0009121
rosa_laevigata RLG00000031631
rosa_multiflora Rmu_sc0005923.1_g000007
rosa_roxburghii Rroxscaffold_1G00066880
rosa_rugosa Rorug04G0441300
rosa_samantha Rh5BG067500 Rh5CG079400 Rh5DG067200
rosa_wichuraiana Rw5G006600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 66, 156, 269
AfiI CCNNNNNNNGG 6 cut(s) 124, 205, 219, 240, 274, 286
AjnI CCWGG 1 cut(s) 236
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 3 cut(s) 88, 262, 302
AluI AGCT 3 cut(s) 88, 262, 302
Alw26I GTCTC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 262
AspS9I GGNCC 3 cut(s) 243, 277, 433
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 3 cut(s) 243, 277, 433
BaeGI GKGCMC 1 cut(s) 254
BaeI ACNNNNGTAYC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 249
BccI CCATC 2 cut(s) 79, 194
BciT130I CCWGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 438
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 3 cut(s) 243, 277, 433
BmgT120I GGNCC 3 cut(s) 243, 277, 433
BmiI GGNNCC 4 cut(s) 224, 399, 434, 435
BmrFI CCNGG 1 cut(s) 238
BmrI ACTGGG 1 cut(s) 133
BmuI ACTGGG 1 cut(s) 133
BpmI CTGGAG 2 cut(s) 196, 259
BsaI GGTCTC 1 cut(s) 214
Bsc4I CCNNNNNNNGG 6 cut(s) 124, 205, 219, 240, 274, 286
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 238
BseGI GGATG 2 cut(s) 45, 351
BseLI CCNNNNNNNGG 6 cut(s) 124, 205, 219, 240, 274, 286
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 2 cut(s) 329, 364
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 1 cut(s) 249
BseYI CCCAGC 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 130
BslFI GGGAC 2 cut(s) 140, 446
BslI CCNNNNNNNGG 6 cut(s) 124, 205, 219, 240, 274, 286
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 2 cut(s) 140, 446
Bso31I GGTCTC 1 cut(s) 214
Bsp1286I GDGCHC 2 cut(s) 225, 254
BspACI CCGC 3 cut(s) 66, 156, 269
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 4 cut(s) 224, 399, 434, 435
BspQI GCTCTTC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 238
Bst6I CTCTTC 3 cut(s) 95, 200, 335
BstDEI CTNAG 1 cut(s) 303
BstENI CCTNNNNNAGG 2 cut(s) 238, 284
BstF5I GGATG 2 cut(s) 45, 351
BstMAI GTCTC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 79
BtsCI GGATG 2 cut(s) 45, 351
BtsIMutI CAGTG 1 cut(s) 311
Cfr13I GGNCC 3 cut(s) 243, 277, 433
CviAII CATG 1 cut(s) 15
CviJI RGCY 4 cut(s) 88, 223, 262, 302
CviKI_1 RGCY 4 cut(s) 88, 223, 262, 302
DdeI CTNAG 1 cut(s) 303
Eam1104I CTCTTC 3 cut(s) 95, 200, 335
EarI CTCTTC 3 cut(s) 95, 200, 335
EciI GGCGGA 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 214
Eco47I GGWCC 3 cut(s) 243, 277, 433
EcoNI CCTNNNNNAGG 2 cut(s) 238, 284
EcoO109I RGGNCCY 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 1 cut(s) 18
FaiI YATR 2 cut(s) 16, 407
FaqI GGGAC 2 cut(s) 140, 446
FatI CATG 1 cut(s) 14
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 2 cut(s) 32, 358
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 438
GluI GCNGC 1 cut(s) 263
GsaI CCCAGC 1 cut(s) 88
GsuI CTGGAG 2 cut(s) 196, 259
Hin1II CATG 1 cut(s) 18
HinfI GANTC 1 cut(s) 376
HphI GGTGA 1 cut(s) 323
Hpy188III TCNNGA 1 cut(s) 213
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 147, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 1 cut(s) 18
KflI GGGWCCC 1 cut(s) 433
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 3 cut(s) 19, 228, 316
LpnPI CCDG 8 cut(s) 98, 109, 124, 223, 226, 242, 250, 272
Lsp1109I GCAGC 1 cut(s) 249
MaeI CTAG 1 cut(s) 438
MboII GAAGA 5 cut(s) 82, 187, 352, 413, 416
MhlI GDGCHC 2 cut(s) 225, 254
MluCI AATT 2 cut(s) 179, 448
MspA1I CMGCKG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 268
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 4 cut(s) 224, 399, 434, 435
PciSI GCTCTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 376
PfoI TCCNGGA 1 cut(s) 236
PkrI GCNGC 1 cut(s) 264
PpuMI RGGWCCY 1 cut(s) 433
Psp5II RGGWCCY 1 cut(s) 433
Psp6I CCWGG 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 4 cut(s) 224, 399, 434, 435
PspPI GGNCC 3 cut(s) 243, 277, 433
PspPPI RGGWCCY 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 262
SapI GCTCTTC 1 cut(s) 95
SatI GCNGC 1 cut(s) 263
Sau96I GGNCC 3 cut(s) 243, 277, 433
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 2 cut(s) 225, 254
SetI ASST 8 cut(s) 90, 120, 177, 236, 245, 264, 304, 335
SinI GGWCC 3 cut(s) 243, 277, 433
Sse9I AATT 2 cut(s) 179, 448
SsiI CCGC 3 cut(s) 66, 156, 269
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 1 cut(s) 236
TaqI TCGA 1 cut(s) 444
TasI AATT 2 cut(s) 179, 448
TfiI GAWTC 1 cut(s) 376
TscAI CASTG 1 cut(s) 311
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 82
TspRI CASTG 1 cut(s) 311
VpaK11BI GGWCC 3 cut(s) 243, 277, 433
XagI CCTNNNNNAGG 2 cut(s) 238, 284
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.