Rw5G006600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0016685
Physical Location & Seq
Reverse (-)
6781522 .. 6782111
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G006600.1

Sequence Viewer

Length: 480 bp
ATGTTGAGAGATAAGCACAAAAGAATGGGAGACGAAGACACAACATGGGAGCAAAGGCTCAATGCCGTAACTCACATCCTCATCAACCCAACAACCACACCACCTCTCCATGCCCAGTTCTTCATCTCCACCCAAATTCCATGCTACCTAAACTGGGACTACCCACCAGTCCTCTGTACCAAATCCCCTTCTTATACTCATCTCAAATGGGGCATCTCTCTCTTCCTCAAAAGGGTCTTCAAACTTGGGCCCCCTGAGACTTCCTGGAGGTCCAAGTGCCCATATCAGATCCCTCCACCATTAATTCTTGCTAAAGGAGTAGAGGAAGCTCAGTGGGATCCAGCGCAGAAGAGACTGTACTTTAGGAAGAGGCTGAGAAGAAAACGCTTTGCGCCTGATGTTAATCCTTGGATTCCTTTTCTAATTCCCAATATGTTGTTGTTATCTCTTCTTCTCTGGAACCCATATCCCGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.85

Weight (kDa)

9.78

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33855
fragaria_vesca FvH4_3g08670
malus_domestica MD10G1289500.v1.1
prunus_persica Prupe.4G052300_v2.0.a1
pyrus_communis pycom05g28680
rosa_chinensis RchiOBHm_Chr5g0009121
rosa_laevigata RLG00000031631
rosa_multiflora Rmu_sc0005923.1_g000007
rosa_roxburghii Rroxscaffold_1G00066880
rosa_rugosa Rorug04G0441300
rosa_samantha Rh5BG067500 Rh5CG079400 Rh5DG067200
rosa_wichuraiana Rw5G006600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 283, 332, 345
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 2 cut(s) 178, 359
AfiI CCNNNNNNNGG 2 cut(s) 154, 232
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
Alw26I GTCTC 3 cut(s) 24, 251, 346
AlwI GGATC 3 cut(s) 283, 332, 345
AoxI GGCC 1 cut(s) 248
ApaI GGGCCC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 135
AseI ATTAAT 1 cut(s) 302
AspLEI GCGC 2 cut(s) 346, 394
AspS9I GGNCC 3 cut(s) 248, 249, 270
AvaII GGWCC 1 cut(s) 270
BaeGI GKGCMC 2 cut(s) 252, 281
BamHI GGATCC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 252
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BbsI GAAGAC 2 cut(s) 42, 229
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 265
BcoDI GTCTC 3 cut(s) 24, 251, 346
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 3 cut(s) 248, 249, 270
BmiI GGNNCC 4 cut(s) 250, 251, 339, 461
BmrFI CCNGG 1 cut(s) 265
BmrI ACTGGG 2 cut(s) 109, 163
BmsI GCATC 1 cut(s) 222
BmuI ACTGGG 2 cut(s) 109, 163
BpiI GAAGAC 2 cut(s) 42, 229
BpmI CTGGAG 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 407
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 232
Bse1I ACTGG 3 cut(s) 115, 158, 167
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 2 cut(s) 154, 232
BseMII CTCAG 3 cut(s) 246, 344, 365
BseNI ACTGG 3 cut(s) 115, 158, 167
BseSI GKGCMC 2 cut(s) 252, 281
BshFI GGCC 1 cut(s) 250
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 154, 232
BsmAI GTCTC 3 cut(s) 24, 251, 346
BsmBI CGTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 250
Bsp120I GGGCCC 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 252, 281
Bsp143I GATC 2 cut(s) 288, 337
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 3 cut(s) 247, 343, 366
BspLI GGNNCC 4 cut(s) 250, 251, 339, 461
BspPI GGATC 3 cut(s) 283, 332, 345
BsrI ACTGG 3 cut(s) 115, 158, 167
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 2 cut(s) 288, 337
BssT1I CCWWGG 1 cut(s) 407
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 4 cut(s) 227, 344, 362, 453
BstDEI CTNAG 3 cut(s) 255, 330, 374
BstF5I GGATG 1 cut(s) 75
BstHHI GCGC 2 cut(s) 346, 394
BstKTI GATC 2 cut(s) 291, 340
BstMAI GTCTC 3 cut(s) 24, 251, 346
BstMBI GATC 2 cut(s) 288, 337
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 263
BstSLI GKGCMC 2 cut(s) 252, 281
BstV2I GAAGAC 2 cut(s) 42, 229
BstX2I RGATCY 2 cut(s) 288, 337
BstYI RGATCY 2 cut(s) 288, 337
BsuRI GGCC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 338
CfoI GCGC 2 cut(s) 346, 394
Cfr13I GGNCC 3 cut(s) 248, 249, 270
Csp6I GTAC 2 cut(s) 177, 358
CviAII CATG 3 cut(s) 45, 110, 141
CviJI RGCY 4 cut(s) 58, 250, 329, 373
CviKI_1 RGCY 4 cut(s) 58, 250, 329, 373
CviQI GTAC 2 cut(s) 177, 358
DdeI CTNAG 3 cut(s) 255, 330, 374
DpnI GATC 2 cut(s) 290, 339
DpnII GATC 2 cut(s) 288, 337
Eam1104I CTCTTC 4 cut(s) 227, 344, 362, 453
EarI CTCTTC 4 cut(s) 227, 344, 362, 453
Eco130I CCWWGG 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 270
EcoO109I RGGNCCY 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 407
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 407
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 3 cut(s) 48, 113, 144
FaiI YATR 7 cut(s) 46, 111, 142, 195, 283, 434, 466
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 44, 109, 140
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 252
GlaI GCGC 2 cut(s) 345, 393
GsuI CTGGAG 1 cut(s) 286
HaeIII GGCC 1 cut(s) 250
HhaI GCGC 2 cut(s) 346, 394
Hin1II CATG 3 cut(s) 48, 113, 144
Hin6I GCGC 2 cut(s) 344, 392
HinP1I GCGC 2 cut(s) 344, 392
HinfI GANTC 1 cut(s) 412
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 2 cut(s) 457, 470
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 357
HpyF3I CTNAG 3 cut(s) 255, 330, 374
Hsp92II CATG 3 cut(s) 48, 113, 144
HspAI GCGC 2 cut(s) 344, 392
Kzo9I GATC 2 cut(s) 288, 337
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 9 cut(s) 128, 139, 180, 250, 267, 277, 354, 408, 442
LweI GCATC 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 290, 339
MboI GATC 2 cut(s) 288, 337
MboII GAAGA 9 cut(s) 47, 112, 214, 229, 361, 379, 390, 440, 443
MflI RGATCY 2 cut(s) 288, 337
MhlI GDGCHC 2 cut(s) 252, 281
MluCI AATT 4 cut(s) 135, 303, 423, 475
MnlI CCTC 8 cut(s) 89, 114, 182, 236, 261, 303, 316, 363
MseI TTAA 2 cut(s) 302, 402
MspR9I CCNGG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 265
NdeII GATC 2 cut(s) 288, 337
NlaIII CATG 3 cut(s) 48, 113, 144
NlaIV GGNNCC 4 cut(s) 250, 251, 339, 461
PfeI GAWTC 1 cut(s) 412
PfoI TCCNGGA 1 cut(s) 263
PshBI ATTAAT 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 4 cut(s) 250, 251, 339, 461
PspOMI GGGCCC 1 cut(s) 248
PspPI GGNCC 3 cut(s) 248, 249, 270
PsuI RGATCY 2 cut(s) 288, 337
RsaI GTAC 2 cut(s) 178, 359
RsaNI GTAC 2 cut(s) 177, 358
SaqAI TTAA 2 cut(s) 302, 402
Sau3AI GATC 2 cut(s) 288, 337
Sau96I GGNCC 3 cut(s) 248, 249, 270
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 2 cut(s) 252, 281
SetI ASST 4 cut(s) 106, 150, 272, 331
SfaNI GCATC 1 cut(s) 222
SinI GGWCC 1 cut(s) 270
Sse9I AATT 4 cut(s) 135, 303, 423, 475
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 357
TasI AATT 4 cut(s) 135, 303, 423, 475
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 2 cut(s) 302, 402
Tru9I TTAA 2 cut(s) 302, 402
TscAI CASTG 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 112
TspRI CASTG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 270
VspI ATTAAT 1 cut(s) 302
XapI RAATTY 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.