Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016685

Physical Location & Seq

Genomic Coordinates Reverse (-)

5545413 .. 5545922

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG067500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAATGAAAATGTGAGCACCCTCAACCTCATGTTGAGAGATAAGCACAAAAGAATGGGAGACGAAGACACGACATGGGAGCAAAGGCTCAATGCCTTAACTCACATCCTCATCAACCCAACAACCACACCACCTCTCCATGCCCAGTTCTTCATCTCCACCCAAATTCCATGCTACCTAAACTGGGACTACCCACCAGTCCTCTGTACCAAATCCCCTTCTTATACTCATCTCAAATGGGGCATCTCTCTCTTCCTCAAAAGGGTCTTCAAACTTGGGCCCCCTGAGACTTCCTGGAGGTCCAAGTGCCCTTATCAGATCCCTCCACCATTGATTCTTGCTAAAGGAGTAGAGGAAGCTCAGTGGGATCCAGAGCAGAAGAGACTCTACTTTAGGAAGAGGCTGAGAAGAAAACGCTTTGCGCCTGATGTTAATCCTTGGATTCCTTTTCTAATTCCCAATATGTTGTTGTTATCTCTTCTTCTCTGGAACCCATATCCCGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

20.04

Weight (kDa)

9.57

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33855
fragaria_vesca	FvH4_3g08670
malus_domestica	MD10G1289500.v1.1
prunus_persica	Prupe.4G052300_v2.0.a1
pyrus_communis	pycom05g28680
rosa_chinensis	RchiOBHm_Chr5g0009121
rosa_laevigata	RLG00000031631
rosa_multiflora	Rmu_sc0005923.1_g000007
rosa_roxburghii	Rroxscaffold_1G00066880
rosa_rugosa	Rorug04G0441300
rosa_samantha	Rh5BG067500 Rh5CG079400 Rh5DG067200
rosa_wichuraiana	Rw5G006600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	313, 362, 375
AcsI	RAATTY	1 cut(s)	165
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	184, 262
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	3 cut(s)	54, 281, 376
AlwI	GGATC	3 cut(s)	313, 362, 375
AoxI	GGCC	1 cut(s)	278
ApaI	GGGCCC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	3 cut(s)	278, 279, 300
AvaII	GGWCC	1 cut(s)	300
BaeGI	GKGCMC	2 cut(s)	282, 311
BamHI	GGATCC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
BbsI	GAAGAC	2 cut(s)	72, 259
Bbv12I	GWGCWC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	295
BcoDI	GTCTC	3 cut(s)	54, 281, 376
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	300
BmgT120I	GGNCC	3 cut(s)	278, 279, 300
BmiI	GGNNCC	4 cut(s)	280, 281, 369, 491
BmrFI	CCNGG	1 cut(s)	295
BmrI	ACTGGG	2 cut(s)	139, 193
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	2 cut(s)	139, 193
BpiI	GAAGAC	2 cut(s)	72, 259
BpmI	CTGGAG	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	437
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 262
Bse1I	ACTGG	3 cut(s)	145, 188, 197
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	1 cut(s)	105
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	184, 262
BseMII	CTCAG	3 cut(s)	276, 374, 395
BseNI	ACTGG	3 cut(s)	145, 188, 197
BseSI	GKGCMC	2 cut(s)	282, 311
BshFI	GGCC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	184, 262
BsmAI	GTCTC	3 cut(s)	54, 281, 376
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	280
Bsp120I	GGGCCC	1 cut(s)	278
Bsp1286I	GDGCHC	3 cut(s)	20, 282, 311
Bsp143I	GATC	2 cut(s)	318, 367
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	3 cut(s)	277, 373, 396
BspLI	GGNNCC	4 cut(s)	280, 281, 369, 491
BspPI	GGATC	3 cut(s)	313, 362, 375
BsrI	ACTGG	3 cut(s)	145, 188, 197
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	2 cut(s)	318, 367
BssT1I	CCWWGG	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	295
Bst6I	CTCTTC	4 cut(s)	257, 374, 392, 483
BstDEI	CTNAG	3 cut(s)	285, 360, 404
BstF5I	GGATG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	2 cut(s)	321, 370
BstMAI	GTCTC	3 cut(s)	54, 281, 376
BstMBI	GATC	2 cut(s)	318, 367
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstSLI	GKGCMC	2 cut(s)	282, 311
BstV2I	GAAGAC	2 cut(s)	72, 259
BstX2I	RGATCY	2 cut(s)	318, 367
BstYI	RGATCY	2 cut(s)	318, 367
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	368
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	3 cut(s)	278, 279, 300
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	4 cut(s)	31, 75, 140, 171
CviJI	RGCY	4 cut(s)	88, 280, 359, 403
CviKI_1	RGCY	4 cut(s)	88, 280, 359, 403
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	3 cut(s)	285, 360, 404
DpnI	GATC	2 cut(s)	320, 369
DpnII	GATC	2 cut(s)	318, 367
Eam1104I	CTCTTC	4 cut(s)	257, 374, 392, 483
EarI	CTCTTC	4 cut(s)	257, 374, 392, 483
Eco130I	CCWWGG	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	437
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	4 cut(s)	34, 78, 143, 174
FaiI	YATR	7 cut(s)	32, 76, 141, 172, 225, 464, 496
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	4 cut(s)	30, 74, 139, 170
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	282
GlaI	GCGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	4 cut(s)	34, 78, 143, 174
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HinfI	GANTC	3 cut(s)	334, 384, 442
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	3 cut(s)	371, 487, 500
HpyAV	CCTTC	1 cut(s)	228
HpyF3I	CTNAG	3 cut(s)	285, 360, 404
Hsp92II	CATG	4 cut(s)	34, 78, 143, 174
HspAI	GCGC	1 cut(s)	422
Kzo9I	GATC	2 cut(s)	318, 367
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	9 cut(s)	158, 169, 210, 280, 297, 307, 384, 438, 472
LweI	GCATC	1 cut(s)	252
MalI	GATC	2 cut(s)	320, 369
MboI	GATC	2 cut(s)	318, 367
MboII	GAAGA	9 cut(s)	77, 142, 244, 259, 391, 409, 420, 470, 473
MflI	RGATCY	2 cut(s)	318, 367
MhlI	GDGCHC	3 cut(s)	20, 282, 311
MluCI	AATT	3 cut(s)	165, 453, 505
MlyI	GAGTC	1 cut(s)	378
MseI	TTAA	2 cut(s)	98, 432
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
NdeII	GATC	2 cut(s)	318, 367
NlaIII	CATG	4 cut(s)	34, 78, 143, 174
NlaIV	GGNNCC	4 cut(s)	280, 281, 369, 491
PfeI	GAWTC	2 cut(s)	334, 442
PfoI	TCCNGGA	1 cut(s)	293
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	4 cut(s)	280, 281, 369, 491
PspOMI	GGGCCC	1 cut(s)	278
PspPI	GGNCC	3 cut(s)	278, 279, 300
PsuI	RGATCY	2 cut(s)	318, 367
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	98, 432
Sau3AI	GATC	2 cut(s)	318, 367
Sau96I	GGNCC	3 cut(s)	278, 279, 300
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	3 cut(s)	20, 282, 311
SetI	ASST	5 cut(s)	30, 136, 180, 302, 361
SfaNI	GCATC	1 cut(s)	252
SinI	GGWCC	1 cut(s)	300
Sse9I	AATT	3 cut(s)	165, 453, 505
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	437
TasI	AATT	3 cut(s)	165, 453, 505
TfiI	GAWTC	2 cut(s)	334, 442
Tru1I	TTAA	2 cut(s)	98, 432
Tru9I	TTAA	2 cut(s)	98, 432
TscAI	CASTG	1 cut(s)	368
TspDTI	ATGAA	3 cut(s)	17, 21, 142
TspRI	CASTG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.