Rorug04G0441300

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
59802745 .. 59803041
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0441300.1

Sequence Viewer

Length: 297 bp
ATGGCGGCTCTGATCCATCGTCTTCCACCTGTGAAATCGACCAGAACAACCTACTACGACCACTCAAACGATCAATGGTTCAAGGAGAGGATCAGTAGTAATACAATGACTTCTTCAGTCCTTCCTACCAATGTATTGGATTTCCGTGACGGCGGTGTTTTCCCGGAGATTCATAAACCTCAGTACCCTCTTGGCATGGGCAAGGAGGACACCAAGTCCTCAAAGCCCCAATCCAAAACTCTTCCGGTTTCTTTTGATGCGTATGGAAACATAGCCTATGATGCCATTGTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.03

Weight (kDa)

8.93

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016685)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33855
fragaria_vesca FvH4_3g08670
malus_domestica MD10G1289500.v1.1
prunus_persica Prupe.4G052300_v2.0.a1
pyrus_communis pycom05g28680
rosa_chinensis RchiOBHm_Chr5g0009121
rosa_laevigata RLG00000031631
rosa_multiflora Rmu_sc0005923.1_g000007
rosa_roxburghii Rroxscaffold_1G00066880
rosa_rugosa Rorug04G0441300
rosa_samantha Rh5BG067500 Rh5CG079400 Rh5DG067200
rosa_wichuraiana Rw5G006600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 153
AclWI GGATC 2 cut(s) 7, 98
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 82
AhdI GACNNNNNGTC 1 cut(s) 214
AlwI GGATC 2 cut(s) 7, 98
AsuC2I CCSGG 1 cut(s) 164
BaeI ACNNNNGTAYC 2 cut(s) 167, 200
BbsI GAAGAC 1 cut(s) 14
BccI CCATC 1 cut(s) 24
BceAI ACGGC 1 cut(s) 166
BcnI CCSGG 1 cut(s) 164
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 164
BmeRI GACNNNNNGTC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 2 cut(s) 247, 271
BpiI GAAGAC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 244
BseMII CTCAG 1 cut(s) 194
BsiSI CCGG 2 cut(s) 164, 245
Bsp143I GATC 3 cut(s) 12, 70, 90
BspACI CCGC 2 cut(s) 5, 153
BspCNI CTCAG 1 cut(s) 193
BspPI GGATC 2 cut(s) 7, 98
BssMI GATC 3 cut(s) 12, 70, 90
Bst6I CTCTTC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 180
BstKTI GATC 3 cut(s) 15, 73, 93
BstMBI GATC 3 cut(s) 12, 70, 90
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 136
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 196
CviJI RGCY 3 cut(s) 8, 226, 275
CviKI_1 RGCY 3 cut(s) 8, 226, 275
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 180
DpnI GATC 3 cut(s) 14, 72, 92
DpnII GATC 3 cut(s) 12, 70, 90
DriI GACNNNNNGTC 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 246
Eam1105I GACNNNNNGTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 99
FaeI CATG 1 cut(s) 199
FaiI YATR 5 cut(s) 174, 197, 264, 272, 279
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HapII CCGG 2 cut(s) 164, 245
Hin1II CATG 1 cut(s) 199
HinfI GANTC 1 cut(s) 169
HpaII CCGG 2 cut(s) 164, 245
Hpy188I TCNGA 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 3 cut(s) 12, 70, 90
LpnPI CCDG 4 cut(s) 42, 55, 177, 258
LweI GCATC 2 cut(s) 247, 271
MaeIII GTNAC 1 cut(s) 146
MalI GATC 3 cut(s) 14, 72, 92
MboI GATC 3 cut(s) 12, 70, 90
MboII GAAGA 3 cut(s) 14, 105, 233
MnlI CCTC 5 cut(s) 81, 189, 198, 199, 229
MseI TTAA 1 cut(s) 291
MspI CCGG 2 cut(s) 164, 245
MspR9I CCNGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 164
NdeII GATC 3 cut(s) 12, 70, 90
NlaIII CATG 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 169
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 1 cut(s) 7
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 12, 70, 90
ScrFI CCNGG 1 cut(s) 164
SetI ASST 3 cut(s) 31, 53, 181
SfaNI GCATC 2 cut(s) 247, 271
SsiI CCGC 2 cut(s) 5, 153
StyD4I CCNGG 1 cut(s) 162
TaqI TCGA 1 cut(s) 38
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.