FvH4_3g08820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018000
Physical Location & Seq
Reverse (-)
5154124 .. 5154645
522 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08820.t1

Sequence Viewer

Length: 522 bp
ATGGCATCCCGTCAAAACAAGATTTCTATAGATGTTGCAGCTGATAAGAGTTCAACTGATTCCTTTTCATTTGCTGGCCTTGTGTGCATTCAGGACCAGCAAGCCAAGTCACTTCAATGTAACAAAGCCAATCGAATTCACAAACAAAGCACAGAGTTTGAGTTTAGCACTGTAGAAGAGTCCTTTGTTTGTGATCCAATCAAGCATTCCCCAGCTGACCTGTTAATCTCAAACGGTCAGATTGTACCACAACCGATCAAACTTCAACCAACACAGCATACTGTCAGCAAGCAGCAACGCAGGAAAGCTTCAGTAAGAGCAACCAGTACCAGTGGCACCCAAGCATCTGCAAAACCATATCCAGAGCATACTAACCAAGACAAGGAGCATGCTGTGCAAAGCTCATGGTTTGGCCAGAAATTATTCAAGTCATTTTTCTTCCCTTGCAAGGAAACCCAAGCTGTTAAGCCAGCCCGGAGAGCAAATAGAATACCAAGCAAAGGGGAAGCTATATTGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.22

Weight (kDa)

9.59

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018000)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08820
prunus_persica Prupe.4G050900_v2.0.a1
pyrus_communis pycom10g24350
rosa_laevigata RLG00000031618
rosa_multiflora Rmu_sc0004677.1_g000019
rosa_roxburghii Rroxscaffold_1G00067080
rosa_rugosa Rorug04G0440400
rosa_samantha Rh5AG069100 Rh5BG065900 Rh5CG077100 Rh5DG064900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 2 cut(s) 246, 328
AfiI CCNNNNNNNGG 3 cut(s) 382, 448, 500
AgsI TTSAA 4 cut(s) 54, 116, 266, 427
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AluBI AGCT 6 cut(s) 41, 215, 308, 402, 461, 509
AluI AGCT 6 cut(s) 41, 215, 308, 402, 461, 509
AlwI GGATC 1 cut(s) 188
AoxI GGCC 2 cut(s) 76, 412
ApeKI GCWGC 2 cut(s) 38, 292
ApoI RAATTY 1 cut(s) 135
Asp700I GAANNNNTTC 1 cut(s) 422
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 475
AvaII GGWCC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 414
BanI GGYRCC 1 cut(s) 335
BbvI GCAGC 2 cut(s) 50, 304
BcnI CCSGG 1 cut(s) 475
BfmI CTRYAG 2 cut(s) 27, 171
BisI GCNGC 2 cut(s) 39, 293
BlsI GCNGC 2 cut(s) 40, 294
Bme1390I CCNGG 1 cut(s) 475
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 475
BmsI GCATC 2 cut(s) 14, 353
BpuMI CCSGG 1 cut(s) 475
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 448, 500
Bse1I ACTGG 2 cut(s) 324, 330
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 3 cut(s) 382, 448, 500
BseNI ACTGG 2 cut(s) 324, 330
BseXI GCAGC 2 cut(s) 50, 304
BseYI CCCAGC 1 cut(s) 211
BshFI GGCC 2 cut(s) 78, 414
BshNI GGYRCC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 475
BslI CCNNNNNNNGG 3 cut(s) 382, 448, 500
BsmI GAATGC 2 cut(s) 87, 205
BsnI GGCC 2 cut(s) 78, 414
Bsp143I GATC 2 cut(s) 193, 255
BspANI GGCC 2 cut(s) 78, 414
BspLI GGNNCC 1 cut(s) 337
BspPI GGATC 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 335
BsrI ACTGG 2 cut(s) 324, 330
BssMI GATC 2 cut(s) 193, 255
Bst4CI ACNGT 3 cut(s) 172, 236, 283
Bst6I CTCTTC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 394
BstC8I GCNNGC 5 cut(s) 76, 102, 290, 390, 471
BstF5I GGATG 1 cut(s) 5
BstKTI GATC 2 cut(s) 196, 258
BstMBI GATC 2 cut(s) 193, 255
BstMWI GCNNNNNNNGC 3 cut(s) 84, 394, 479
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 473
BstSFI CTRYAG 2 cut(s) 27, 171
BstV1I GCAGC 2 cut(s) 50, 304
BsuRI GGCC 2 cut(s) 78, 414
BtsCI GGATG 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 168, 337
Cac8I GCNNGC 5 cut(s) 76, 102, 290, 390, 471
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 245, 327
CviAII CATG 3 cut(s) 389, 405, 519
CviQI GTAC 2 cut(s) 245, 327
DpnI GATC 2 cut(s) 195, 257
DpnII GATC 2 cut(s) 193, 255
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 135
FaeI CATG 3 cut(s) 392, 408, 522
FaiI YATR 8 cut(s) 29, 279, 358, 369, 390, 406, 512, 520
FatI CATG 3 cut(s) 388, 404, 518
Fnu4HI GCNGC 2 cut(s) 39, 293
Fsp4HI GCNGC 2 cut(s) 39, 293
GluI GCNGC 2 cut(s) 39, 293
GsaI CCCAGC 1 cut(s) 215
HaeIII GGCC 2 cut(s) 78, 414
HapII CCGG 1 cut(s) 475
Hin1II CATG 3 cut(s) 392, 408, 522
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 2 cut(s) 59, 179
HpaII CCGG 1 cut(s) 475
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 92, 362
HpyCH4III ACNGT 3 cut(s) 172, 236, 283
HpyCH4V TGCA 5 cut(s) 38, 87, 350, 397, 447
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 394, 479
Hsp92II CATG 3 cut(s) 392, 408, 522
Kzo9I GATC 2 cut(s) 193, 255
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 2 cut(s) 50, 304
LweI GCATC 2 cut(s) 14, 353
MaeIII GTNAC 2 cut(s) 108, 119
MalI GATC 2 cut(s) 195, 257
MboI GATC 2 cut(s) 193, 255
MboII GAAGA 2 cut(s) 188, 430
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 2 cut(s) 135, 419
MluNI TGGCCA 1 cut(s) 414
MlyI GAGTC 1 cut(s) 188
Mox20I TGGCCA 1 cut(s) 414
MroXI GAANNNNTTC 1 cut(s) 422
MscI TGGCCA 1 cut(s) 414
MseI TTAA 2 cut(s) 224, 465
MslI CAYNNNNRTG 1 cut(s) 115
Msp20I TGGCCA 1 cut(s) 414
MspA1I CMGCKG 2 cut(s) 41, 215
MspI CCGG 1 cut(s) 475
MspR9I CCNGG 1 cut(s) 475
Mva1269I GAATGC 2 cut(s) 87, 205
MwoI GCNNNNNNNGC 3 cut(s) 84, 394, 479
NciI CCSGG 1 cut(s) 475
NdeII GATC 2 cut(s) 193, 255
NlaIII CATG 3 cut(s) 392, 408, 522
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 108
NspI RCATGY 1 cut(s) 392
PaeI GCATGC 1 cut(s) 392
PctI GAATGC 2 cut(s) 87, 205
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 2 cut(s) 40, 294
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 94
PvuII CAGCTG 2 cut(s) 41, 215
RsaI GTAC 2 cut(s) 246, 328
RsaNI GTAC 2 cut(s) 245, 327
RseI CAYNNNNRTG 1 cut(s) 115
SaqAI TTAA 2 cut(s) 224, 465
SatI GCNGC 2 cut(s) 39, 293
Sau3AI GATC 2 cut(s) 193, 255
Sau96I GGNCC 1 cut(s) 94
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 475
SetI ASST 7 cut(s) 43, 217, 222, 310, 404, 463, 511
SfaNI GCATC 2 cut(s) 14, 353
SfcI CTRYAG 2 cut(s) 27, 171
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 115
SphI GCATGC 1 cut(s) 392
Sse9I AATT 2 cut(s) 135, 419
StyD4I CCNGG 1 cut(s) 473
TaaI ACNGT 3 cut(s) 172, 236, 283
TaqI TCGA 1 cut(s) 133
TasI AATT 2 cut(s) 135, 419
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 224, 465
Tru9I TTAA 2 cut(s) 224, 465
TscAI CASTG 2 cut(s) 175, 337
TseFI GTSAC 1 cut(s) 108
TseI GCWGC 2 cut(s) 38, 292
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 2 cut(s) 175, 337
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.