RLG00000031618

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018000
Physical Location & Seq
Forward (+)
6781548 .. 6782102
555 bp
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UTR
Exon/CDS
Intron
RLM00000031618

Sequence Viewer

Length: 555 bp
ATGGCATCCCGTCCGCAAAACAAGATTTCTGTAGATGTTGCAGCTGATAAGAGTTCAAGCGATTCCTTTTCGTTTGCTGGTCTCCTGTGTGTTCAGGACCAGCAAGCGAAGTCACTTCAATGTAACAGAGCCAATCATATTCACAAACAAGGCACAGAGTTTGAGTTTAGCACTATAGAAGAGTCCTTTGTGTGTGATCCAATCAAGCATTGCCCAGCTGATCTGTTAATCTCAAACGGTCAGATTGTACCACAACCAATCAAATTTCAACCAACACAGCATACTGTGACCAAGCAGCAACACAAGAAAGCTTCAGTACGAGCAACCAGTGCAAGTAGTAGCAAGAGATCAACTCAAAATACCAGTGGCACCCAAGCTTCTGCAAAACCATATCCGGAGCATAATGACCAAGACAAGGAGGAGCATGCTGTGCCAAGCTCATGGTTTCGCCGAAAAATATTCAAGTCATTTTTCTTCCCTTGCAAGGAAACCAAAGCTGTTAAGCCAACCCTGAGAGCAAATAGAATGCCAGAAGCAAATGGGAAGCTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.54

Weight (kDa)

9.46

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018000)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08820
prunus_persica Prupe.4G050900_v2.0.a1
pyrus_communis pycom10g24350
rosa_laevigata RLG00000031618
rosa_multiflora Rmu_sc0004677.1_g000019
rosa_roxburghii Rroxscaffold_1G00067080
rosa_rugosa Rorug04G0440400
rosa_samantha Rh5AG069100 Rh5BG065900 Rh5CG077100 Rh5DG064900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 368
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 249, 318
AfiI CCNNNNNNNGG 2 cut(s) 415, 484
AgsI TTSAA 4 cut(s) 57, 119, 269, 463
AluBI AGCT 7 cut(s) 44, 218, 311, 377, 438, 497, 547
AluI AGCT 7 cut(s) 44, 218, 311, 377, 438, 497, 547
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 191
Aor13HI TCCGGA 1 cut(s) 394
ApeKI GCWGC 2 cut(s) 41, 295
ApoI RAATTY 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 368
BbvI GCAGC 2 cut(s) 53, 307
BcoDI GTCTC 1 cut(s) 86
BfmI CTRYAG 2 cut(s) 30, 174
BisI GCNGC 2 cut(s) 42, 296
BlsI GCNGC 2 cut(s) 43, 297
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 370
BmsI GCATC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 337, 369
BsaI GGTCTC 1 cut(s) 86
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 484
Bse1I ACTGG 2 cut(s) 327, 363
Bse3DI GCAATG 1 cut(s) 208
BseAI TCCGGA 1 cut(s) 394
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 2 cut(s) 415, 484
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 2 cut(s) 327, 363
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 2 cut(s) 53, 307
BseYI CCCAGC 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 368
BsiSI CCGG 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 415, 484
BsmAI GTCTC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 531
Bso31I GGTCTC 1 cut(s) 86
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 3 cut(s) 196, 220, 347
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 504
BspEI TCCGGA 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 370
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 2 cut(s) 327, 363
BssMI GATC 3 cut(s) 196, 220, 347
Bst4CI ACNGT 2 cut(s) 239, 286
Bst6I CTCTTC 1 cut(s) 174
BstAPI GCANNNNNTGC 2 cut(s) 329, 430
BstC8I GCNNGC 2 cut(s) 105, 426
BstDEI CTNAG 1 cut(s) 512
BstF5I GGATG 1 cut(s) 5
BstKTI GATC 3 cut(s) 199, 223, 350
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 3 cut(s) 196, 220, 347
BstMWI GCNNNNNNNGC 2 cut(s) 329, 430
BstNSI RCATGY 1 cut(s) 428
BstSFI CTRYAG 2 cut(s) 30, 174
BstV1I GCAGC 2 cut(s) 53, 307
BstXI CCANNNNNNTGG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 334, 370
Cac8I GCNNGC 2 cut(s) 105, 426
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 248, 317
CviAII CATG 2 cut(s) 425, 441
CviJI RGCY 9 cut(s) 44, 131, 218, 311, 377, 438, 497, 505, 547
CviKI_1 RGCY 9 cut(s) 44, 131, 218, 311, 377, 438, 497, 505, 547
CviQI GTAC 2 cut(s) 248, 317
DdeI CTNAG 1 cut(s) 512
DpnI GATC 3 cut(s) 198, 222, 349
DpnII GATC 3 cut(s) 196, 220, 347
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 297
FaeI CATG 2 cut(s) 428, 444
FaiI YATR 7 cut(s) 138, 176, 282, 391, 402, 426, 442
FatI CATG 2 cut(s) 424, 440
Fnu4HI GCNGC 2 cut(s) 42, 296
Fsp4HI GCNGC 2 cut(s) 42, 296
GluI GCNGC 2 cut(s) 42, 296
GsaI CCCAGC 1 cut(s) 218
HapII CCGG 1 cut(s) 395
Hin1II CATG 2 cut(s) 428, 444
HindIII AAGCTT 2 cut(s) 309, 375
HinfI GANTC 2 cut(s) 62, 182
HpaII CCGG 1 cut(s) 395
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 95, 395
HpyCH4III ACNGT 2 cut(s) 239, 286
HpyCH4V TGCA 4 cut(s) 41, 332, 383, 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 430
HpyF3I CTNAG 1 cut(s) 512
Hsp92II CATG 2 cut(s) 428, 444
Kpn2I TCCGGA 1 cut(s) 394
Kzo9I GATC 3 cut(s) 196, 220, 347
LmnI GCTCC 2 cut(s) 397, 421
Lsp1109I GCAGC 2 cut(s) 53, 307
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 3 cut(s) 111, 122, 286
MalI GATC 3 cut(s) 198, 222, 349
MboI GATC 3 cut(s) 196, 220, 347
MboII GAAGA 2 cut(s) 191, 466
MluCI AATT 1 cut(s) 263
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 1 cut(s) 412
MroI TCCGGA 1 cut(s) 394
MseI TTAA 2 cut(s) 227, 501
MslI CAYNNNNRTG 1 cut(s) 118
MspA1I CMGCKG 2 cut(s) 44, 218
MspI CCGG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 531
MwoI GCNNNNNNNGC 2 cut(s) 329, 430
NdeII GATC 3 cut(s) 196, 220, 347
NlaIII CATG 2 cut(s) 428, 444
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 111, 286
NspI RCATGY 1 cut(s) 428
PaeI GCATGC 1 cut(s) 428
PctI GAATGC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 43, 297
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 1 cut(s) 97
PvuII CAGCTG 2 cut(s) 44, 218
RsaI GTAC 2 cut(s) 249, 318
RsaNI GTAC 2 cut(s) 248, 317
RseI CAYNNNNRTG 1 cut(s) 118
SaqAI TTAA 2 cut(s) 227, 501
SatI GCNGC 2 cut(s) 42, 296
Sau3AI GATC 3 cut(s) 196, 220, 347
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 1 cut(s) 191
SetI ASST 7 cut(s) 46, 220, 313, 379, 440, 499, 549
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 2 cut(s) 30, 174
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 118
SphI GCATGC 1 cut(s) 428
Sse9I AATT 1 cut(s) 263
SsiI CCGC 1 cut(s) 14
SspI AATATT 1 cut(s) 459
TaaI ACNGT 2 cut(s) 239, 286
TasI AATT 1 cut(s) 263
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 227, 501
Tru9I TTAA 2 cut(s) 227, 501
TscAI CASTG 2 cut(s) 334, 370
TseFI GTSAC 2 cut(s) 111, 286
TseI GCWGC 2 cut(s) 41, 295
Tsp45I GTSAC 2 cut(s) 111, 286
TspRI CASTG 2 cut(s) 334, 370
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 263
XceI RCATGY 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.