Prupe.4G050900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0018000
Physical Location & Seq
Forward (+)
2434521 .. 2435072
552 bp
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UTR
Exon/CDS
Intron
Prupe.4G050900.1

Sequence Viewer

Length: 552 bp
ATGGCAGCCCGCCTGCAAAACAAGATTTCAATGGATGCTGCAGCTGATAGCTGTTCACTTGACTCTTTTTCGTTTGCTGGCCTCCTGTGTGTTCAGGATCAGCAATCCAAGTCCCTCCCTACTAACAGAGCCAATCAAATTCACAAACAAGGCACAGAGTTTGAGTTTGGTCACACTACACCAGAGTCCATTGCGACCGATCCCATCAAGCATTACCCAGCAGACCTGTTAATCTCAAATGGTCAGATCATACCAAAAGCAATTGTACTTCAATCAACACAGCATGTGCCAACTAACCAGCCCTGCATCAAAGATTCAGTACGAGCAGCCCGTACCAGTAGCAAGAGATCAACTGACAACACCGGTGGCACAGAAACTGCTAAACCAAATCCAGAATTTGGAAACCAAGAGAAAAAAGAAAACCCTGCGCCAAGATCATGGTTTGGCCAGAAAATATTCAAGTCATTTCTCTTCCCTTGCAAGGAATGCCGAGTTTCTAAGCCAACGCAGAGAGGACACAGAATCCCAGAAGAAAATGGGAAGTTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.23

Weight (kDa)

9.16

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018000)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08820
prunus_persica Prupe.4G050900_v2.0.a1
pyrus_communis pycom10g24350
rosa_laevigata RLG00000031618
rosa_multiflora Rmu_sc0004677.1_g000019
rosa_roxburghii Rroxscaffold_1G00067080
rosa_rugosa Rorug04G0440400
rosa_samantha Rh5AG069100 Rh5BG065900 Rh5CG077100 Rh5DG064900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 398
AciI CCGC 1 cut(s) 10
AclWI GGATC 2 cut(s) 105, 194
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 2 cut(s) 138, 395
AfaI GTAC 3 cut(s) 267, 321, 334
AfiI CCNNNNNNNGG 2 cut(s) 398, 481
AgeI ACCGGT 1 cut(s) 362
AgsI TTSAA 3 cut(s) 30, 272, 460
AluBI AGCT 2 cut(s) 44, 51
AluI AGCT 2 cut(s) 44, 51
AlwI GGATC 2 cut(s) 105, 194
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 2 cut(s) 79, 445
ApeKI GCWGC 4 cut(s) 5, 38, 41, 326
ApoI RAATTY 2 cut(s) 138, 395
AsiGI ACCGGT 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 455
AspLEI GCGC 1 cut(s) 430
BalI TGGCCA 1 cut(s) 447
BbvI GCAGC 4 cut(s) 17, 25, 53, 338
BccI CCATC 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 4 cut(s) 6, 39, 42, 327
BlsI GCNGC 4 cut(s) 7, 40, 43, 328
BmsI GCATC 2 cut(s) 25, 315
BsaWI WCCGGW 1 cut(s) 362
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 481
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 189
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 398, 481
BseMI GCAATG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 336
BseXI GCAGC 4 cut(s) 17, 25, 53, 338
BseYI CCCAGC 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 81, 447
BshTI ACCGGT 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 198
BsiSI CCGG 1 cut(s) 363
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 398, 481
BsmFI GGGAC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 2 cut(s) 81, 447
Bsp143I GATC 5 cut(s) 97, 199, 246, 347, 434
BspACI CCGC 1 cut(s) 10
BspANI GGCC 2 cut(s) 81, 447
BspMAI CTGCAG 1 cut(s) 43
BspPI GGATC 2 cut(s) 105, 194
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 362
BsrI ACTGG 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 362
BssMI GATC 5 cut(s) 97, 199, 246, 347, 434
Bst6I CTCTTC 1 cut(s) 476
BstAPI GCANNNNNTGC 1 cut(s) 486
BstC8I GCNNGC 3 cut(s) 10, 14, 79
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 40
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 5 cut(s) 100, 202, 249, 350, 437
BstMBI GATC 5 cut(s) 97, 199, 246, 347, 434
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstNSI RCATGY 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 4 cut(s) 17, 25, 53, 338
BstXI CCANNNNNNTGG 1 cut(s) 438
BsuRI GGCC 2 cut(s) 81, 447
BtsCI GGATG 1 cut(s) 40
Cac8I GCNNGC 3 cut(s) 10, 14, 79
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 362
Csp6I GTAC 3 cut(s) 266, 320, 333
CspAI ACCGGT 1 cut(s) 362
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 2 cut(s) 284, 438
CviJI RGCY 9 cut(s) 8, 44, 51, 81, 131, 301, 329, 447, 502
CviKI_1 RGCY 9 cut(s) 8, 44, 51, 81, 131, 301, 329, 447, 502
CviQI GTAC 3 cut(s) 266, 320, 333
DdeI CTNAG 1 cut(s) 498
DpnI GATC 5 cut(s) 99, 201, 248, 349, 436
DpnII GATC 5 cut(s) 97, 199, 246, 347, 434
EaeI YGGCCR 1 cut(s) 445
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
FaeI CATG 2 cut(s) 287, 441
FaiI YATR 3 cut(s) 251, 285, 439
FaqI GGGAC 1 cut(s) 97
FatI CATG 2 cut(s) 283, 437
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 4 cut(s) 6, 39, 42, 327
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 4 cut(s) 6, 39, 42, 327
GlaI GCGC 1 cut(s) 429
GluI GCNGC 4 cut(s) 6, 39, 42, 327
GsaI CCCAGC 1 cut(s) 221
HaeIII GGCC 2 cut(s) 81, 447
HapII CCGG 1 cut(s) 363
HhaI GCGC 1 cut(s) 430
Hin1II CATG 2 cut(s) 287, 441
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 4 cut(s) 62, 185, 314, 522
HpaII CCGG 1 cut(s) 363
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 2 cut(s) 95, 392
Hpy8I GTNNAC 1 cut(s) 56
HpyCH4V TGCA 4 cut(s) 16, 41, 306, 480
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpyF3I CTNAG 1 cut(s) 498
Hsp92II CATG 2 cut(s) 287, 441
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 5 cut(s) 97, 199, 246, 347, 434
Lsp1109I GCAGC 4 cut(s) 17, 25, 53, 338
LweI GCATC 2 cut(s) 25, 315
MaeIII GTNAC 2 cut(s) 170, 543
MalI GATC 5 cut(s) 99, 201, 248, 349, 436
MboI GATC 5 cut(s) 97, 199, 246, 347, 434
MboII GAAGA 2 cut(s) 463, 542
MfeI CAATTG 1 cut(s) 261
MlsI TGGCCA 1 cut(s) 447
MluCI AATT 3 cut(s) 138, 261, 395
MluNI TGGCCA 1 cut(s) 447
MlyI GAGTC 2 cut(s) 56, 194
MnlI CCTC 3 cut(s) 92, 125, 506
Mox20I TGGCCA 1 cut(s) 447
MroXI GAANNNNTTC 1 cut(s) 455
MscI TGGCCA 1 cut(s) 447
MseI TTAA 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 363
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 1 cut(s) 491
MwoI GCNNNNNNNGC 1 cut(s) 486
NdeII GATC 5 cut(s) 97, 199, 246, 347, 434
NlaIII CATG 2 cut(s) 287, 441
NmeAIII GCCGAG 1 cut(s) 515
NmuCI GTSAC 1 cut(s) 170
NspI RCATGY 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PctI GAATGC 1 cut(s) 491
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 2 cut(s) 314, 522
PflMI CCANNNNNTGG 1 cut(s) 398
PinAI ACCGGT 1 cut(s) 362
PkrI GCNGC 4 cut(s) 7, 40, 43, 328
PleI GAGTC 2 cut(s) 56, 193
PpsI GAGTC 2 cut(s) 56, 193
PspFI CCCAGC 1 cut(s) 217
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 3 cut(s) 267, 321, 334
RsaNI GTAC 3 cut(s) 266, 320, 333
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 4 cut(s) 6, 39, 42, 327
Sau3AI GATC 5 cut(s) 97, 199, 246, 347, 434
SchI GAGTC 2 cut(s) 56, 194
SetI ASST 3 cut(s) 46, 53, 228
SfaNI GCATC 2 cut(s) 25, 315
SfcI CTRYAG 1 cut(s) 39
SgrAI CRCCGGYG 1 cut(s) 362
Sse9I AATT 3 cut(s) 138, 261, 395
SsiI CCGC 1 cut(s) 10
SspI AATATT 1 cut(s) 456
TaqII GACCGA 1 cut(s) 212
TasI AATT 3 cut(s) 138, 261, 395
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 2 cut(s) 314, 522
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 4 cut(s) 5, 38, 41, 326
Tsp45I GTSAC 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 398
XapI RAATTY 2 cut(s) 138, 395
XceI RCATGY 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.