Rorug04G0440400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0018000
Physical Location & Seq
Reverse (-)
59727542 .. 59728227
686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0440400.1

Sequence Viewer

Length: 600 bp
ATGATGCTTGTTGCCGTATCAACATCCTTCAGTCCTGCAACGGCCTCTTGCTCTGACAGTCCGATGTTTCTCCTGAGTCTGTTTATGTTGTCAATCCTACTACTAAGTACTAACCAATTCGAGAACGTTTCTTATCCTCATAACTCGTCTAGTGAAGAACCATACGAATGGCTATATGGTTTGGCTTTTAAATCACCTTATTACAAGGTGGTATGCCTTGCATGGCACCAAATCCTACACACGCGGTCTACTGCATGCAGCGGAGCGCTTCACTGGATCAGGGGTAAACGCTCCGTTGACAATACCAAGTTGGTACACTTCTATAATCTAGATGAAGAGCGTTTGGGATCAGTCGCCGCTGCGAGTTACCATCACCTTAATAAGGGGGAAATCGTTTATAGATATTTTGGGGAGTCCGGTGGTCATCTGCATCTGATTGATACATACGAGTACTCCGGTAATGCTTTTGATGTGATGGAGATGGGGAGGGACTACTCCGGCTGGTTTGTCAAGTACCACGTTGATCTCATTCCTACCATGGCTGGTTTTCCTGAGAGTAGTGGTACAATTGTGATTTTGTCGTCTTGTTACTTGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.45

Weight (kDa)

5.88

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018000)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08820
prunus_persica Prupe.4G050900_v2.0.a1
pyrus_communis pycom10g24350
rosa_laevigata RLG00000031618
rosa_multiflora Rmu_sc0004677.1_g000019
rosa_roxburghii Rroxscaffold_1G00067080
rosa_rugosa Rorug04G0440400
rosa_samantha Rh5AG069100 Rh5BG065900 Rh5CG077100 Rh5DG064900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 225
AccI GTMKAC 1 cut(s) 248
AccII CGCG 1 cut(s) 244
AciI CCGC 3 cut(s) 244, 261, 357
AclI AACGTT 1 cut(s) 126
AclWI GGATC 2 cut(s) 284, 355
AcuI CTGAAG 1 cut(s) 13
AfaI GTAC 5 cut(s) 109, 315, 452, 515, 565
AfeI AGCGCT 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 382
AlwI GGATC 2 cut(s) 284, 355
Aor51HI AGCGCT 1 cut(s) 267
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 258, 359
AspLEI GCGC 1 cut(s) 268
AsuHPI GGTGA 2 cut(s) 186, 365
BaeI ACNNNNGTAYC 2 cut(s) 555, 588
BanI GGYRCC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 270, 346
BccI CCATC 3 cut(s) 378, 469, 475
BceAI ACGGC 1 cut(s) 57
BfaI CTAG 3 cut(s) 150, 329, 598
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 3 cut(s) 259, 357, 360
BlsI GCNGC 3 cut(s) 260, 358, 361
BmcAI AGTACT 2 cut(s) 109, 452
BmiI GGNNCC 1 cut(s) 227
BmsI GCATC 1 cut(s) 439
BsaJI CCNNGG 1 cut(s) 537
BsaWI WCCGGW 2 cut(s) 416, 455
BsaXI ACNNNNNCTCC 2 cut(s) 437, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 537
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 2 cut(s) 65, 543
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 270, 346
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 225
BsiSI CCGG 3 cut(s) 417, 456, 498
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 276, 347, 523
Bsp19I CCATGG 1 cut(s) 537
BspACI CCGC 3 cut(s) 244, 261, 357
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 2 cut(s) 66, 544
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 227
BspPI GGATC 2 cut(s) 284, 355
BspQI GCTCTTC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 225
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 537
BssMI GATC 3 cut(s) 276, 347, 523
BssT1I CCWWGG 1 cut(s) 537
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 3 cut(s) 74, 104, 552
BstDSI CCRYGG 1 cut(s) 537
BstENI CCTNNNNNAGG 1 cut(s) 380
BstF5I GGATG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 244
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 3 cut(s) 279, 350, 526
BstMBI GATC 3 cut(s) 276, 347, 523
BstNSI RCATGY 1 cut(s) 258
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 270, 346
BstXI CCANNNNNNTGG 1 cut(s) 168
BsuRI GGCC 1 cut(s) 44
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 268
Csp6I GTAC 5 cut(s) 108, 314, 451, 514, 564
CviAII CATG 3 cut(s) 222, 255, 538
CviJI RGCY 5 cut(s) 44, 172, 185, 501, 542
CviKI_1 RGCY 5 cut(s) 44, 172, 185, 501, 542
CviQI GTAC 5 cut(s) 108, 314, 451, 514, 564
DdeI CTNAG 3 cut(s) 74, 104, 552
DpnI GATC 3 cut(s) 278, 349, 525
DpnII GATC 3 cut(s) 276, 347, 523
DraI TTTAAA 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 537
Eco47III AGCGCT 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 13
EcoNI CCTNNNNNAGG 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 3 cut(s) 225, 258, 541
FaqI GGGAC 1 cut(s) 503
FatI CATG 3 cut(s) 221, 254, 537
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 259, 357, 360
FokI GGATG 1 cut(s) 10
Fsp4HI GCNGC 3 cut(s) 259, 357, 360
FspBI CTAG 3 cut(s) 150, 329, 598
GlaI GCGC 1 cut(s) 267
GluI GCNGC 3 cut(s) 259, 357, 360
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 1 cut(s) 44
HapII CCGG 3 cut(s) 417, 456, 498
HhaI GCGC 1 cut(s) 268
Hin1II CATG 3 cut(s) 225, 258, 541
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 2 cut(s) 76, 413
HpaII CCGG 3 cut(s) 417, 456, 498
HphI GGTGA 2 cut(s) 186, 365
Hpy166II GTNNAC 4 cut(s) 249, 287, 298, 316
Hpy188I TCNGA 3 cut(s) 55, 63, 435
Hpy188III TCNNGA 4 cut(s) 73, 121, 329, 551
Hpy8I GTNNAC 4 cut(s) 249, 287, 298, 316
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 2 cut(s) 126, 519
HpyCH4V TGCA 5 cut(s) 38, 221, 254, 258, 430
HpyF3I CTNAG 3 cut(s) 74, 104, 552
HpySE526I ACGT 2 cut(s) 126, 519
Hsp92II CATG 3 cut(s) 225, 258, 541
HspAI GCGC 1 cut(s) 266
Kzo9I GATC 3 cut(s) 276, 347, 523
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 263, 296
Lsp1109I GCAGC 2 cut(s) 270, 346
LweI GCATC 1 cut(s) 439
MaeI CTAG 3 cut(s) 150, 329, 598
MaeII ACGT 2 cut(s) 126, 519
MaeIII GTNAC 2 cut(s) 365, 587
MalI GATC 3 cut(s) 278, 349, 525
MboI GATC 3 cut(s) 276, 347, 523
MboII GAAGA 2 cut(s) 167, 347
MfeI CAATTG 1 cut(s) 567
MluCI AATT 2 cut(s) 116, 567
MlyI GAGTC 2 cut(s) 85, 422
MnlI CCTC 3 cut(s) 55, 147, 480
MseI TTAA 2 cut(s) 189, 378
MslI CAYNNNNRTG 1 cut(s) 166
MspA1I CMGCKG 2 cut(s) 261, 359
MspI CCGG 3 cut(s) 417, 456, 498
MunI CAATTG 1 cut(s) 567
MvnI CGCG 1 cut(s) 244
NcoI CCATGG 1 cut(s) 537
NdeII GATC 3 cut(s) 276, 347, 523
NlaIII CATG 3 cut(s) 225, 258, 541
NlaIV GGNNCC 1 cut(s) 227
NspI RCATGY 1 cut(s) 258
PaeI GCATGC 1 cut(s) 258
PciSI GCTCTTC 1 cut(s) 330
PkrI GCNGC 3 cut(s) 260, 358, 361
PleI GAGTC 2 cut(s) 84, 421
PpsI GAGTC 2 cut(s) 84, 421
Psp1406I AACGTT 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 227
RsaI GTAC 5 cut(s) 109, 315, 452, 515, 565
RsaNI GTAC 5 cut(s) 108, 314, 451, 514, 564
RseI CAYNNNNRTG 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 2 cut(s) 189, 378
SatI GCNGC 3 cut(s) 259, 357, 360
Sau3AI GATC 3 cut(s) 276, 347, 523
ScaI AGTACT 2 cut(s) 109, 452
SchI GAGTC 2 cut(s) 85, 422
SetI ASST 5 cut(s) 129, 199, 210, 378, 522
SfaNI GCATC 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 166
SphI GCATGC 1 cut(s) 258
Sse9I AATT 2 cut(s) 116, 567
SsiI CCGC 3 cut(s) 244, 261, 357
SspMI CTAG 3 cut(s) 150, 329, 598
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 2 cut(s) 129, 522
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 116, 567
TatI WGTACW 2 cut(s) 107, 450
TauI GCSGC 1 cut(s) 359
Tru1I TTAA 2 cut(s) 189, 378
Tru9I TTAA 2 cut(s) 189, 378
TscAI CASTG 1 cut(s) 278
TseI GCWGC 2 cut(s) 258, 359
TspDTI ATGAA 1 cut(s) 348
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 278
XagI CCTNNNNNAGG 1 cut(s) 380
XbaI TCTAGA 1 cut(s) 328
XceI RCATGY 1 cut(s) 258
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 3 cut(s) 150, 329, 598
ZrmI AGTACT 2 cut(s) 109, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.