Rh5AG069100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018000
Physical Location & Seq
Forward (+)
5832399 .. 5833885
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG069100.1

Sequence Viewer

Length: 534 bp
ATGGCATCCCGTCTGCAAAACAAGATTTCTGTAGATGTTGCAGCTGATAAGAGTTCAAGCGATTCCTTTTCGTTTGCTGGTCTCCTGTGTGTTCAGGACCAGCAAGCGAAGTCACTTCAATGTAACAGAGCCAATCAAATTCACAAACAAGGCACAGAGTTTGAGTTTAGCACTATAGAAGAGTCCATTGTGTGTGATCCAATCAAGCATTGCCCAGCTGATCTGTTAATCTCAAACGGTCAGATTGTACCACAACCAATCAAATTTCAACCAACACAGCATACTGTGACAAAGCAGCAACACAAGAAAGCTTCAGTACGAGCAACCACTACAAGTAGCAAGAGATCAACTCAAAATACCAGTGGCACCCAAGCTTCTGCAAAACCATATCCAGAGCATAATGACCAAGACAAGAAGGAGCATGCTGTGCCAAGCTCCTGGTTTGGCCGGAAAATATTCAAGTCATTTTTCTTCCCTTGCAAGGAAACCAAAGCTGTTAAGCCAACCCTTAGAGCAAATGGGAAGCTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.67

Weight (kDa)

9.54

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018000)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08820
prunus_persica Prupe.4G050900_v2.0.a1
pyrus_communis pycom10g24350
rosa_laevigata RLG00000031618
rosa_multiflora Rmu_sc0004677.1_g000019
rosa_roxburghii Rroxscaffold_1G00067080
rosa_rugosa Rorug04G0440400
rosa_samantha Rh5AG069100 Rh5BG065900 Rh5CG077100 Rh5DG064900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 365
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 445
AcsI RAATTY 2 cut(s) 138, 263
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 249, 318
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 4 cut(s) 57, 119, 269, 460
AjnI CCWGG 1 cut(s) 437
AluBI AGCT 7 cut(s) 44, 218, 311, 374, 435, 494, 526
AluI AGCT 7 cut(s) 44, 218, 311, 374, 435, 494, 526
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 191
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 2 cut(s) 41, 295
ApoI RAATTY 2 cut(s) 138, 263
Asp700I GAANNNNTTC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 365
BbvI GCAGC 2 cut(s) 53, 307
BciT130I CCWGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 86
BfmI CTRYAG 2 cut(s) 30, 174
BisI GCNGC 2 cut(s) 42, 296
BlsI GCNGC 2 cut(s) 43, 297
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BsaI GGTCTC 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 439
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 360
BseXI GCAGC 2 cut(s) 53, 307
BseYI CCCAGC 1 cut(s) 214
BshFI GGCC 1 cut(s) 447
BshNI GGYRCC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 1 cut(s) 447
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 3 cut(s) 196, 220, 344
BspANI GGCC 1 cut(s) 447
BspLI GGNNCC 1 cut(s) 367
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 360
BssMI GATC 3 cut(s) 196, 220, 344
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 2 cut(s) 239, 286
Bst6I CTCTTC 1 cut(s) 174
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 105, 423
BstDEI CTNAG 1 cut(s) 509
BstF5I GGATG 1 cut(s) 5
BstKTI GATC 3 cut(s) 199, 223, 347
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 3 cut(s) 196, 220, 344
BstMWI GCNNNNNNNGC 1 cut(s) 427
BstNI CCWGG 1 cut(s) 439
BstNSI RCATGY 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 2 cut(s) 30, 174
BstV1I GCAGC 2 cut(s) 53, 307
BstXI CCANNNNNNTGG 1 cut(s) 438
BsuRI GGCC 1 cut(s) 447
BtsCI GGATG 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 105, 423
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 248, 317
CviAII CATG 1 cut(s) 422
CviQI GTAC 2 cut(s) 248, 317
DdeI CTNAG 1 cut(s) 509
DpnI GATC 3 cut(s) 198, 222, 346
DpnII GATC 3 cut(s) 196, 220, 344
EaeI YGGCCR 1 cut(s) 445
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 437
FaeI CATG 1 cut(s) 425
FaiI YATR 5 cut(s) 176, 282, 388, 399, 423
FatI CATG 1 cut(s) 421
Fnu4HI GCNGC 2 cut(s) 42, 296
Fsp4HI GCNGC 2 cut(s) 42, 296
GluI GCNGC 2 cut(s) 42, 296
GsaI CCCAGC 1 cut(s) 218
HaeIII GGCC 1 cut(s) 447
HapII CCGG 1 cut(s) 448
Hin1II CATG 1 cut(s) 425
HindIII AAGCTT 2 cut(s) 309, 372
HinfI GANTC 2 cut(s) 62, 182
HpaII CCGG 1 cut(s) 448
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 95, 392
HpyAV CCTTC 1 cut(s) 409
HpyCH4III ACNGT 2 cut(s) 239, 286
HpyCH4V TGCA 4 cut(s) 16, 41, 380, 480
HpyF10VI GCNNNNNNNGC 1 cut(s) 427
HpyF3I CTNAG 1 cut(s) 509
Hsp92II CATG 1 cut(s) 425
Kzo9I GATC 3 cut(s) 196, 220, 344
LmnI GCTCC 2 cut(s) 418, 440
Lsp1109I GCAGC 2 cut(s) 53, 307
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 3 cut(s) 111, 122, 286
MalI GATC 3 cut(s) 198, 222, 346
MboI GATC 3 cut(s) 196, 220, 344
MboII GAAGA 2 cut(s) 191, 463
MluCI AATT 2 cut(s) 138, 263
MlyI GAGTC 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 455
MseI TTAA 2 cut(s) 227, 498
MslI CAYNNNNRTG 1 cut(s) 118
MspA1I CMGCKG 2 cut(s) 44, 218
MspI CCGG 1 cut(s) 448
MspR9I CCNGG 1 cut(s) 439
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 427
NdeII GATC 3 cut(s) 196, 220, 344
NlaIII CATG 1 cut(s) 425
NlaIV GGNNCC 1 cut(s) 367
NmuCI GTSAC 2 cut(s) 111, 286
NspI RCATGY 1 cut(s) 425
PaeI GCATGC 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 43, 297
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 1 cut(s) 367
PspPI GGNCC 1 cut(s) 97
PvuII CAGCTG 2 cut(s) 44, 218
RsaI GTAC 2 cut(s) 249, 318
RsaNI GTAC 2 cut(s) 248, 317
RseI CAYNNNNRTG 1 cut(s) 118
SaqAI TTAA 2 cut(s) 227, 498
SatI GCNGC 2 cut(s) 42, 296
Sau3AI GATC 3 cut(s) 196, 220, 344
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 439
SetI ASST 7 cut(s) 46, 220, 313, 376, 437, 496, 528
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 2 cut(s) 30, 174
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 118
SphI GCATGC 1 cut(s) 425
Sse9I AATT 2 cut(s) 138, 263
SspI AATATT 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 2 cut(s) 239, 286
TasI AATT 2 cut(s) 138, 263
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 227, 498
Tru9I TTAA 2 cut(s) 227, 498
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 2 cut(s) 111, 286
TseI GCWGC 2 cut(s) 41, 295
Tsp45I GTSAC 2 cut(s) 111, 286
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 2 cut(s) 138, 263
XceI RCATGY 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.