FvH4_3g10800

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0019167
Physical Location & Seq
Forward (+)
6432004 .. 6433321
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10800.t1

Sequence Viewer

Length: 822 bp
ATGATGCACAAAGATGGACATGTGTTTTTGAGGGAATATGAAGATGGTGATAAGAAGCTTAGTAGTCGTAAGGTCAGCCATGGATCCAATTTGGTGAGGGGACAAATGGACCATGGAATGGAAGATTATCTCGTGGCAGAAACTAGAGAAGTAAATGGCTATGAGTTGGGTTTGTATGCAATTTTTGATGGCCATTCTGGTACAAAAGTTGCAGAATACTTTCAAGCTCATCTATTTGATAACATACTAAGTCAGCATGAATTTTGGACCTACCCAATAGAAGCAATCAAGAGAGCTTATAAAGCTACAGATGATGAGATTTTGGAAAAGGTGGCTGAATCAAGAGGCGGATCCACTGCTGTCACAGCAATACTTATCAATGGAGAGAAGCTAATTGTAGCCAATGTCGGCGACTCCCGAGCAGTTTTATGCAGAGATGGTTTGGCTGAGCAGTTAACAGTAGATCATGACCCTCAGAAGGAGAAGGATCTTGTTGAAAGCAGAGGTGGTTGTGTTTTTCAGCTGCCAGGAAATGTTCCTCGTGTGGATGCGCAACTTGCTATGTCGCGGGCATTTGGGGATGGTGACCTGAAGGAGCACATAACTTCAGAACCAGATATCAACATCAACAAGATCGACACTGATGCAGAATTCATTATACTGGCAAGTGATGGTTTGTGGAAAGTGATGTCAAACCAGGATGCTTATGATTGCATTAAGGGTCTAGATGATGCTGAAAAAGCAGCAAAGAAGTTGATTCAGATAGCATTATCCAAGAAAAGCTATGATGATATCTCTTGCATAGTTGTGGTCTTCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C RVT_3

Protein Analysis

274

Amino Acids

30.33

Weight (kDa)

4.92

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 38 - 265 1.4e-53 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34740 AT2G34740 AT2G34740
fragaria_vesca FvH4_3g10800
malus_domestica MD10G1247400.v1.1
prunus_persica Prupe.4G095900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0261331
rosa_wichuraiana Rw5G011290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
Acc16I TGCGCA 1 cut(s) 552
AccB7I CCANNNNNTGG 1 cut(s) 118
AccII CGCG 1 cut(s) 568
AciI CCGC 2 cut(s) 348, 568
AclWI GGATC 5 cut(s) 78, 91, 345, 358, 495
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 260, 650
AcuI CTGAAG 2 cut(s) 591, 611
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 118, 478
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 2 cut(s) 224, 497
AjnI CCWGG 2 cut(s) 526, 696
AluBI AGCT 7 cut(s) 58, 227, 296, 305, 391, 523, 783
AluI AGCT 7 cut(s) 58, 227, 296, 305, 391, 523, 783
Alw21I GWGCWC 1 cut(s) 600
AlwI GGATC 5 cut(s) 78, 91, 345, 358, 495
Ama87I CYCGRG 1 cut(s) 417
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 523, 743
ApoI RAATTY 2 cut(s) 260, 650
Asp700I GAANNNNTTC 1 cut(s) 219
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 2 cut(s) 109, 267
AsuHPI GGTGA 3 cut(s) 59, 106, 596
AvaI CYCGRG 1 cut(s) 417
AvaII GGWCC 2 cut(s) 109, 267
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BalI TGGCCA 1 cut(s) 192
BamHI GGATCC 2 cut(s) 83, 350
BauI CACGAG 2 cut(s) 131, 540
BbsI GAAGAC 1 cut(s) 805
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 2 cut(s) 510, 755
BccI CCATC 6 cut(s) 8, 38, 182, 431, 575, 665
BcgI CGANNNNNNTGC 2 cut(s) 626, 660
BciT130I CCWGG 2 cut(s) 528, 698
BfaI CTAG 3 cut(s) 144, 725, 820
BfmI CTRYAG 1 cut(s) 306
BisI GCNGC 2 cut(s) 524, 744
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 2 cut(s) 525, 745
Bme1390I CCNGG 2 cut(s) 528, 698
Bme18I GGWCC 2 cut(s) 109, 267
BmeT110I CYCGRG 1 cut(s) 417
BmgT120I GGNCC 2 cut(s) 109, 267
BmiI GGNNCC 2 cut(s) 85, 352
BmrFI CCNGG 2 cut(s) 528, 698
BmsI GCATC 4 cut(s) 538, 634, 691, 721
BpiI GAAGAC 1 cut(s) 805
Bpu1102I GCTNAGC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 79, 112
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 478
Bse1I ACTGG 1 cut(s) 666
BseBI CCWGG 2 cut(s) 528, 698
BseDI CCNNGG 2 cut(s) 79, 112
BseGI GGATG 3 cut(s) 553, 586, 706
BseLI CCNNNNNNNGG 2 cut(s) 118, 478
BseMII CTCAG 2 cut(s) 438, 488
BseNI ACTGG 1 cut(s) 666
BseXI GCAGC 2 cut(s) 510, 755
Bsh1236I CGCG 1 cut(s) 568
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 600
BsiHKCI CYCGRG 1 cut(s) 417
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 118, 478
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 5 cut(s) 83, 350, 463, 487, 633
Bsp1720I GCTNAGC 1 cut(s) 447
Bsp19I CCATGG 2 cut(s) 79, 112
BspACI CCGC 2 cut(s) 348, 568
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 439, 487
BspFNI CGCG 1 cut(s) 568
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 2 cut(s) 85, 352
BspPI GGATC 5 cut(s) 78, 91, 345, 358, 495
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 2 cut(s) 79, 112
BssMI GATC 5 cut(s) 83, 350, 463, 487, 633
BssSI CACGAG 2 cut(s) 131, 540
BssT1I CCWWGG 2 cut(s) 79, 112
Bst2BI CACGAG 2 cut(s) 131, 540
Bst2UI CCWGG 2 cut(s) 528, 698
Bst4CI ACNGT 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 4 cut(s) 59, 248, 447, 474
BstDSI CCRYGG 2 cut(s) 79, 112
BstEII GGTNACC 1 cut(s) 584
BstF5I GGATG 3 cut(s) 553, 586, 706
BstFNI CGCG 1 cut(s) 568
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 5 cut(s) 86, 353, 466, 490, 636
BstMBI GATC 5 cut(s) 83, 350, 463, 487, 633
BstMWI GCNNNNNNNGC 4 cut(s) 302, 365, 557, 740
BstNI CCWGG 2 cut(s) 528, 698
BstNSI RCATGY 1 cut(s) 23
BstPI GGTNACC 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 526, 696
BstSFI CTRYAG 1 cut(s) 306
BstUI CGCG 1 cut(s) 568
BstV1I GCAGC 2 cut(s) 510, 755
BstV2I GAAGAC 1 cut(s) 805
BstX2I RGATCY 3 cut(s) 83, 350, 487
BstYI RGATCY 3 cut(s) 83, 350, 487
BsuRI GGCC 1 cut(s) 192
BtgI CCRYGG 2 cut(s) 79, 112
BtsCI GGATG 3 cut(s) 553, 586, 706
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 354, 639
Cac8I GCNNGC 1 cut(s) 570
CciI TCATGA 1 cut(s) 466
CfoI GCGC 1 cut(s) 553
Cfr13I GGNCC 2 cut(s) 109, 267
Csp6I GTAC 1 cut(s) 201
CviAII CATG 5 cut(s) 20, 80, 113, 257, 467
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 4 cut(s) 59, 248, 447, 474
DpnI GATC 5 cut(s) 85, 352, 465, 489, 635
DpnII GATC 5 cut(s) 83, 350, 463, 487, 633
EaeI YGGCCR 1 cut(s) 190
EciI GGCGGA 1 cut(s) 363
Eco130I CCWWGG 2 cut(s) 79, 112
Eco32I GATATC 2 cut(s) 619, 793
Eco47I GGWCC 2 cut(s) 109, 267
Eco57I CTGAAG 2 cut(s) 591, 611
Eco88I CYCGRG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 584
EcoRI GAATTC 1 cut(s) 650
EcoRII CCWGG 2 cut(s) 526, 696
EcoRV GATATC 2 cut(s) 619, 793
EcoT14I CCWWGG 2 cut(s) 79, 112
ErhI CCWWGG 2 cut(s) 79, 112
FaeI CATG 5 cut(s) 23, 83, 116, 260, 470
FaqI GGGAC 1 cut(s) 114
FatI CATG 5 cut(s) 19, 79, 112, 256, 466
FauI CCCGC 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 524, 744
FokI GGATG 3 cut(s) 560, 593, 713
Fsp4HI GCNGC 2 cut(s) 524, 744
FspBI CTAG 3 cut(s) 144, 725, 820
FspI TGCGCA 1 cut(s) 552
GlaI GCGC 1 cut(s) 552
GluI GCNGC 2 cut(s) 524, 744
HaeIII GGCC 1 cut(s) 192
HhaI GCGC 1 cut(s) 553
Hin1II CATG 5 cut(s) 23, 83, 116, 260, 470
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 3 cut(s) 338, 413, 757
HpaI GTTAAC 1 cut(s) 456
HphI GGTGA 3 cut(s) 59, 106, 596
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 3 cut(s) 477, 610, 762
Hpy188III TCNNGA 5 cut(s) 289, 342, 417, 467, 725
Hpy8I GTNNAC 1 cut(s) 456
HpyAV CCTTC 3 cut(s) 472, 478, 586
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4V TGCA 7 cut(s) 7, 179, 212, 432, 647, 714, 801
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 365, 557, 740
HpyF3I CTNAG 4 cut(s) 59, 248, 447, 474
Hsp92II CATG 5 cut(s) 23, 83, 116, 260, 470
HspAI GCGC 1 cut(s) 551
KspAI GTTAAC 1 cut(s) 456
Kzo9I GATC 5 cut(s) 83, 350, 463, 487, 633
LmnI GCTCC 1 cut(s) 595
LpnPI CCDG 8 cut(s) 183, 513, 540, 602, 627, 647, 683, 710
Lsp1109I GCAGC 2 cut(s) 510, 755
LweI GCATC 4 cut(s) 538, 634, 691, 721
MaeI CTAG 3 cut(s) 144, 725, 820
MaeIII GTNAC 2 cut(s) 361, 584
MalI GATC 5 cut(s) 85, 352, 465, 489, 635
MboI GATC 5 cut(s) 83, 350, 463, 487, 633
MboII GAAGA 3 cut(s) 53, 134, 805
MflI RGATCY 3 cut(s) 83, 350, 487
MhlI GDGCHC 1 cut(s) 600
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 5 cut(s) 88, 180, 260, 393, 650
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 1 cut(s) 407
MnlI CCTC 6 cut(s) 24, 90, 338, 483, 497, 549
Mox20I TGGCCA 1 cut(s) 192
MroXI GAANNNNTTC 1 cut(s) 219
MscI TGGCCA 1 cut(s) 192
MseI TTAA 2 cut(s) 455, 717
MslI CAYNNNNRTG 2 cut(s) 12, 806
Msp20I TGGCCA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 523
MspR9I CCNGG 2 cut(s) 528, 698
MvaI CCWGG 2 cut(s) 528, 698
MvnI CGCG 1 cut(s) 568
MwoI GCNNNNNNNGC 4 cut(s) 302, 365, 557, 740
NcoI CCATGG 2 cut(s) 79, 112
NdeII GATC 5 cut(s) 83, 350, 463, 487, 633
NlaIII CATG 5 cut(s) 23, 83, 116, 260, 470
NlaIV GGNNCC 2 cut(s) 85, 352
NmuCI GTSAC 2 cut(s) 361, 584
NsbI TGCGCA 1 cut(s) 552
NspI RCATGY 1 cut(s) 23
PagI TCATGA 1 cut(s) 466
PciI ACATGT 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 2 cut(s) 338, 757
PflMI CCANNNNNTGG 1 cut(s) 118
PkrI GCNGC 2 cut(s) 525, 745
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
PscI ACATGT 1 cut(s) 19
PsiI TTATAA 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 526, 696
PspEI GGTNACC 1 cut(s) 584
PspGI CCWGG 2 cut(s) 526, 696
PspN4I GGNNCC 2 cut(s) 85, 352
PspPI GGNCC 2 cut(s) 109, 267
PsuI RGATCY 3 cut(s) 83, 350, 487
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
RseI CAYNNNNRTG 2 cut(s) 12, 806
SaqAI TTAA 2 cut(s) 455, 717
SatI GCNGC 2 cut(s) 524, 744
Sau3AI GATC 5 cut(s) 83, 350, 463, 487, 633
Sau96I GGNCC 2 cut(s) 109, 267
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 2 cut(s) 528, 698
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 4 cut(s) 538, 634, 691, 721
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 2 cut(s) 109, 267
SmiMI CAYNNNNRTG 2 cut(s) 12, 806
Sse9I AATT 5 cut(s) 88, 180, 260, 393, 650
SsiI CCGC 2 cut(s) 348, 568
SspMI CTAG 3 cut(s) 144, 725, 820
StyD4I CCNGG 2 cut(s) 526, 696
StyI CCWWGG 2 cut(s) 79, 112
TaaI ACNGT 1 cut(s) 460
TaqI TCGA 2 cut(s) 636, 816
TasI AATT 5 cut(s) 88, 180, 260, 393, 650
TfiI GAWTC 2 cut(s) 338, 757
Tru1I TTAA 2 cut(s) 455, 717
Tru9I TTAA 2 cut(s) 455, 717
TscAI CASTG 2 cut(s) 361, 646
TseFI GTSAC 2 cut(s) 361, 584
TseI GCWGC 2 cut(s) 523, 743
Tsp45I GTSAC 2 cut(s) 361, 584
TspDTI ATGAA 3 cut(s) 54, 273, 643
TspRI CASTG 2 cut(s) 361, 646
Van91I CCANNNNNTGG 1 cut(s) 118
VpaK11BI GGWCC 2 cut(s) 109, 267
XapI RAATTY 2 cut(s) 260, 650
XbaI TCTAGA 1 cut(s) 724
XceI RCATGY 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 219
XspI CTAG 3 cut(s) 144, 725, 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.